Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Forward (+)

12111369 .. 12112214

Gene Structure 846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCGGCTTCAACTATGAAACTAACGCTCTTCTTACTCCCTTTGTTCTTCACCTTCTCCCTAATAATCTCAAGCCACCACCCACTAGATCCCTTAACCCCATCTGAATTCAAAAAGGTCCGAACCATAGTGAAAAAATCATACCCATCTGGCCTCAAACACAACCTAACCTTTCAATACATAGGTTTAGACGAGCCAGACAAACCAGTCCTCCAATCATGGCTTTCATCAAAAACCAAATCAAATCCCCCTCCTCGACGAGCCTTTGTCATCGCACGCCTCCACAAAGAAACCCACGAGCTCGTGGTCGATTTATCCAATCGTTACATAATTTCCGATAAAGTTTACGGTGGAAATGATGGTTACCCTATGCTCACCAACGACGAACAAACAGCGGCAAGTGCACTTCCGTTTTCCTATCAACCATTTCTCGGTTCGGTTAAGAAGAGGGAGCTTAACTTGTCCGACGTTGTTTGTTCCACGTATACAGTTGGGTGGTTTGGGGAGAAGCATAGTAGAAGAGCTATCAAAATTCTGTGTTTTTATAAAGAAGGCACGGCTAATCTGTACATGAGGCCCTTGGAGGGAGTATCTTTGTTGGTTGATCTTGATGAAATGAAAATAGTGGAGTATTATGACAGGTCTAGGCTTCCGATGCCGAAGGCTGAAGGAACGGAGTATCGGCTGTCAAAGCAGAAGCCGCCATTCGGTCCGCCGCTGAATGGTTTCGTTATCGAGCAACCGAACGGACCCGGGTTCAAAATCGACGGGCACAAAATAAGGTTAGCTTTACGTGAATTTACTTTAAGAGAAATGTGTGATCACAAGAAATTTCGCAGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

282

Amino Acids

32.13

Weight (kDa)

9.5

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN2	PF02727	27 - 114	3.5e-19	Copper amine oxidase, N2 domain
Cu_amine_oxidN3	PF02728	123 - 217	3.8e-22	Copper amine oxidase, N3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
AasI	GACNNNNNNGTC	1 cut(s)	206
AccI	GTMKAC	1 cut(s)	485
AciI	CCGC	5 cut(s)	5, 395, 701, 713, 716
AclWI	GGATC	1 cut(s)	83
AcsI	RAATTY	4 cut(s)	107, 531, 797, 830
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	4 cut(s)	431, 584, 707, 722
AgsI	TTSAA	4 cut(s)	12, 112, 176, 760
AluBI	AGCT	4 cut(s)	301, 454, 524, 788
AluI	AGCT	4 cut(s)	301, 454, 524, 788
Alw21I	GWGCWC	2 cut(s)	303, 406
Alw44I	GTGCAC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	83
Ama87I	CYCGRG	1 cut(s)	752
AoxI	GGCC	2 cut(s)	151, 575
ApaLI	GTGCAC	1 cut(s)	402
ApoI	RAATTY	4 cut(s)	107, 531, 797, 830
Asp700I	GAANNNNTTC	1 cut(s)	725
AspS9I	GGNCC	4 cut(s)	118, 576, 710, 749
AsuC2I	CCSGG	2 cut(s)	753, 754
AsuHPI	GGTGA	2 cut(s)	43, 367
AvaI	CYCGRG	1 cut(s)	752
AvaII	GGWCC	3 cut(s)	118, 710, 749
BaeGI	GKGCMC	2 cut(s)	406, 774
BanII	GRGCYC	1 cut(s)	303
BauI	CACGAG	2 cut(s)	296, 302
Bbv12I	GWGCWC	2 cut(s)	303, 406
BccI	CCATC	3 cut(s)	109, 154, 353
BceAI	ACGGC	1 cut(s)	573
BclI	TGATCA	1 cut(s)	820
BcnI	CCSGG	2 cut(s)	753, 754
BfaI	CTAG	2 cut(s)	86, 645
BisI	GCNGC	4 cut(s)	6, 396, 701, 716
BlsI	GCNGC	4 cut(s)	7, 397, 702, 717
Bme1390I	CCNGG	2 cut(s)	753, 754
Bme18I	GGWCC	3 cut(s)	118, 710, 749
BmeT110I	CYCGRG	1 cut(s)	752
BmgT120I	GGNCC	4 cut(s)	118, 576, 710, 749
BmiI	GGNNCC	1 cut(s)	751
BmrFI	CCNGG	2 cut(s)	753, 754
BmsI	GCATC	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	55
BpuMI	CCSGG	2 cut(s)	753, 754
BsaAI	YACGTR	2 cut(s)	483, 794
BsaJI	CCNNGG	2 cut(s)	579, 752
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bsc4I	CCNNNNNNNGG	4 cut(s)	431, 584, 707, 722
Bse1I	ACTGG	1 cut(s)	206
BseDI	CCNNGG	2 cut(s)	579, 752
BseLI	CCNNNNNNNGG	4 cut(s)	431, 584, 707, 722
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	243
BseSI	GKGCMC	2 cut(s)	406, 774
BshFI	GGCC	2 cut(s)	153, 577
BsiHKAI	GWGCWC	2 cut(s)	303, 406
BsiHKCI	CYCGRG	1 cut(s)	752
BsiSI	CCGG	1 cut(s)	753
BslI	CCNNNNNNNGG	4 cut(s)	431, 584, 707, 722
BsnI	GGCC	2 cut(s)	153, 577
BsoBI	CYCGRG	1 cut(s)	752
Bsp1286I	GDGCHC	3 cut(s)	303, 406, 774
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	3 cut(s)	88, 604, 820
BspACI	CCGC	5 cut(s)	5, 395, 701, 713, 716
BspANI	GGCC	2 cut(s)	153, 577
BspLI	GGNNCC	1 cut(s)	751
BspPI	GGATC	1 cut(s)	83
BspQI	GCTCTTC	2 cut(s)	35, 514
BsrGI	TGTACA	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	579, 752
BssMI	GATC	3 cut(s)	88, 604, 820
BssNAI	GTATAC	1 cut(s)	486
BssSI	CACGAG	2 cut(s)	296, 302
BssT1I	CCWWGG	1 cut(s)	579
Bst1107I	GTATAC	1 cut(s)	486
Bst2BI	CACGAG	2 cut(s)	296, 302
Bst4CI	ACNGT	2 cut(s)	350, 490
Bst6I	CTCTTC	3 cut(s)	35, 440, 514
BstAUI	TGTACA	1 cut(s)	567
BstBAI	YACGTR	2 cut(s)	483, 794
BstC8I	GCNNGC	1 cut(s)	277
BstEII	GGTNACC	1 cut(s)	362
BstKTI	GATC	3 cut(s)	91, 607, 823
BstMBI	GATC	3 cut(s)	88, 604, 820
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 655, 691, 700
BstPI	GGTNACC	1 cut(s)	362
BstSCI	CCNGG	2 cut(s)	751, 752
BstSLI	GKGCMC	2 cut(s)	406, 774
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BstZ17I	GTATAC	1 cut(s)	486
BsuRI	GGCC	2 cut(s)	153, 577
BtgZI	GCGATG	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	277
Cfr13I	GGNCC	4 cut(s)	118, 576, 710, 749
Cfr9I	CCCGGG	1 cut(s)	752
CpoI	CGGWCCG	1 cut(s)	710
Csp6I	GTAC	1 cut(s)	568
CspI	CGGWCCG	1 cut(s)	710
CviAII	CATG	2 cut(s)	219, 571
CviQI	GTAC	1 cut(s)	568
DpnI	GATC	3 cut(s)	90, 606, 822
DpnII	GATC	3 cut(s)	88, 604, 820
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
Eam1104I	CTCTTC	3 cut(s)	35, 440, 514
EarI	CTCTTC	3 cut(s)	35, 440, 514
EciI	GGCGGA	1 cut(s)	702
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	579
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	3 cut(s)	118, 710, 749
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	687
Eco88I	CYCGRG	1 cut(s)	752
Eco91I	GGTNACC	1 cut(s)	362
EcoICRI	GAGCTC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	576
EcoO65I	GGTNACC	1 cut(s)	362
EcoRI	GAATTC	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	579
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	2 cut(s)	222, 574
FalI	AAGNNNNNCTT	2 cut(s)	772, 804
FatI	CATG	2 cut(s)	218, 570
FbaI	TGATCA	1 cut(s)	820
FblI	GTMKAC	1 cut(s)	485
Fnu4HI	GCNGC	4 cut(s)	6, 396, 701, 716
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	4 cut(s)	6, 396, 701, 716
FspBI	CTAG	2 cut(s)	86, 645
GluI	GCNGC	4 cut(s)	6, 396, 701, 716
HaeIII	GGCC	2 cut(s)	153, 577
HapII	CCGG	1 cut(s)	753
Hin1II	CATG	2 cut(s)	222, 574
HpaII	CCGG	1 cut(s)	753
HphI	GGTGA	2 cut(s)	43, 367
Hpy166II	GTNNAC	3 cut(s)	346, 404, 486
Hpy188I	TCNGA	5 cut(s)	106, 122, 337, 466, 654
Hpy188III	TCNNGA	1 cut(s)	608
Hpy8I	GTNNAC	3 cut(s)	346, 404, 486
Hpy99I	CGWCG	4 cut(s)	261, 386, 470, 770
HpyAV	CCTTC	4 cut(s)	64, 545, 655, 662
HpyCH4III	ACNGT	2 cut(s)	350, 490
HpyCH4IV	ACGT	3 cut(s)	468, 482, 793
HpyCH4V	TGCA	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 655, 691, 700
HpySE526I	ACGT	3 cut(s)	468, 482, 793
Hsp92II	CATG	2 cut(s)	222, 574
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	3 cut(s)	88, 604, 820
LguI	GCTCTTC	2 cut(s)	35, 514
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	5 cut(s)	135, 210, 219, 625, 766
LweI	GCATC	1 cut(s)	645
MaeI	CTAG	2 cut(s)	86, 645
MaeII	ACGT	3 cut(s)	468, 482, 793
MaeIII	GTNAC	2 cut(s)	323, 362
MalI	GATC	3 cut(s)	90, 606, 822
MboI	GATC	3 cut(s)	88, 604, 820
MboII	GAAGA	4 cut(s)	22, 40, 457, 531
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	3 cut(s)	303, 406, 774
MluCI	AATT	5 cut(s)	107, 330, 531, 797, 830
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	9 cut(s)	164, 221, 261, 264, 290, 441, 567, 577, 833
MroXI	GAANNNNTTC	1 cut(s)	725
MseI	TTAA	4 cut(s)	95, 441, 456, 806
MspA1I	CMGCKG	2 cut(s)	395, 718
MspI	CCGG	1 cut(s)	753
MspR9I	CCNGG	2 cut(s)	753, 754
MwoI	GCNNNNNNNGC	4 cut(s)	401, 655, 691, 700
NciI	CCSGG	2 cut(s)	753, 754
NdeII	GATC	3 cut(s)	88, 604, 820
NlaIII	CATG	2 cut(s)	222, 574
NlaIV	GGNNCC	1 cut(s)	751
PciSI	GCTCTTC	2 cut(s)	35, 514
PdmI	GAANNNNTTC	1 cut(s)	725
PkrI	GCNGC	4 cut(s)	7, 397, 702, 717
Ppu21I	YACGTR	2 cut(s)	483, 794
PsiI	TTATAA	1 cut(s)	546
Psp124BI	GAGCTC	1 cut(s)	303
PspEI	GGTNACC	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	751
PspPI	GGNCC	4 cut(s)	118, 576, 710, 749
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
Rsr2I	CGGWCCG	1 cut(s)	710
RsrII	CGGWCCG	1 cut(s)	710
SacI	GAGCTC	1 cut(s)	303
SapI	GCTCTTC	2 cut(s)	35, 514
SaqAI	TTAA	4 cut(s)	95, 441, 456, 806
SatI	GCNGC	4 cut(s)	6, 396, 701, 716
Sau3AI	GATC	3 cut(s)	88, 604, 820
Sau96I	GGNCC	4 cut(s)	118, 576, 710, 749
ScrFI	CCNGG	2 cut(s)	753, 754
SduI	GDGCHC	3 cut(s)	303, 406, 774
SfaNI	GCATC	1 cut(s)	645
SinI	GGWCC	3 cut(s)	118, 710, 749
SmaI	CCCGGG	1 cut(s)	754
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	5 cut(s)	107, 330, 531, 797, 830
SsiI	CCGC	5 cut(s)	5, 395, 701, 713, 716
SspMI	CTAG	2 cut(s)	86, 645
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	751, 752
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	2 cut(s)	350, 490
TaiI	ACGT	3 cut(s)	471, 485, 796
TaqI	TCGA	4 cut(s)	256, 309, 735, 765
TaqII	GACCGA	1 cut(s)	698
TasI	AATT	5 cut(s)	107, 330, 531, 797, 830
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	4 cut(s)	8, 398, 703, 718
Tru1I	TTAA	4 cut(s)	95, 441, 456, 806
Tru9I	TTAA	4 cut(s)	95, 441, 456, 806
TspDTI	ATGAA	4 cut(s)	32, 216, 627, 632
TspGWI	ACGGA	3 cut(s)	399, 689, 762
TspMI	CCCGGG	1 cut(s)	752
VneI	GTGCAC	1 cut(s)	402
VpaK11BI	GGWCC	3 cut(s)	118, 710, 749
XapI	RAATTY	4 cut(s)	107, 531, 797, 830
XmaI	CCCGGG	1 cut(s)	752
XmiI	GTMKAC	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	725
XspI	CTAG	2 cut(s)	86, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.