Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001139

Physical Location & Seq

Genomic Coordinates Forward (+)

12116486 .. 12118337

Gene Structure 1852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGACCCAACTGAAGAATGGTACTACAAGACCTTCTTCGATGCCGGTGAATTTGGTTTTGGTCAACTGGCTATGCCACTTGAGCCCTTGACTGATTGCCCTGCCAATGCTGAGTTCTTGGATGCATACTATGCTGGGGAGGATGGTACACCTGTTAAAATATCTAATGCTTTTTGCATATTTGAGCAACAGTCTGGAAGTGTCATGTGGCGTCACACTGAATATGCAATTGCTGGAGAACTGGTAGGCTTAACAGGAATACTAGAAGTGAAGGCTGCAGATTACACTCACACTAGTCAAATAAAGGAGGATGCTTATGGTACATTGCTAGCAGATTATACAATTGGGGTGTACCACGACCATTTCTTGACCTATTACCTTGATCTTGATGTGGATGGTGAAGCCAACTCCTTTGTCAAAAACAATTTGGTGACCAAAAGAGTGACAGACAAGAACTCACCTAGAAAGAGCTATTGGACAGTTGAAAGTGAGACAGCTAAAACCGAATCGGATGCAAAAATTCAGTTGGGTTTGAAGGCATCGGAGCTGGTTGTGGTAAACCCTAACAAGAAGACCAAACCTGGAAACAGCATCGGTTATCGTCTAATTCCAGGGTCAATATCAAAAGCACTTTTAAACGACGATGATTACCCACAAATCCGAGGTGCATTTACCAATTACAATGTATGGGTCACACCTTATAACAAGTCTGAAAAATGGGCTGGAGGACTATATGCTGATCGGAGCCATGGAGAAGAAACACTGGCTACTTGGAGCCTGAGGAACCGAGAGATTGAAAATAAGGACATAGTGTTATGGTACACCGTGGGGTTTCATCATGTTCCTTGCCAAGAAGATTTTCCAATTATGCCAACATTAAGCGGTGGATTTGAGCTTCGGCCTACAAATTTCTTTGAGAGCAATCCTGTGCTTAAAACGAAACCTCCAAGTTCTAAGCATGTTAACTCCACAAAACAACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009987 GO:0010035 GO:0016491 GO:0016638 GO:0016641 GO:0042221 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0070887 GO:0071241 GO:0097184 GO:0097185 GO:1901698 GO:1901699

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

328

Amino Acids

36.79

Weight (kDa)

5.11

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxid	PF01179	1 - 76	2.4e-23	Copper amine oxidase, enzyme domain
Cu_amine_oxid	PF01179	82 - 311	2.4e-70	Copper amine oxidase, enzyme domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001139)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31690 AT1G31710
fragaria_vesca	FvH4_2g30510 FvH4_4g15340 FvH4_4g15360 FvH4_4g15380
malus_domestica	MD16G1191900.v1.1 MD16G1192100.v1.1 MD16G1192300.v1.1
prunus_persica	Prupe.1G011900_v2.0.a1 Prupe.1G012000_v2.0.a1
pyrus_communis	pycom16g16160 pycom16g16180 pycom16g16190 pycom16g16200
rosa_chinensis	RchiOBHm_Chr2g0122101 RchiOBHm_Chr4g0416421 RchiOBHm_Chr4g0416431 RchiOBHm_Chr4g0416451 RchiOBHm_Chr4g0416461 RchiOBHm_Chr4g0416501
rosa_laevigata	RLG00000007978 RLG00000007979 RLG00000007982 RLG00000007983
rosa_multiflora	Rmu_co8318835.1_g000001 Rmu_sc0003722.1_g000010 Rmu_sc0003722.1_g000023
rosa_roxburghii	Rroxscaffold_2G00090210 Rroxscaffold_5G00360250 Rroxscaffold_5G00360280 Rroxscaffold_5G00360360 Rroxscaffold_5G00360370
rosa_rugosa	Rorug04G0141800 Rorug04G0141900 Rorug04G0142200
rosa_samantha	Rh4AG204100 Rh4AG204200 Rh4AG204300 Rh4AG204600 Rh4BG201800 Rh4BG202200 Rh4BG202400 Rh4CG215300 Rh4CG215500 Rh4CG215800 Rh4DG201600 Rh4DG201700 Rh4DG201800 Rh5BG514400 Rh5CG538000 Rh5DG526800 Rh7AG414700 Rh7AG415300
rosa_wichuraiana	Rw4G017280 Rw4G017290 Rw4G017310 Rw5G045710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	702
AciI	CCGC	1 cut(s)	882
AcsI	RAATTY	3 cut(s)	50, 519, 907
AcuI	CTGAAG	1 cut(s)	33
AcyI	GRCGYC	1 cut(s)	211
AfaI	GTAC	5 cut(s)	23, 148, 322, 353, 821
AgsI	TTSAA	3 cut(s)	485, 535, 797
AhlI	ACTAGT	1 cut(s)	293
AjnI	CCWGG	2 cut(s)	580, 610
AjuI	GAANNNNNNNTTGG	8 cut(s)	42, 74, 98, 130, 457, 489, 843, 875
AluBI	AGCT	4 cut(s)	471, 497, 547, 895
AluI	AGCT	4 cut(s)	471, 497, 547, 895
Alw26I	GTCTC	1 cut(s)	485
AoxI	GGCC	1 cut(s)	899
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	3 cut(s)	50, 519, 907
Asp700I	GAANNNNTTC	1 cut(s)	858
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	4 cut(s)	59, 410, 442, 450
AsuNHI	GCTAGC	1 cut(s)	328
AvaII	GGWCC	1 cut(s)	4
AxyI	CCTNAGG	1 cut(s)	779
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	578
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	2 cut(s)	137, 389
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BciT130I	CCWGG	2 cut(s)	582, 612
BcoDI	GTCTC	1 cut(s)	485
BcuI	ACTAGT	1 cut(s)	293
BfaI	CTAG	4 cut(s)	263, 294, 329, 462
BfmI	CTRYAG	1 cut(s)	276
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	582, 612
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	4 cut(s)	6, 746, 776, 785
BmrFI	CCNGG	2 cut(s)	582, 612
BmsI	GCATC	6 cut(s)	31, 112, 301, 502, 548, 600
BmtI	GCTAGC	1 cut(s)	332
BpiI	GAAGAC	1 cut(s)	578
BpmI	CTGGAG	2 cut(s)	255, 744
BpuEI	CTTGAG	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	211
BsaJI	CCNNGG	4 cut(s)	611, 661, 748, 825
BsaXI	ACNNNNNCTCC	4 cut(s)	228, 258, 928, 958
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	3 cut(s)	72, 246, 768
Bse21I	CCTNAGG	1 cut(s)	779
Bse3DI	GCAATG	1 cut(s)	323
BseBI	CCWGG	2 cut(s)	582, 612
BseDI	CCNNGG	4 cut(s)	611, 661, 748, 825
BseGI	GGATG	5 cut(s)	127, 148, 316, 400, 517
BseMI	GCAATG	1 cut(s)	323
BseMII	CTCAG	2 cut(s)	102, 770
BseNI	ACTGG	3 cut(s)	72, 246, 768
BseXI	GCAGC	1 cut(s)	262
BseYI	CCCAGC	1 cut(s)	134
BshFI	GGCC	1 cut(s)	901
BsiSI	CCGG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	485
BsnI	GGCC	1 cut(s)	901
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	382, 739
Bsp19I	CCATGG	1 cut(s)	748
BspACI	CCGC	1 cut(s)	882
BspANI	GGCC	1 cut(s)	901
BspCNI	CTCAG	2 cut(s)	103, 771
BspLI	GGNNCC	4 cut(s)	6, 746, 776, 785
BspMAI	CTGCAG	1 cut(s)	280
BspOI	GCTAGC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	3 cut(s)	72, 246, 768
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	4 cut(s)	611, 661, 748, 825
BssMI	GATC	2 cut(s)	382, 739
BssNI	GRCGYC	1 cut(s)	211
BssT1I	CCWWGG	1 cut(s)	748
Bst2UI	CCWGG	2 cut(s)	582, 612
Bst4CI	ACNGT	3 cut(s)	192, 481, 826
BstACI	GRCGYC	1 cut(s)	211
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	3 cut(s)	111, 779, 954
BstDSI	CCRYGG	2 cut(s)	748, 825
BstEII	GGTNACC	1 cut(s)	430
BstF5I	GGATG	5 cut(s)	127, 148, 316, 400, 517
BstKTI	GATC	2 cut(s)	385, 742
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	2 cut(s)	382, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 131
BstNI	CCWGG	2 cut(s)	582, 612
BstNSI	RCATGY	1 cut(s)	962
BstPI	GGTNACC	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	580, 610
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	262
BstV2I	GAAGAC	1 cut(s)	578
Bsu36I	CCTNAGG	1 cut(s)	779
BsuRI	GGCC	1 cut(s)	901
BtgI	CCRYGG	2 cut(s)	748, 825
BtsCI	GGATG	5 cut(s)	127, 148, 316, 400, 517
BtsIMutI	CAGTG	2 cut(s)	216, 761
Cac8I	GCNNGC	1 cut(s)	330
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	5 cut(s)	22, 147, 321, 352, 820
CviAII	CATG	4 cut(s)	205, 749, 839, 959
CviQI	GTAC	5 cut(s)	22, 147, 321, 352, 820
DdeI	CTNAG	3 cut(s)	111, 779, 954
DpnI	GATC	2 cut(s)	384, 741
DpnII	GATC	2 cut(s)	382, 739
DraI	TTTAAA	1 cut(s)	636
Eco130I	CCWWGG	1 cut(s)	748
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	33
Eco81I	CCTNAGG	1 cut(s)	779
Eco91I	GGTNACC	1 cut(s)	430
EcoO65I	GGTNACC	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	580, 610
EcoT14I	CCWWGG	1 cut(s)	748
EcoT22I	ATGCAT	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	748
FaeI	CATG	4 cut(s)	208, 752, 842, 962
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FatI	CATG	4 cut(s)	204, 748, 838, 958
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	5 cut(s)	134, 155, 323, 407, 524
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	4 cut(s)	263, 294, 329, 462
GluI	GCNGC	1 cut(s)	276
GsaI	CCCAGC	1 cut(s)	138
GsuI	CTGGAG	2 cut(s)	255, 744
HaeIII	GGCC	1 cut(s)	901
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	211
Hin1II	CATG	4 cut(s)	208, 752, 842, 962
HincII	GTYRAC	2 cut(s)	65, 964
HindII	GTYRAC	2 cut(s)	65, 964
HinfI	GANTC	1 cut(s)	506
HpaI	GTTAAC	1 cut(s)	964
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	4 cut(s)	59, 410, 442, 450
Hpy166II	GTNNAC	6 cut(s)	65, 149, 352, 559, 822, 964
Hpy188I	TCNGA	5 cut(s)	511, 544, 662, 712, 744
Hpy188III	TCNNGA	3 cut(s)	195, 367, 386
Hpy8I	GTNNAC	6 cut(s)	65, 149, 352, 559, 822, 964
Hpy99I	CGWCG	1 cut(s)	644
HpyAV	CCTTC	3 cut(s)	43, 265, 529
HpyCH4III	ACNGT	3 cut(s)	192, 481, 826
HpyCH4V	TGCA	6 cut(s)	125, 177, 227, 278, 515, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 131
HpyF3I	CTNAG	3 cut(s)	111, 779, 954
Hsp92I	GRCGYC	1 cut(s)	211
Hsp92II	CATG	4 cut(s)	208, 752, 842, 962
KspAI	GTTAAC	1 cut(s)	964
Kzo9I	GATC	2 cut(s)	382, 739
LmnI	GCTCC	3 cut(s)	544, 744, 774
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	6 cut(s)	31, 112, 301, 502, 548, 600
MaeI	CTAG	4 cut(s)	263, 294, 329, 462
MaeIII	GTNAC	4 cut(s)	212, 430, 442, 691
MalI	GATC	2 cut(s)	384, 741
MboI	GATC	2 cut(s)	382, 739
MboII	GAAGA	5 cut(s)	26, 28, 583, 767, 866
MfeI	CAATTG	2 cut(s)	228, 342
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	9 cut(s)	50, 228, 342, 424, 519, 606, 676, 864, 907
MnlI	CCTC	6 cut(s)	133, 301, 656, 719, 774, 954
Mph1103I	ATGCAT	1 cut(s)	127
MroXI	GAANNNNTTC	1 cut(s)	858
MseI	TTAA	6 cut(s)	156, 251, 635, 878, 933, 963
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	582, 612
MunI	CAATTG	2 cut(s)	228, 342
MvaI	CCWGG	2 cut(s)	582, 612
MwoI	GCNNNNNNNGC	2 cut(s)	82, 131
NcoI	CCATGG	1 cut(s)	748
NdeII	GATC	2 cut(s)	382, 739
NheI	GCTAGC	1 cut(s)	328
NlaIII	CATG	4 cut(s)	208, 752, 842, 962
NlaIV	GGNNCC	4 cut(s)	6, 746, 776, 785
NmuCI	GTSAC	4 cut(s)	212, 430, 442, 691
NsiI	ATGCAT	1 cut(s)	127
NspI	RCATGY	1 cut(s)	962
PdmI	GAANNNNTTC	1 cut(s)	858
PfeI	GAWTC	1 cut(s)	506
PkrI	GCNGC	1 cut(s)	277
PsiI	TTATAA	1 cut(s)	702
Psp6I	CCWGG	2 cut(s)	580, 610
PspEI	GGTNACC	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	2 cut(s)	580, 610
PspN4I	GGNNCC	4 cut(s)	6, 746, 776, 785
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	280
RsaI	GTAC	5 cut(s)	23, 148, 322, 353, 821
RsaNI	GTAC	5 cut(s)	22, 147, 321, 352, 820
SaqAI	TTAA	6 cut(s)	156, 251, 635, 878, 933, 963
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	2 cut(s)	382, 739
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	582, 612
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	6 cut(s)	31, 112, 301, 502, 548, 600
SfcI	CTRYAG	1 cut(s)	276
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SpeI	ACTAGT	1 cut(s)	293
Sse9I	AATT	9 cut(s)	50, 228, 342, 424, 519, 606, 676, 864, 907
SsiI	CCGC	1 cut(s)	882
SspMI	CTAG	4 cut(s)	263, 294, 329, 462
StyD4I	CCNGG	2 cut(s)	580, 610
StyI	CCWWGG	1 cut(s)	748
TaaI	ACNGT	3 cut(s)	192, 481, 826
TaqI	TCGA	1 cut(s)	39
TasI	AATT	9 cut(s)	50, 228, 342, 424, 519, 606, 676, 864, 907
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	6 cut(s)	156, 251, 635, 878, 933, 963
Tru9I	TTAA	6 cut(s)	156, 251, 635, 878, 933, 963
TscAI	CASTG	2 cut(s)	223, 768
TseFI	GTSAC	4 cut(s)	212, 430, 442, 691
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	4 cut(s)	212, 430, 442, 691
TspDTI	ATGAA	1 cut(s)	824
TspRI	CASTG	2 cut(s)	223, 768
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	3 cut(s)	50, 519, 907
XceI	RCATGY	1 cut(s)	962
XcmI	CCANNNNNNNNNTGG	1 cut(s)	15
XmnI	GAANNNNTTC	1 cut(s)	858
XspI	CTAG	4 cut(s)	263, 294, 329, 462
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.