pycom17g14020

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001765
Physical Location & Seq
Reverse (-)
11622567 .. 11623318
752 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 642 bp
ATGGCGTATAACGTTTTTGGCAACCCCATCACGAATGAAACTTTGGAGGGGATGCCAGAGTATGCCGGCAAGACAATAGGAAAATTAGACAGGGCACGCGTGGCACTGAATATGAAAAATGCCGCGGAAAAGGATTTCAACGCTCGAACACATGTGGAGAAATTGAAGGAGCAGTATGGCGATGGAGTGTCCACACTCTGCCTTGTTTACAATGCAACTGGGGATACCATAACATATTCTGATAAGAAAGATTGGTTGGGGCACATCGGAAAGGCACCATACGCAGCACTGATTGCAAATGGTCAGTGGGGTGCGTTTCTGCACGTCAAAACTGCCGGTGAGCATTCTGGATCCACTGCGGCTGTTGTGTACCGAGGCACGGATAAGAATGGTACCGAATGTGATTGGATGTTGTCCTGGAGCAACCCATGGGACAGGACTAAATGGGACAATACGGTCTATACAGAGATTCGCGAACCTGGCCACTTTGAAAAGGGCGGAATTTGGGACGTAATCTATAATTTCTTGGGTCAAACTCGCCCGTACAGCAAGGACACCTGGAATGGATGCGTGTCAATCATGTCAACTGGCAGTGACACTTCCCCAATTGTTGAAGCAATACTCACTTTAGAAAATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.61

Weight (kDa)

5.55

Isoelectric Point (pI)

15.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nakanori PF21230 32 - 197 5.1e-52 Nakanori-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 455
Acc65I GGTACC 1 cut(s) 392
AccB1I GGYRCC 2 cut(s) 274, 392
AccII CGCG 3 cut(s) 99, 125, 474
AciI CCGC 4 cut(s) 123, 125, 359, 498
AclI AACGTT 1 cut(s) 12
AclWI GGATC 2 cut(s) 345, 358
AcoI YGGCCR 1 cut(s) 481
AcsI RAATTY 1 cut(s) 501
AfaI GTAC 3 cut(s) 371, 394, 545
AfiI CCNNNNNNNGG 1 cut(s) 379
AflIII ACRYGT 2 cut(s) 97, 151
AgsI TTSAA 4 cut(s) 139, 166, 491, 614
AjiI CACGTC 1 cut(s) 325
AjnI CCWGG 3 cut(s) 416, 478, 557
AjuI GAANNNNNNNTTGG 4 cut(s) 26, 58, 239, 271
AlwI GGATC 2 cut(s) 345, 358
AoxI GGCC 1 cut(s) 481
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 501
Asp718I GGTACC 1 cut(s) 392
AsuHPI GGTGA 1 cut(s) 350
BaeGI GKGCMC 2 cut(s) 97, 264
BalI TGGCCA 1 cut(s) 483
BamHI GGATCC 1 cut(s) 350
BanI GGYRCC 2 cut(s) 274, 392
BbvI GCAGC 1 cut(s) 296
BccI CCATC 2 cut(s) 35, 176
BciT130I CCWGG 3 cut(s) 418, 480, 559
BciVI GTATCC 1 cut(s) 217
BfuI GTATCC 1 cut(s) 217
BisI GCNGC 3 cut(s) 123, 285, 360
BlsI GCNGC 3 cut(s) 124, 286, 361
Bme1390I CCNGG 3 cut(s) 418, 480, 559
BmgBI CACGTC 1 cut(s) 325
BmiI GGNNCC 3 cut(s) 276, 352, 394
BmrFI CCNGG 3 cut(s) 418, 480, 559
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 2 cut(s) 42, 557
BmuI ACTGGG 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 439
BsaJI CCNNGG 3 cut(s) 123, 373, 428
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse118I RCCGGY 2 cut(s) 65, 335
Bse1I ACTGG 2 cut(s) 223, 592
BseBI CCWGG 3 cut(s) 418, 480, 559
BseDI CCNNGG 3 cut(s) 123, 373, 428
BseGI GGATG 3 cut(s) 57, 414, 572
BseLI CCNNNNNNNGG 1 cut(s) 379
BseNI ACTGG 2 cut(s) 223, 592
BseSI GKGCMC 2 cut(s) 97, 264
BseXI GCAGC 1 cut(s) 296
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 3 cut(s) 99, 125, 474
BshFI GGCC 1 cut(s) 483
BshNI GGYRCC 2 cut(s) 274, 392
BsiSI CCGG 2 cut(s) 66, 336
BslFI GGGAC 3 cut(s) 446, 461, 521
BslI CCNNNNNNNGG 1 cut(s) 379
BsmFI GGGAC 3 cut(s) 446, 461, 521
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 1 cut(s) 483
Bsp1286I GDGCHC 2 cut(s) 97, 264
Bsp143I GATC 1 cut(s) 350
Bsp19I CCATGG 1 cut(s) 428
Bsp68I TCGCGA 1 cut(s) 474
BspACI CCGC 4 cut(s) 123, 125, 359, 498
BspANI GGCC 1 cut(s) 483
BspFNI CGCG 3 cut(s) 99, 125, 474
BspLI GGNNCC 3 cut(s) 276, 352, 394
BspPI GGATC 2 cut(s) 345, 358
BspT107I GGYRCC 2 cut(s) 274, 392
BsrFI RCCGGY 2 cut(s) 65, 335
BsrI ACTGG 2 cut(s) 223, 592
BssAI RCCGGY 2 cut(s) 65, 335
BssECI CCNNGG 3 cut(s) 123, 373, 428
BssMI GATC 1 cut(s) 350
BssT1I CCWWGG 1 cut(s) 428
Bst2UI CCWGG 3 cut(s) 418, 480, 559
Bst4CI ACNGT 1 cut(s) 457
BstAPI GCANNNNNTGC 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 67, 97
BstDSI CCRYGG 2 cut(s) 123, 428
BstF5I GGATG 3 cut(s) 57, 414, 572
BstFNI CGCG 3 cut(s) 99, 125, 474
BstKTI GATC 1 cut(s) 353
BstMBI GATC 1 cut(s) 350
BstMWI GCNNNNNNNGC 5 cut(s) 101, 281, 293, 480, 546
BstNI CCWGG 3 cut(s) 418, 480, 559
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 3 cut(s) 416, 478, 557
BstSLI GKGCMC 2 cut(s) 97, 264
BstUI CGCG 3 cut(s) 99, 125, 474
BstV1I GCAGC 1 cut(s) 296
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
BsuI GTATCC 1 cut(s) 217
BsuRI GGCC 1 cut(s) 483
BtgI CCRYGG 2 cut(s) 123, 428
BtgZI GCGATG 1 cut(s) 195
BtrI CACGTC 1 cut(s) 325
BtsCI GGATG 3 cut(s) 57, 414, 572
BtsI GCAGTG 2 cut(s) 354, 598
BtsIMutI CAGTG 5 cut(s) 104, 287, 311, 354, 598
BtuMI TCGCGA 1 cut(s) 474
Cac8I GCNNGC 2 cut(s) 67, 97
Cfr10I RCCGGY 2 cut(s) 65, 335
Cfr42I CCGCGG 1 cut(s) 126
Csp6I GTAC 3 cut(s) 370, 393, 544
CviAII CATG 3 cut(s) 152, 429, 580
CviJI RGCY 2 cut(s) 362, 483
CviKI_1 RGCY 2 cut(s) 362, 483
CviQI GTAC 3 cut(s) 370, 393, 544
DpnI GATC 1 cut(s) 352
DpnII GATC 1 cut(s) 350
DrdI GACNNNNNNGTC 1 cut(s) 455
DseDI GACNNNNNNGTC 1 cut(s) 455
EaeI YGGCCR 1 cut(s) 481
EciI GGCGGA 1 cut(s) 513
Eco130I CCWWGG 1 cut(s) 428
EcoRII CCWGG 3 cut(s) 416, 478, 557
EcoT14I CCWWGG 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 428
FaeI CATG 3 cut(s) 155, 432, 583
FaqI GGGAC 3 cut(s) 446, 461, 521
FatI CATG 3 cut(s) 151, 428, 579
Fnu4HI GCNGC 3 cut(s) 123, 285, 360
FokI GGATG 3 cut(s) 64, 421, 579
Fsp4HI GCNGC 3 cut(s) 123, 285, 360
GluI GCNGC 3 cut(s) 123, 285, 360
GsuI CTGGAG 1 cut(s) 439
HaeIII GGCC 1 cut(s) 483
HapII CCGG 2 cut(s) 66, 336
Hin1II CATG 3 cut(s) 155, 432, 583
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HinfI GANTC 1 cut(s) 469
HpaII CCGG 2 cut(s) 66, 336
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 4 cut(s) 192, 208, 370, 585
Hpy188I TCNGA 2 cut(s) 241, 269
Hpy188III TCNNGA 3 cut(s) 31, 348, 473
Hpy8I GTNNAC 4 cut(s) 192, 208, 370, 585
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 457
HpyCH4IV ACGT 3 cut(s) 12, 324, 510
HpyCH4V TGCA 3 cut(s) 215, 296, 322
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 281, 293, 480, 546
HpySE526I ACGT 3 cut(s) 12, 324, 510
Hsp92II CATG 3 cut(s) 155, 432, 583
KpnI GGTACC 1 cut(s) 396
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
KspI CCGCGG 1 cut(s) 126
Kzo9I GATC 1 cut(s) 350
LmnI GCTCC 2 cut(s) 169, 420
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 2 cut(s) 42, 557
MaeII ACGT 3 cut(s) 12, 324, 510
MaeIII GTNAC 1 cut(s) 593
MalI GATC 1 cut(s) 352
MboI GATC 1 cut(s) 350
MfeI CAATTG 1 cut(s) 606
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 2 cut(s) 97, 264
MlsI TGGCCA 1 cut(s) 483
MluCI AATT 5 cut(s) 83, 161, 501, 520, 606
MluI ACGCGT 1 cut(s) 97
MluNI TGGCCA 1 cut(s) 483
MnlI CCTC 2 cut(s) 40, 368
Mox20I TGGCCA 1 cut(s) 483
MroNI GCCGGC 1 cut(s) 65
MscI TGGCCA 1 cut(s) 483
MseI TTAA 1 cut(s) 640
Msp20I TGGCCA 1 cut(s) 483
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 2 cut(s) 66, 336
MspR9I CCNGG 3 cut(s) 418, 480, 559
MunI CAATTG 1 cut(s) 606
Mva1269I GAATGC 1 cut(s) 343
MvaI CCWGG 3 cut(s) 418, 480, 559
MvnI CGCG 3 cut(s) 99, 125, 474
MwoI GCNNNNNNNGC 5 cut(s) 101, 281, 293, 480, 546
NaeI GCCGGC 1 cut(s) 67
NcoI CCATGG 1 cut(s) 428
NdeII GATC 1 cut(s) 350
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 3 cut(s) 155, 432, 583
NlaIV GGNNCC 3 cut(s) 276, 352, 394
NmuCI GTSAC 1 cut(s) 593
NruI TCGCGA 1 cut(s) 474
NspI RCATGY 1 cut(s) 155
PciI ACATGT 1 cut(s) 151
PctI GAATGC 1 cut(s) 343
PdiI GCCGGC 1 cut(s) 67
PfeI GAWTC 1 cut(s) 469
PfoI TCCNGGA 1 cut(s) 416
PkrI GCNGC 3 cut(s) 124, 286, 361
PscI ACATGT 1 cut(s) 151
Psp1406I AACGTT 1 cut(s) 12
Psp6I CCWGG 3 cut(s) 416, 478, 557
PspGI CCWGG 3 cut(s) 416, 478, 557
PspN4I GGNNCC 3 cut(s) 276, 352, 394
PsuI RGATCY 1 cut(s) 350
RruI TCGCGA 1 cut(s) 474
RsaI GTAC 3 cut(s) 371, 394, 545
RsaNI GTAC 3 cut(s) 370, 393, 544
SacII CCGCGG 1 cut(s) 126
SaqAI TTAA 1 cut(s) 640
SatI GCNGC 3 cut(s) 123, 285, 360
Sau3AI GATC 1 cut(s) 350
ScrFI CCNGG 3 cut(s) 418, 480, 559
SduI GDGCHC 2 cut(s) 97, 264
SetI ASST 5 cut(s) 15, 327, 481, 513, 560
SfaNI GCATC 2 cut(s) 42, 557
Sfr303I CCGCGG 1 cut(s) 126
SgrBI CCGCGG 1 cut(s) 126
Sse9I AATT 5 cut(s) 83, 161, 501, 520, 606
SsiI CCGC 4 cut(s) 123, 125, 359, 498
StyD4I CCNGG 3 cut(s) 416, 478, 557
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 1 cut(s) 457
TaiI ACGT 3 cut(s) 15, 327, 513
TaqI TCGA 1 cut(s) 145
TasI AATT 5 cut(s) 83, 161, 501, 520, 606
TauI GCSGC 2 cut(s) 125, 362
TfiI GAWTC 1 cut(s) 469
Tru1I TTAA 1 cut(s) 640
Tru9I TTAA 1 cut(s) 640
TscAI CASTG 5 cut(s) 111, 294, 311, 361, 598
TseFI GTSAC 1 cut(s) 593
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 593
TspDTI ATGAA 2 cut(s) 51, 128
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 5 cut(s) 111, 294, 311, 361, 598
XapI RAATTY 1 cut(s) 501
XceI RCATGY 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.