pycom16g25260

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000792
Physical Location & Seq
Forward (+)
27106411 .. 27107552
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 681 bp
ATGGACATGATCTCATCAGCAGAATGGGAAATGGACGATCCCACTTTTATCAATCAATACGAAATGAACTCTCTGGACTACTCATTTGATGAGCTCGTATTCTCGTCTCTCTCATCTGAGAGCTACTCATCCAACCCAAATTTCACCTCGAAAGCCGCAGCTGCTACACACAACTTCAGCAAAGCATTCATTGAAAATCCCCATCAGACCGGCACTCAGGAAAGGCCAGCAAAACAGCCTAACACTACTAGTTGGAAATCTTGCTCCGCTGACCACATAATTGCTGCCAAAGCTTCTTCTTCTTCCTCGTCACACCTAATTTCGTTTGAGAACTCCGACTCTTCACCTCCAACTACTTCTCAGCTGTACTATGGTCCAGATTGCAAAGTTATCAAGCCAAAGAATGAGGTGGAATATTCTAATGGAAAATTGAACCTTTCAGCTTTGGTTTCCCAAGGTTCCTATGACACCCAAACTTGTTCACCCAATCATGGACAAGGGATCAATCTGAGGGCAGCTACGGTGACTAGAAGTCCTTTACATGCTCAAGATCATGTTCTTGCTGAGAGAAAGCGCCGAGAAAAGCTCAGCCAGCGGTTCATTGCTCTATCTGCCTTACTTCCAGGACTAAAGAAGATGGACAAGGCTTCGGTCCTCGGAGATGATCGATCAAGTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

227

Amino Acids

24.82

Weight (kDa)

6.16

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 156, 267, 595
AclWI GGATC 2 cut(s) 32, 509
AcsI RAATTY 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 160
AfaI GTAC 2 cut(s) 368, 676
AfiI CCNNNNNNNGG 1 cut(s) 491
AgsI TTSAA 2 cut(s) 194, 433
AhdI GACNNNNNGTC 1 cut(s) 531
AhlI ACTAGT 1 cut(s) 248
AjnI CCWGG 1 cut(s) 622
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AluBI AGCT 8 cut(s) 94, 123, 161, 293, 364, 443, 518, 586
AluI AGCT 8 cut(s) 94, 123, 161, 293, 364, 443, 518, 586
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 2 cut(s) 32, 509
AoxI GGCC 1 cut(s) 224
ApeKI GCWGC 4 cut(s) 158, 161, 284, 515
ApoI RAATTY 1 cut(s) 139
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AspLEI GCGC 1 cut(s) 576
AspS9I GGNCC 2 cut(s) 374, 652
AsuHPI GGTGA 4 cut(s) 136, 336, 474, 535
AvaII GGWCC 2 cut(s) 374, 652
BanII GRGCYC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 4 cut(s) 148, 170, 271, 527
BccI CCATC 2 cut(s) 210, 631
BciT130I CCWGG 1 cut(s) 624
BcoDI GTCTC 1 cut(s) 111
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 2 cut(s) 249, 528
BfoI RGCGCY 1 cut(s) 577
BisI GCNGC 5 cut(s) 156, 159, 162, 285, 516
BlpI GCTNAGC 1 cut(s) 587
BlsI GCNGC 5 cut(s) 157, 160, 163, 286, 517
Bme1390I CCNGG 1 cut(s) 624
Bme18I GGWCC 2 cut(s) 374, 652
BmeRI GACNNNNNGTC 1 cut(s) 531
BmgT120I GGNCC 2 cut(s) 374, 652
BmiI GGNNCC 1 cut(s) 460
BmrFI CCNGG 1 cut(s) 624
BplI GAGNNNNNCTC 4 cut(s) 110, 142, 570, 602
Bpu1102I GCTNAGC 1 cut(s) 587
BpuEI CTTGAG 1 cut(s) 531
Bsa29I ATCGAT 1 cut(s) 667
BsaAI YACGTR 1 cut(s) 678
BsaJI CCNNGG 2 cut(s) 454, 655
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse118I RCCGGY 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 600
BseBI CCWGG 1 cut(s) 624
BseCI ATCGAT 1 cut(s) 667
BseDI CCNNGG 2 cut(s) 454, 655
BseGI GGATG 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 491
BseMI GCAATG 1 cut(s) 600
BseMII CTCAG 6 cut(s) 108, 230, 374, 500, 555, 601
BseXI GCAGC 4 cut(s) 148, 170, 271, 527
BshFI GGCC 1 cut(s) 226
BshVI ATCGAT 1 cut(s) 667
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 210
BslI CCNNNNNNNGG 1 cut(s) 491
BsmAI GTCTC 1 cut(s) 111
BsmBI CGTCTC 1 cut(s) 111
BsmI GAATGC 1 cut(s) 185
BsnI GGCC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 6 cut(s) 9, 37, 501, 550, 664, 668
Bsp1720I GCTNAGC 1 cut(s) 587
BspACI CCGC 3 cut(s) 156, 267, 595
BspANI GGCC 1 cut(s) 226
BspCNI CTCAG 6 cut(s) 109, 229, 373, 501, 556, 600
BspDI ATCGAT 1 cut(s) 667
BspLI GGNNCC 1 cut(s) 460
BspPI GGATC 2 cut(s) 32, 509
BsrDI GCAATG 1 cut(s) 600
BsrFI RCCGGY 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 454, 655
BssMI GATC 6 cut(s) 9, 37, 501, 550, 664, 668
BssT1I CCWWGG 1 cut(s) 454
Bst2UI CCWGG 1 cut(s) 624
Bst4CI ACNGT 1 cut(s) 523
Bst6I CTCTTC 1 cut(s) 346
BstBAI YACGTR 1 cut(s) 678
BstC8I GCNNGC 2 cut(s) 228, 593
BstDEI CTNAG 6 cut(s) 117, 216, 360, 509, 564, 587
BstF5I GGATG 1 cut(s) 128
BstH2I RGCGCY 1 cut(s) 577
BstHHI GCGC 1 cut(s) 576
BstKTI GATC 6 cut(s) 12, 40, 504, 553, 667, 671
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 6 cut(s) 9, 37, 501, 550, 664, 668
BstMWI GCNNNNNNNGC 4 cut(s) 161, 290, 592, 611
BstNI CCWGG 1 cut(s) 624
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 1 cut(s) 622
BstV1I GCAGC 4 cut(s) 148, 170, 271, 527
Bsu15I ATCGAT 1 cut(s) 667
BsuRI GGCC 1 cut(s) 226
BsuTUI ATCGAT 1 cut(s) 667
BtsCI GGATG 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 228, 593
CfoI GCGC 1 cut(s) 576
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 2 cut(s) 374, 652
ClaI ATCGAT 1 cut(s) 667
Csp6I GTAC 2 cut(s) 367, 675
CviAII CATG 4 cut(s) 7, 491, 542, 554
CviQI GTAC 2 cut(s) 367, 675
DdeI CTNAG 6 cut(s) 117, 216, 360, 509, 564, 587
DpnI GATC 6 cut(s) 11, 39, 503, 552, 666, 670
DpnII GATC 6 cut(s) 9, 37, 501, 550, 664, 668
DriI GACNNNNNGTC 1 cut(s) 531
Eam1104I CTCTTC 1 cut(s) 346
Eam1105I GACNNNNNGTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 346
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 454
Eco24I GRGCYC 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 374, 652
Eco53kI GAGCTC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 622
EcoT14I CCWWGG 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 454
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 4 cut(s) 10, 494, 545, 557
FaiI YATR 7 cut(s) 8, 278, 372, 465, 492, 543, 555
FatI CATG 4 cut(s) 6, 490, 541, 553
Fnu4HI GCNGC 5 cut(s) 156, 159, 162, 285, 516
FokI GGATG 1 cut(s) 115
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 5 cut(s) 156, 159, 162, 285, 516
FspBI CTAG 2 cut(s) 249, 528
GlaI GCGC 1 cut(s) 575
GluI GCNGC 5 cut(s) 156, 159, 162, 285, 516
HaeII RGCGCY 1 cut(s) 577
HaeIII GGCC 1 cut(s) 226
HapII CCGG 1 cut(s) 210
HhaI GCGC 1 cut(s) 576
Hin1II CATG 4 cut(s) 10, 494, 545, 557
Hin6I GCGC 1 cut(s) 574
HinP1I GCGC 1 cut(s) 574
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 1 cut(s) 338
HpaII CCGG 1 cut(s) 210
HphI GGTGA 4 cut(s) 136, 336, 474, 535
Hpy166II GTNNAC 1 cut(s) 482
Hpy188I TCNGA 5 cut(s) 118, 207, 337, 510, 659
Hpy188III TCNNGA 4 cut(s) 74, 218, 377, 548
Hpy8I GTNNAC 1 cut(s) 482
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 1 cut(s) 677
HpyCH4V TGCA 1 cut(s) 384
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 290, 592, 611
HpyF3I CTNAG 6 cut(s) 117, 216, 360, 509, 564, 587
HpySE526I ACGT 1 cut(s) 677
Hsp92II CATG 4 cut(s) 10, 494, 545, 557
HspAI GCGC 1 cut(s) 574
Kzo9I GATC 6 cut(s) 9, 37, 501, 550, 664, 668
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 8 cut(s) 59, 203, 223, 240, 390, 605, 609, 636
Lsp1109I GCAGC 4 cut(s) 148, 170, 271, 527
MaeI CTAG 2 cut(s) 249, 528
MaeII ACGT 1 cut(s) 677
MaeIII GTNAC 2 cut(s) 309, 523
MalI GATC 6 cut(s) 11, 39, 503, 552, 666, 670
MboI GATC 6 cut(s) 9, 37, 501, 550, 664, 668
MboII GAAGA 5 cut(s) 288, 291, 294, 333, 646
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 4 cut(s) 139, 279, 318, 428
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 4 cut(s) 156, 233, 360, 374
MnlI CCTC 6 cut(s) 157, 316, 357, 400, 504, 665
MspA1I CMGCKG 4 cut(s) 161, 269, 364, 595
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 624
Mva1269I GAATGC 1 cut(s) 185
MvaI CCWGG 1 cut(s) 624
MwoI GCNNNNNNNGC 4 cut(s) 161, 290, 592, 611
NdeII GATC 6 cut(s) 9, 37, 501, 550, 664, 668
NlaIII CATG 4 cut(s) 10, 494, 545, 557
NlaIV GGNNCC 1 cut(s) 460
NmeAIII GCCGAG 1 cut(s) 602
NmuCI GTSAC 2 cut(s) 309, 523
NspI RCATGY 1 cut(s) 545
PctI GAATGC 1 cut(s) 185
PfoI TCCNGGA 1 cut(s) 622
PkrI GCNGC 5 cut(s) 157, 160, 163, 286, 517
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
Ppu21I YACGTR 1 cut(s) 678
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 622
PspGI CCWGG 1 cut(s) 622
PspN4I GGNNCC 1 cut(s) 460
PspPI GGNCC 2 cut(s) 374, 652
PvuII CAGCTG 2 cut(s) 161, 364
RsaI GTAC 2 cut(s) 368, 676
RsaNI GTAC 2 cut(s) 367, 675
SacI GAGCTC 1 cut(s) 96
SatI GCNGC 5 cut(s) 156, 159, 162, 285, 516
Sau3AI GATC 6 cut(s) 9, 37, 501, 550, 664, 668
Sau96I GGNCC 2 cut(s) 374, 652
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 624
SduI GDGCHC 1 cut(s) 96
SinI GGWCC 2 cut(s) 374, 652
SmlI CTYRAG 1 cut(s) 546
SmoI CTYRAG 1 cut(s) 546
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 4 cut(s) 139, 279, 318, 428
SsiI CCGC 3 cut(s) 156, 267, 595
SspI AATATT 1 cut(s) 416
SspMI CTAG 2 cut(s) 249, 528
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 622
StyI CCWWGG 1 cut(s) 454
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 1 cut(s) 680
TaqI TCGA 2 cut(s) 149, 667
TaqII GACCGA 1 cut(s) 640
TasI AATT 4 cut(s) 139, 279, 318, 428
TatI WGTACW 1 cut(s) 366
TauI GCSGC 1 cut(s) 158
TseFI GTSAC 2 cut(s) 309, 523
TseI GCWGC 4 cut(s) 158, 161, 284, 515
Tsp45I GTSAC 2 cut(s) 309, 523
TspDTI ATGAA 3 cut(s) 80, 178, 589
VpaK11BI GGWCC 2 cut(s) 374, 652
XapI RAATTY 1 cut(s) 139
XceI RCATGY 1 cut(s) 545
XspI CTAG 2 cut(s) 249, 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.