EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD03G1241800.v1.1 |
| prunus_persica | Prupe.4G167100_v2.0.a1 Prupe.4G167100_v2.0.a1 |
| pyrus_communis | pycom03g18890 |
| rosa_chinensis | RchiOBHm_Chr5g0030831 RchiOBHm_Chr5g0031211 RchiOBHm_Chr5g0031411 RchiOBHm_Chr7g0194341 |
| rosa_laevigata | RLG00000002889 RLG00000009452 RLG00000010063 RLG00000020938 RLG00000025330 RLG00000029419 RLG00000033292 |
| rosa_multiflora | Rmu_sc0002426.1_g000013 Rmu_sc0002505.1_g000024 Rmu_sc0004790.1_g000012 Rmu_sc0005543.1_g000001 Rmu_sc0014478.1_g000005 Rmu_sc0014478.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00039380 Rroxscaffold_1G00049410 Rroxscaffold_4G00315890 |
| rosa_rugosa | Rorug05G0122800 Rorug05G0125100 |
| rosa_samantha | Rh1BG113100 Rh1CG264100 Rh2BG469500 Rh2DG478900 Rh5AG213800 Rh5AG217800 Rh5BG213000 Rh5BG213100 Rh5BG217500 Rh5CG236700 Rh5CG239700 Rh5CG241300 Rh5DG217500 Rh5DG221000 Rh5DG222900 Rh5DG281900 Rh5DG502600 Rh6BG212100 Rh7AG059300 Rh7CG251400 |
| rosa_wichuraiana | Rw0G012990 Rw0G015960 Rw5G019540 Rw5G019900 Rw5G027790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 71, 225 |
| AcsI | RAATTY | 2 cut(s) | 42, 88 |
| AgsI | TTSAA | 1 cut(s) | 93 |
| AluBI | AGCT | 2 cut(s) | 77, 106 |
| AluI | AGCT | 2 cut(s) | 77, 106 |
| Alw26I | GTCTC | 1 cut(s) | 32 |
| AoxI | GGCC | 1 cut(s) | 306 |
| ApeKI | GCWGC | 2 cut(s) | 161, 200 |
| ApoI | RAATTY | 2 cut(s) | 42, 88 |
| AspS9I | GGNCC | 1 cut(s) | 307 |
| AsuHPI | GGTGA | 1 cut(s) | 49 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 255, 288 |
| BbvI | GCAGC | 2 cut(s) | 148, 187 |
| BceAI | ACGGC | 1 cut(s) | 321 |
| BcoDI | GTCTC | 1 cut(s) | 32 |
| BfaI | CTAG | 1 cut(s) | 322 |
| BfmI | CTRYAG | 1 cut(s) | 201 |
| BisI | GCNGC | 2 cut(s) | 162, 201 |
| BlsI | GCNGC | 2 cut(s) | 163, 202 |
| BmgT120I | GGNCC | 1 cut(s) | 307 |
| BmiI | GGNNCC | 3 cut(s) | 151, 286, 309 |
| BsaJI | CCNNGG | 2 cut(s) | 8, 244 |
| BseDI | CCNNGG | 2 cut(s) | 8, 244 |
| BseMII | CTCAG | 2 cut(s) | 187, 207 |
| BseXI | GCAGC | 2 cut(s) | 148, 187 |
| BseYI | CCCAGC | 1 cut(s) | 280 |
| BshFI | GGCC | 1 cut(s) | 308 |
| BsmAI | GTCTC | 1 cut(s) | 32 |
| BsnI | GGCC | 1 cut(s) | 308 |
| Bsp143I | GATC | 1 cut(s) | 219 |
| BspACI | CCGC | 2 cut(s) | 71, 225 |
| BspANI | GGCC | 1 cut(s) | 308 |
| BspCNI | CTCAG | 2 cut(s) | 186, 208 |
| BspLI | GGNNCC | 3 cut(s) | 151, 286, 309 |
| BspMAI | CTGCAG | 1 cut(s) | 205 |
| BssECI | CCNNGG | 2 cut(s) | 8, 244 |
| BssMI | GATC | 1 cut(s) | 219 |
| BssT1I | CCWWGG | 1 cut(s) | 8 |
| Bst4CI | ACNGT | 1 cut(s) | 245 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 108, 200, 209 |
| BstC8I | GCNNGC | 1 cut(s) | 104 |
| BstDEI | CTNAG | 2 cut(s) | 173, 216 |
| BstDSI | CCRYGG | 1 cut(s) | 244 |
| BstKTI | GATC | 1 cut(s) | 222 |
| BstMAI | GTCTC | 1 cut(s) | 32 |
| BstMBI | GATC | 1 cut(s) | 219 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 108, 200, 209 |
| BstSFI | CTRYAG | 1 cut(s) | 201 |
| BstV1I | GCAGC | 2 cut(s) | 148, 187 |
| BsuRI | GGCC | 1 cut(s) | 308 |
| BtgI | CCRYGG | 1 cut(s) | 244 |
| BtsI | GCAGTG | 1 cut(s) | 29 |
| BtsIMutI | CAGTG | 1 cut(s) | 29 |
| Cac8I | GCNNGC | 1 cut(s) | 104 |
| Cfr13I | GGNCC | 1 cut(s) | 307 |
| CviJI | RGCY | 5 cut(s) | 77, 106, 200, 287, 308 |
| CviKI_1 | RGCY | 5 cut(s) | 77, 106, 200, 287, 308 |
| DdeI | CTNAG | 2 cut(s) | 173, 216 |
| DpnI | GATC | 1 cut(s) | 221 |
| DpnII | GATC | 1 cut(s) | 219 |
| Eco130I | CCWWGG | 1 cut(s) | 8 |
| Eco32I | GATATC | 2 cut(s) | 186, 292 |
| EcoRV | GATATC | 2 cut(s) | 186, 292 |
| EcoT14I | CCWWGG | 1 cut(s) | 8 |
| ErhI | CCWWGG | 1 cut(s) | 8 |
| FaiI | YATR | 4 cut(s) | 237, 252, 276, 278 |
| FauNDI | CATATG | 1 cut(s) | 276 |
| Fnu4HI | GCNGC | 2 cut(s) | 162, 201 |
| Fsp4HI | GCNGC | 2 cut(s) | 162, 201 |
| FspBI | CTAG | 1 cut(s) | 322 |
| GluI | GCNGC | 2 cut(s) | 162, 201 |
| GsaI | CCCAGC | 1 cut(s) | 284 |
| HaeIII | GGCC | 1 cut(s) | 308 |
| HindIII | AAGCTT | 1 cut(s) | 75 |
| HphI | GGTGA | 1 cut(s) | 49 |
| Hpy166II | GTNNAC | 1 cut(s) | 62 |
| Hpy188I | TCNGA | 1 cut(s) | 176 |
| Hpy188III | TCNNGA | 2 cut(s) | 29, 121 |
| Hpy8I | GTNNAC | 1 cut(s) | 62 |
| HpyAV | CCTTC | 1 cut(s) | 200 |
| HpyCH4III | ACNGT | 1 cut(s) | 245 |
| HpyCH4V | TGCA | 3 cut(s) | 102, 164, 203 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 108, 200, 209 |
| HpyF3I | CTNAG | 2 cut(s) | 173, 216 |
| Kzo9I | GATC | 1 cut(s) | 219 |
| LmnI | GCTCC | 2 cut(s) | 81, 284 |
| LpnPI | CCDG | 4 cut(s) | 99, 132, 166, 266 |
| Lsp1109I | GCAGC | 2 cut(s) | 148, 187 |
| MaeI | CTAG | 1 cut(s) | 322 |
| MalI | GATC | 1 cut(s) | 221 |
| MboI | GATC | 1 cut(s) | 219 |
| MboII | GAAGA | 1 cut(s) | 309 |
| MluCI | AATT | 2 cut(s) | 42, 88 |
| MnlI | CCTC | 3 cut(s) | 43, 170, 182 |
| MseI | TTAA | 1 cut(s) | 302 |
| MspA1I | CMGCKG | 1 cut(s) | 225 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 108, 200, 209 |
| NdeI | CATATG | 1 cut(s) | 276 |
| NdeII | GATC | 1 cut(s) | 219 |
| NlaIV | GGNNCC | 3 cut(s) | 151, 286, 309 |
| PkrI | GCNGC | 2 cut(s) | 163, 202 |
| PspFI | CCCAGC | 1 cut(s) | 280 |
| PspN4I | GGNNCC | 3 cut(s) | 151, 286, 309 |
| PspPI | GGNCC | 1 cut(s) | 307 |
| PstI | CTGCAG | 1 cut(s) | 205 |
| SaqAI | TTAA | 1 cut(s) | 302 |
| SatI | GCNGC | 2 cut(s) | 162, 201 |
| Sau3AI | GATC | 1 cut(s) | 219 |
| Sau96I | GGNCC | 1 cut(s) | 307 |
| SetI | ASST | 7 cut(s) | 10, 54, 79, 108, 174, 181, 211 |
| SfcI | CTRYAG | 1 cut(s) | 201 |
| Sse9I | AATT | 2 cut(s) | 42, 88 |
| SsiI | CCGC | 2 cut(s) | 71, 225 |
| SspMI | CTAG | 1 cut(s) | 322 |
| StyI | CCWWGG | 1 cut(s) | 8 |
| TaaI | ACNGT | 1 cut(s) | 245 |
| TaqI | TCGA | 1 cut(s) | 30 |
| TasI | AATT | 2 cut(s) | 42, 88 |
| Tru1I | TTAA | 1 cut(s) | 302 |
| Tru9I | TTAA | 1 cut(s) | 302 |
| TscAI | CASTG | 1 cut(s) | 29 |
| TseI | GCWGC | 2 cut(s) | 161, 200 |
| TspDTI | ATGAA | 1 cut(s) | 263 |
| TspRI | CASTG | 1 cut(s) | 29 |
| XapI | RAATTY | 2 cut(s) | 42, 88 |
| XspI | CTAG | 1 cut(s) | 322 |