pycom16g16160

amine oxidase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
12095539 .. 12102489
6951 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1407 bp
ATGAAAATAGTGGAGTATTATGACAGGTCTAGGCTTCCGATGCCGAAGGCTGAAGGAACGGAGTATCGGCTGTCAAAGCAGAAGCCGCCATTCGGTCCGCCGCTGAATGGTTTCGTTATCAAGCAACCGAACGGACCCGGGTTCAAAATCGTCGGGCACAAAATAAGCTGGGCTAATTGGGATTTCCATTTGGGATTTGATGTTCGAGCTGGTCCAATAATTTCGTTGGCATCAATCTACGATCTAGAAAAGGCTACATATCGTCAAGTATTATACAGAGCGTTCGTATCCGAGCTTTTTGTGCCGTACATGGACCCAACTGAAGAATGGTACTACAAGACCTTCTTTGATGCCGGTGAATATGGTTTTGGTCAACTGGCTATGCCACTTGAGCCCTTGACTGATTGCCCTGCCAATGCTGAGTTCTTGGATGCATACTATGCTGGGGAGGATGGTACTCCTGTTAAAATATCTAATGCTTTTTGCATATTTGAGCAACAGTCTGGAAGTGTCTTGTGGCGTCACACTGAATATGCAATTCATGGAGAACTGATAACGGAGGTTAGGCCAGAACTGAGCTTGATAGTGAGGATGGTCGCAACTGTTGGCAACTACGATTACATACTCGACTGGGAATTTAAGCCAAGCGGCTCCATCAAAATTGGGGTAGGCTTAACAGGAATACTAGAAGTGAAGGCTGCAGATTACACTCACACTAGTCAAATAAAGGAGGATGCTTATGGTACATTGCTAGCAGATTATACAATTGGGGTGTACCACGACCATTTCTTGACCTATTACCTTGATCTTGATGTGGATGGTGAAGCCAACTCCTTTGTCAAAAACAATTTGGTGACCAAAAGAGTGACAGACAAAAACTCACCTAGAAAGAGCTATTGGACAGTTGAAAGTGAGACAGCTAAAACCGAATCGGATGCAAAAATTCAGTTGGGTTTGAAGGCATCGGAGCTGGTTGTGGTAAACCCTAACAAGAAGACCAAACCTGGAAACAGCATCGGTTATCGTCTAATTCCAGGGTCAATATCAAAAGCACTTTTAAACGACGATGATTACCCACAAATCCGAGGTGCATTTACCAATTACAATGTATGGGTCACACCTTATAACAAGTCTGAAAAATGGGCTGGAGGACTATATGCTGATCGGAGCCATGGAGAAGAAACACTGGCTACTTGGAGCCTCAGGAACCGAGAGATTGAAAATAAGGACATAGTGTTATGGTACACCGTGGGGTTTCATCATGTTCCTTGCCAAGAAGATTTTCCAATTATGCCAACATTAAGCGGTGGATTTGAGCTTCGGCCTACAAATTTCTTTGAGAGCAATCCTGTGCTTAAAACGAAACCTCCAAGTTCTAAGCATGTTAACTCCACAAAACAACCCTAA

Protein Analysis

469

Amino Acids

52.99

Weight (kDa)

5.74

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_amine_oxid PF01179 40 - 452 7.8e-143 Copper amine oxidase, enzyme domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1125
AciI CCGC 5 cut(s) 86, 98, 101, 648, 1305
AcsI RAATTY 3 cut(s) 635, 942, 1330
AcuI CTGAAG 2 cut(s) 72, 342
AcyI GRCGYC 1 cut(s) 520
AfaI GTAC 6 cut(s) 308, 332, 457, 745, 776, 1244
AfiI CCNNNNNNNGG 2 cut(s) 92, 107
AgsI TTSAA 4 cut(s) 145, 908, 958, 1220
AhlI ACTAGT 1 cut(s) 716
AjnI CCWGG 2 cut(s) 1003, 1033
AjuI GAANNNNNNNTTGG 8 cut(s) 351, 383, 407, 439, 880, 912, 1266, 1298
AloI GAACNNNNNNTCC 2 cut(s) 186, 218
AluBI AGCT 8 cut(s) 168, 209, 295, 579, 894, 920, 970, 1318
AluI AGCT 8 cut(s) 168, 209, 295, 579, 894, 920, 970, 1318
Alw26I GTCTC 1 cut(s) 908
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 2 cut(s) 566, 1322
ApeKI GCWGC 1 cut(s) 698
ApoI RAATTY 3 cut(s) 635, 942, 1330
Asp700I GAANNNNTTC 2 cut(s) 110, 1281
AspS9I GGNCC 4 cut(s) 95, 134, 212, 313
AsuC2I CCSGG 2 cut(s) 138, 139
AsuHPI GGTGA 4 cut(s) 368, 833, 865, 873
AsuNHI GCTAGC 1 cut(s) 751
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 4 cut(s) 95, 134, 212, 313
AxyI CCTNAGG 1 cut(s) 1202
BaeGI GKGCMC 1 cut(s) 159
BaeI ACNNNNGTAYC 2 cut(s) 447, 480
BanII GRGCYC 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 1001
BbvI GCAGC 1 cut(s) 685
BccI CCATC 4 cut(s) 446, 586, 662, 812
BceAI ACGGC 1 cut(s) 289
BcgI CGANNNNNNTGC 2 cut(s) 917, 951
BciT130I CCWGG 2 cut(s) 1005, 1035
BciVI GTATCC 1 cut(s) 298
BcnI CCSGG 2 cut(s) 138, 139
BcoDI GTCTC 1 cut(s) 908
BcuI ACTAGT 1 cut(s) 716
BfaI CTAG 6 cut(s) 30, 245, 686, 717, 752, 885
BfmI CTRYAG 1 cut(s) 699
BfuI GTATCC 1 cut(s) 298
BisI GCNGC 4 cut(s) 86, 101, 649, 699
BlsI GCNGC 4 cut(s) 87, 102, 650, 700
Bme1390I CCNGG 4 cut(s) 138, 139, 1005, 1035
Bme18I GGWCC 4 cut(s) 95, 134, 212, 313
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 4 cut(s) 95, 134, 212, 313
BmiI GGNNCC 6 cut(s) 136, 315, 652, 1169, 1199, 1208
BmrFI CCNGG 4 cut(s) 138, 139, 1005, 1035
BmrI ACTGGG 1 cut(s) 640
BmsI GCATC 8 cut(s) 30, 239, 340, 421, 724, 925, 971, 1023
BmtI GCTAGC 1 cut(s) 755
BmuI ACTGGG 1 cut(s) 640
BpiI GAAGAC 1 cut(s) 1001
BpmI CTGGAG 1 cut(s) 1167
BpuEI CTTGAG 1 cut(s) 410
BpuMI CCSGG 2 cut(s) 138, 139
BsaHI GRCGYC 1 cut(s) 520
BsaJI CCNNGG 5 cut(s) 137, 1034, 1084, 1171, 1248
BsaXI ACNNNNNCTCC 2 cut(s) 1351, 1381
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 107
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 3 cut(s) 381, 635, 1191
Bse21I CCTNAGG 1 cut(s) 1202
Bse3DI GCAATG 1 cut(s) 746
BseBI CCWGG 2 cut(s) 1005, 1035
BseDI CCNNGG 5 cut(s) 137, 1034, 1084, 1171, 1248
BseGI GGATG 6 cut(s) 436, 457, 597, 739, 823, 940
BseLI CCNNNNNNNGG 2 cut(s) 92, 107
BseMI GCAATG 1 cut(s) 746
BseMII CTCAG 3 cut(s) 411, 566, 1216
BseNI ACTGG 3 cut(s) 381, 635, 1191
BseSI GKGCMC 1 cut(s) 159
BseXI GCAGC 1 cut(s) 685
BseYI CCCAGC 2 cut(s) 168, 443
BshFI GGCC 2 cut(s) 568, 1324
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 2 cut(s) 138, 354
BslI CCNNNNNNNGG 2 cut(s) 92, 107
BsmAI GTCTC 1 cut(s) 908
BsnI GGCC 2 cut(s) 568, 1324
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 159, 396
Bsp143I GATC 3 cut(s) 241, 805, 1162
Bsp19I CCATGG 1 cut(s) 1171
BspACI CCGC 5 cut(s) 86, 98, 101, 648, 1305
BspANI GGCC 2 cut(s) 568, 1324
BspCNI CTCAG 3 cut(s) 412, 567, 1215
BspLI GGNNCC 6 cut(s) 136, 315, 652, 1169, 1199, 1208
BspMAI CTGCAG 1 cut(s) 703
BspOI GCTAGC 1 cut(s) 755
BsrDI GCAATG 1 cut(s) 746
BsrFI RCCGGY 1 cut(s) 353
BsrI ACTGG 3 cut(s) 381, 635, 1191
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 5 cut(s) 137, 1034, 1084, 1171, 1248
BssMI GATC 3 cut(s) 241, 805, 1162
BssNI GRCGYC 1 cut(s) 520
BssT1I CCWWGG 1 cut(s) 1171
Bst2UI CCWGG 2 cut(s) 1005, 1035
Bst4CI ACNGT 4 cut(s) 501, 604, 904, 1249
BstACI GRCGYC 1 cut(s) 520
BstAPI GCANNNNNTGC 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 753
BstDEI CTNAG 4 cut(s) 420, 575, 1202, 1377
BstDSI CCRYGG 2 cut(s) 1171, 1248
BstEII GGTNACC 1 cut(s) 853
BstF5I GGATG 6 cut(s) 436, 457, 597, 739, 823, 940
BstKTI GATC 3 cut(s) 244, 808, 1165
BstMAI GTCTC 1 cut(s) 908
BstMBI GATC 3 cut(s) 241, 805, 1162
BstMWI GCNNNNNNNGC 6 cut(s) 40, 76, 85, 301, 391, 440
BstNI CCWGG 2 cut(s) 1005, 1035
BstNSI RCATGY 1 cut(s) 1385
BstPI GGTNACC 1 cut(s) 853
BstSCI CCNGG 4 cut(s) 136, 137, 1003, 1033
BstSFI CTRYAG 1 cut(s) 699
BstSLI GKGCMC 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 685
BstV2I GAAGAC 1 cut(s) 1001
Bsu36I CCTNAGG 1 cut(s) 1202
BsuI GTATCC 1 cut(s) 298
BsuRI GGCC 2 cut(s) 568, 1324
BtgI CCRYGG 2 cut(s) 1171, 1248
BtsCI GGATG 6 cut(s) 436, 457, 597, 739, 823, 940
BtsIMutI CAGTG 2 cut(s) 525, 1184
Cac8I GCNNGC 1 cut(s) 753
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 4 cut(s) 95, 134, 212, 313
Cfr9I CCCGGG 1 cut(s) 137
CpoI CGGWCCG 1 cut(s) 95
CseI GACGC 1 cut(s) 509
Csp6I GTAC 6 cut(s) 307, 331, 456, 744, 775, 1243
CspI CGGWCCG 1 cut(s) 95
CviAII CATG 5 cut(s) 310, 542, 1172, 1262, 1382
CviQI GTAC 6 cut(s) 307, 331, 456, 744, 775, 1243
DdeI CTNAG 4 cut(s) 420, 575, 1202, 1377
DpnI GATC 3 cut(s) 243, 807, 1164
DpnII GATC 3 cut(s) 241, 805, 1162
DraI TTTAAA 1 cut(s) 1059
EciI GGCGGA 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 1171
Eco24I GRGCYC 1 cut(s) 396
Eco47I GGWCC 4 cut(s) 95, 134, 212, 313
Eco57I CTGAAG 2 cut(s) 72, 342
Eco81I CCTNAGG 1 cut(s) 1202
Eco88I CYCGRG 1 cut(s) 137
Eco91I GGTNACC 1 cut(s) 853
EcoO65I GGTNACC 1 cut(s) 853
EcoRII CCWGG 2 cut(s) 1003, 1033
EcoT14I CCWWGG 1 cut(s) 1171
EcoT22I ATGCAT 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 1171
FaeI CATG 5 cut(s) 313, 545, 1175, 1265, 1385
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FatI CATG 5 cut(s) 309, 541, 1171, 1261, 1381
Fnu4HI GCNGC 4 cut(s) 86, 101, 649, 699
FokI GGATG 6 cut(s) 443, 464, 604, 746, 830, 947
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 4 cut(s) 86, 101, 649, 699
FspBI CTAG 6 cut(s) 30, 245, 686, 717, 752, 885
GluI GCNGC 4 cut(s) 86, 101, 649, 699
GsaI CCCAGC 2 cut(s) 172, 447
GsuI CTGGAG 1 cut(s) 1167
HaeIII GGCC 2 cut(s) 568, 1324
HapII CCGG 2 cut(s) 138, 354
HgaI GACGC 1 cut(s) 509
Hin1I GRCGYC 1 cut(s) 520
Hin1II CATG 5 cut(s) 313, 545, 1175, 1265, 1385
HincII GTYRAC 2 cut(s) 374, 1387
HindII GTYRAC 2 cut(s) 374, 1387
HinfI GANTC 1 cut(s) 929
HpaI GTTAAC 1 cut(s) 1387
HpaII CCGG 2 cut(s) 138, 354
HphI GGTGA 4 cut(s) 368, 833, 865, 873
Hpy166II GTNNAC 5 cut(s) 374, 775, 982, 1245, 1387
Hpy188I TCNGA 7 cut(s) 39, 292, 934, 967, 1085, 1135, 1167
Hpy188III TCNNGA 5 cut(s) 245, 504, 790, 809, 1204
Hpy8I GTNNAC 5 cut(s) 374, 775, 982, 1245, 1387
Hpy99I CGWCG 2 cut(s) 155, 1067
HpyAV CCTTC 5 cut(s) 40, 47, 352, 688, 952
HpyCH4III ACNGT 4 cut(s) 501, 604, 904, 1249
HpyCH4V TGCA 6 cut(s) 434, 486, 536, 701, 938, 1091
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 76, 85, 301, 391, 440
HpyF3I CTNAG 4 cut(s) 420, 575, 1202, 1377
Hsp92I GRCGYC 1 cut(s) 520
Hsp92II CATG 5 cut(s) 313, 545, 1175, 1265, 1385
KspAI GTTAAC 1 cut(s) 1387
Kzo9I GATC 3 cut(s) 241, 805, 1162
LmnI GCTCC 4 cut(s) 656, 967, 1167, 1197
Lsp1109I GCAGC 1 cut(s) 685
LweI GCATC 8 cut(s) 30, 239, 340, 421, 724, 925, 971, 1023
MaeI CTAG 6 cut(s) 30, 245, 686, 717, 752, 885
MaeIII GTNAC 4 cut(s) 521, 853, 865, 1114
MalI GATC 3 cut(s) 243, 807, 1164
MboI GATC 3 cut(s) 241, 805, 1162
MboII GAAGA 4 cut(s) 335, 1006, 1190, 1289
MfeI CAATTG 1 cut(s) 765
MhlI GDGCHC 2 cut(s) 159, 396
MnlI CCTC 8 cut(s) 442, 553, 582, 724, 1079, 1142, 1211, 1377
Mph1103I ATGCAT 1 cut(s) 436
MroXI GAANNNNTTC 2 cut(s) 110, 1281
MseI TTAA 7 cut(s) 465, 639, 674, 1058, 1301, 1356, 1386
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 2 cut(s) 138, 354
MspR9I CCNGG 4 cut(s) 138, 139, 1005, 1035
MunI CAATTG 1 cut(s) 765
MvaI CCWGG 2 cut(s) 1005, 1035
MwoI GCNNNNNNNGC 6 cut(s) 40, 76, 85, 301, 391, 440
NciI CCSGG 2 cut(s) 138, 139
NcoI CCATGG 1 cut(s) 1171
NdeII GATC 3 cut(s) 241, 805, 1162
NheI GCTAGC 1 cut(s) 751
NlaIII CATG 5 cut(s) 313, 545, 1175, 1265, 1385
NlaIV GGNNCC 6 cut(s) 136, 315, 652, 1169, 1199, 1208
NmuCI GTSAC 4 cut(s) 521, 853, 865, 1114
NsiI ATGCAT 1 cut(s) 436
NspI RCATGY 1 cut(s) 1385
PdmI GAANNNNTTC 2 cut(s) 110, 1281
PfeI GAWTC 1 cut(s) 929
PkrI GCNGC 4 cut(s) 87, 102, 650, 700
PsiI TTATAA 1 cut(s) 1125
Psp6I CCWGG 2 cut(s) 1003, 1033
PspEI GGTNACC 1 cut(s) 853
PspFI CCCAGC 2 cut(s) 168, 443
PspGI CCWGG 2 cut(s) 1003, 1033
PspN4I GGNNCC 6 cut(s) 136, 315, 652, 1169, 1199, 1208
PspPI GGNCC 4 cut(s) 95, 134, 212, 313
PstI CTGCAG 1 cut(s) 703
RsaI GTAC 6 cut(s) 308, 332, 457, 745, 776, 1244
RsaNI GTAC 6 cut(s) 307, 331, 456, 744, 775, 1243
Rsr2I CGGWCCG 1 cut(s) 95
RsrII CGGWCCG 1 cut(s) 95
SaqAI TTAA 7 cut(s) 465, 639, 674, 1058, 1301, 1356, 1386
SatI GCNGC 4 cut(s) 86, 101, 649, 699
Sau3AI GATC 3 cut(s) 241, 805, 1162
Sau96I GGNCC 4 cut(s) 95, 134, 212, 313
ScrFI CCNGG 4 cut(s) 138, 139, 1005, 1035
SduI GDGCHC 2 cut(s) 159, 396
SfaNI GCATC 8 cut(s) 30, 239, 340, 421, 724, 925, 971, 1023
SfcI CTRYAG 1 cut(s) 699
SinI GGWCC 4 cut(s) 95, 134, 212, 313
SmaI CCCGGG 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
SpeI ACTAGT 1 cut(s) 716
SsiI CCGC 5 cut(s) 86, 98, 101, 648, 1305
SspMI CTAG 6 cut(s) 30, 245, 686, 717, 752, 885
StyD4I CCNGG 4 cut(s) 136, 137, 1003, 1033
StyI CCWWGG 1 cut(s) 1171
TaaI ACNGT 4 cut(s) 501, 604, 904, 1249
TaqI TCGA 2 cut(s) 205, 627
TaqII GACCGA 1 cut(s) 83
TauI GCSGC 3 cut(s) 88, 103, 651
TfiI GAWTC 1 cut(s) 929
Tru1I TTAA 7 cut(s) 465, 639, 674, 1058, 1301, 1356, 1386
Tru9I TTAA 7 cut(s) 465, 639, 674, 1058, 1301, 1356, 1386
TscAI CASTG 2 cut(s) 532, 1191
TseFI GTSAC 4 cut(s) 521, 853, 865, 1114
TseI GCWGC 1 cut(s) 698
Tsp45I GTSAC 4 cut(s) 521, 853, 865, 1114
TspDTI ATGAA 3 cut(s) 17, 530, 1247
TspGWI ACGGA 3 cut(s) 74, 147, 572
TspMI CCCGGG 1 cut(s) 137
TspRI CASTG 2 cut(s) 532, 1191
VpaK11BI GGWCC 4 cut(s) 95, 134, 212, 313
XapI RAATTY 3 cut(s) 635, 942, 1330
XbaI TCTAGA 1 cut(s) 244
XceI RCATGY 1 cut(s) 1385
XcmI CCANNNNNNNNNTGG 1 cut(s) 324
XmaI CCCGGG 1 cut(s) 137
XmnI GAANNNNTTC 2 cut(s) 110, 1281
XspI CTAG 6 cut(s) 30, 245, 686, 717, 752, 885
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.