Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001765

Physical Location & Seq

Genomic Coordinates Reverse (-)

11663116 .. 11663951

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAGATGGTGAGAGACGTGTTTGGCAACCCCATCACAACCGCAACTTTGGAGGGTATGCCAGAGTATAGATCTGAGTCTGGGGAAATAACAAGAATCGAAAGGGCACGCGCGGCAATGGTTATGCAAAAAGCCAGGGGAAAGGACTACGTGAAGGCACGAGCACACGCCGAGCATTTGAAGGACGAATCCGGTACAAAACTCGCCAATCTCGTCCTTATTTACAATGCAACAGGAGACACCGTTAGATGTGTTGGTCAGAAAGATTGGATTGGCCTCGACGTAGAGTACCCACCACTGATTGGAAATGGCCAGTGGGCTGCGTTTCTGACCGTCAAAAACCCCAGTTATGGTTATGGCTCTACTTCCGCTGTTGTGTATCGCGGCAAGAACGCGGATGGTACCAACTGCGACTATATGCTGTCTTGGAGCAACCCGGCGGACAGGGTTAAATGGGACAACACGGTCTGTACGCAGGTTCGCAGAACTAACCACTTTGACAATGGAGCAAATTGGAGTGAAATCTACGATCACTTGTGTACAACTCGCTCGTCCCAAGAGGATACTTGGAATGGATGTACGTCAATCATCACAACTGACAGTGCTGTTTTTGCTTTAGTTGAGGGAACACTCACTTTGGAAGATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

24.02

Weight (kDa)

5.26

Isoelectric Point (pI)

24.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nakanori	PF21230	38 - 199	1.1e-27	Nakanori-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001765)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g36010
malus_domestica	MD05G1102400.v1.1 MD09G1162600.v1.1 MD09G1162700.v1.1 MD09G1162900.v1.1 MD09G1163100.v1.1 MD17G1147700.v1.1 MD17G1148000.v1.1 MD17G1148100.v1.1 MD17G1148200.v1.1
prunus_persica	Prupe.1G577300_v2.0.a1 Prupe.2G116800_v2.0.a1 Prupe.2G116900_v2.0.a1
pyrus_communis	pycom09g08020 pycom09g08070 pycom17g14020 pycom17g14090 pycom17g14130
rosa_laevigata	RLG00000019195 RLG00000019197 RLG00000020315 RLG00000020317 RLG00000020337
rosa_multiflora	Rmu_sc0001516.1_g000044 Rmu_sc0001516.1_g000051 Rmu_sc0001516.1_g000054 Rmu_sc0004032.1_g000004
rosa_roxburghii	Rroxscaffold_2G00098880 Rroxscaffold_2G00098890 Rroxscaffold_2G00099060 Rroxscaffold_2G00099100 Rroxscaffold_2G00099110 Rroxscaffold_2G00101280
rosa_rugosa	Rorug02G0403500 Rorug02G0403600 Rorug02G0405600 Rorug02G0405700
rosa_samantha	Rh2AG461500 Rh2AG461700 Rh2AG464500 Rh2BG477400 Rh2CG448600 Rh2CG448700 Rh2CG451100 Rh2CG451200 Rh2DG486200 Rh5AG501100
rosa_wichuraiana	Rw2G037860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	464
Acc36I	ACCTGC	1 cut(s)	466
Acc65I	GGTACC	1 cut(s)	401
AccB1I	GGYRCC	1 cut(s)	401
AccB7I	CCANNNNNTGG	1 cut(s)	302
AccII	CGCG	4 cut(s)	111, 113, 384, 395
AciI	CCGC	6 cut(s)	42, 113, 369, 384, 395, 440
AcoI	YGGCCR	1 cut(s)	310
AfaI	GTAC	6 cut(s)	196, 290, 403, 472, 541, 580
AfiI	CCNNNNNNNGG	2 cut(s)	302, 350
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	1 cut(s)	181
AjiI	CACGTC	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	134
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	2 cut(s)	9, 231
AoxI	GGCC	2 cut(s)	274, 310
ApeKI	GCWGC	1 cut(s)	320
Asp718I	GGTACC	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	22
BaeGI	GKGCMC	1 cut(s)	109
BalI	TGGCCA	1 cut(s)	312
BanI	GGYRCC	1 cut(s)	401
BauI	CACGAG	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	2 cut(s)	41, 392
BciT130I	CCWGG	1 cut(s)	136
BciVI	GTATCC	1 cut(s)	556
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	2 cut(s)	9, 231
BfuAI	ACCTGC	1 cut(s)	466
BfuI	GTATCC	1 cut(s)	556
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	3 cut(s)	114, 321, 385
BlsI	GCNGC	3 cut(s)	115, 322, 386
Bme1390I	CCNGG	2 cut(s)	136, 437
BmgBI	CACGTC	1 cut(s)	19
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	2 cut(s)	136, 437
BmrI	ACTGGG	1 cut(s)	339
BmuI	ACTGGG	1 cut(s)	339
BpuMI	CCSGG	1 cut(s)	437
BsaAI	YACGTR	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	191
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 350
Bse1I	ACTGG	2 cut(s)	313, 345
Bse3DI	GCAATG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	2 cut(s)	403, 581
BseLI	CCNNNNNNNGG	2 cut(s)	302, 350
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	313, 345
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	307
Bsh1236I	CGCG	4 cut(s)	111, 113, 384, 395
BshFI	GGCC	2 cut(s)	276, 312
BshNI	GGYRCC	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	192, 437
BslFI	GGGAC	2 cut(s)	470, 538
BslI	CCNNNNNNNGG	2 cut(s)	302, 350
BsmAI	GTCTC	2 cut(s)	9, 231
BsmBI	CGTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	470, 538
BsnI	GGCC	2 cut(s)	276, 312
Bsp1286I	GDGCHC	2 cut(s)	109, 166
Bsp1407I	TGTACA	1 cut(s)	539
Bsp143I	GATC	2 cut(s)	71, 529
BspACI	CCGC	6 cut(s)	42, 113, 369, 384, 395, 440
BspANI	GGCC	2 cut(s)	276, 312
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	4 cut(s)	111, 113, 384, 395
BspLI	GGNNCC	1 cut(s)	403
BspMI	ACCTGC	1 cut(s)	466
BspT107I	GGYRCC	1 cut(s)	401
BsrDI	GCAATG	1 cut(s)	123
BsrGI	TGTACA	1 cut(s)	539
BsrI	ACTGG	2 cut(s)	313, 345
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	71, 529
BssSI	CACGAG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	136
Bst4CI	ACNGT	4 cut(s)	244, 334, 466, 602
BstAUI	TGTACA	1 cut(s)	539
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	403, 581
BstFNI	CGCG	4 cut(s)	111, 113, 384, 395
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	2 cut(s)	74, 532
BstMAI	GTCTC	2 cut(s)	9, 231
BstMBI	GATC	2 cut(s)	71, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 611
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	2 cut(s)	134, 435
BstSLI	GKGCMC	1 cut(s)	109
BstUI	CGCG	4 cut(s)	111, 113, 384, 395
BstV1I	GCAGC	1 cut(s)	307
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	2 cut(s)	276, 312
BtrI	CACGTC	1 cut(s)	19
BtsCI	GGATG	2 cut(s)	403, 581
BtsIMutI	CAGTG	3 cut(s)	296, 320, 607
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	1 cut(s)	109
CfoI	GCGC	1 cut(s)	113
Csp6I	GTAC	6 cut(s)	195, 289, 402, 471, 540, 579
CviJI	RGCY	5 cut(s)	134, 276, 312, 320, 360
CviKI_1	RGCY	5 cut(s)	134, 276, 312, 320, 360
CviQI	GTAC	6 cut(s)	195, 289, 402, 471, 540, 579
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	2 cut(s)	73, 531
DpnII	GATC	2 cut(s)	71, 529
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	310
EciI	GGCGGA	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	134
Esp3I	CGTCTC	1 cut(s)	9
FaiI	YATR	7 cut(s)	59, 69, 125, 351, 357, 417, 419
FaqI	GGGAC	2 cut(s)	470, 538
Fnu4HI	GCNGC	3 cut(s)	114, 321, 385
FokI	GGATG	2 cut(s)	410, 588
Fsp4HI	GCNGC	3 cut(s)	114, 321, 385
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	3 cut(s)	114, 321, 385
HaeIII	GGCC	2 cut(s)	276, 312
HapII	CCGG	2 cut(s)	192, 437
HhaI	GCGC	1 cut(s)	113
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	3 cut(s)	77, 96, 188
HpaII	CCGG	2 cut(s)	192, 437
HphI	GGTGA	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	540
Hpy188I	TCNGA	4 cut(s)	76, 261, 330, 650
Hpy8I	GTNNAC	1 cut(s)	540
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	2 cut(s)	148, 175
HpyCH4III	ACNGT	4 cut(s)	244, 334, 466, 602
HpyCH4IV	ACGT	4 cut(s)	18, 150, 282, 581
HpyCH4V	TGCA	2 cut(s)	127, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 611
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	4 cut(s)	18, 150, 282, 581
HspAI	GCGC	1 cut(s)	111
KpnI	GGTACC	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	71, 529
LmnI	GCTCC	2 cut(s)	429, 506
Lsp1109I	GCAGC	1 cut(s)	307
MaeII	ACGT	4 cut(s)	18, 150, 282, 581
MalI	GATC	2 cut(s)	73, 531
MboI	GATC	2 cut(s)	71, 529
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	2 cut(s)	109, 166
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	1 cut(s)	511
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	1 cut(s)	86
MnlI	CCTC	4 cut(s)	46, 287, 553, 616
Mox20I	TGGCCA	1 cut(s)	312
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	1 cut(s)	450
Msp20I	TGGCCA	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	371
MspI	CCGG	2 cut(s)	192, 437
MspR9I	CCNGG	2 cut(s)	136, 437
MvaI	CCWGG	1 cut(s)	136
MvnI	CGCG	4 cut(s)	111, 113, 384, 395
MwoI	GCNNNNNNNGC	2 cut(s)	113, 611
NciI	CCSGG	1 cut(s)	437
NdeII	GATC	2 cut(s)	71, 529
NlaIV	GGNNCC	1 cut(s)	403
NmeAIII	GCCGAG	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	96, 188
PflMI	CCANNNNNTGG	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	115, 322, 386
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Ppu21I	YACGTR	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	403
PsuI	RGATCY	1 cut(s)	71
RsaI	GTAC	6 cut(s)	196, 290, 403, 472, 541, 580
RsaNI	GTAC	6 cut(s)	195, 289, 402, 471, 540, 579
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	3 cut(s)	114, 321, 385
Sau3AI	GATC	2 cut(s)	71, 529
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	136, 437
SduI	GDGCHC	2 cut(s)	109, 166
SetI	ASST	5 cut(s)	21, 153, 285, 480, 584
Sse9I	AATT	1 cut(s)	511
SsiI	CCGC	6 cut(s)	42, 113, 369, 384, 395, 440
StyD4I	CCNGG	2 cut(s)	134, 435
TaaI	ACNGT	4 cut(s)	244, 334, 466, 602
TaiI	ACGT	4 cut(s)	21, 153, 285, 584
TaqI	TCGA	2 cut(s)	99, 279
TasI	AATT	1 cut(s)	511
TatI	WGTACW	1 cut(s)	539
TauI	GCSGC	2 cut(s)	116, 387
TfiI	GAWTC	2 cut(s)	96, 188
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	3 cut(s)	303, 320, 607
TseI	GCWGC	1 cut(s)	320
TspRI	CASTG	3 cut(s)	303, 320, 607
Van91I	CCANNNNNTGG	1 cut(s)	302
XcmI	CCANNNNNNNNNTGG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.