pycom17g14130

23 kDa jasmonate-induced protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001765
Physical Location & Seq
Reverse (-)
11700732 .. 11701595
864 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 681 bp
ATGGAGATGGTGAGAGACGTGTTTGGCAACCCCATCACAACCGCAACTTTGGAGGGTATGCCAGAGTATAGATCTGAGTCTGGGGAAATAACAAGAATCGAAAGGGCACGCGCGGCAATGGTTATGCAAAAAGCCAGGGGAAAGGACTACGTGAAGGCACGAGCACACGCCGAGCATTTGAAGGACGAATCCGGTACAAAACTCGCCAATCTCGTCCTTATTTACAATGCAACAGGAGACACCGTTAGATGTGTTGGTCAGAAAGATTGGATTGGCCTCGACGTAGAGTACCCACCACTGATTGGAAATGGCCAGTGGGCTGCGTTTCTGACCGTCAAAAACCCCAGTTATGGTTATGGCTCTACTTCCGCTGTTGTGTATCGCGGCAAGAACGCCGATGGTACCAACTGCGACTATATGCTGTCTTGGAGCAACCCGGCGAACAGGGTTAAATGGGACAACGCGGTCTGTACGCAGGTTCGCAGAACTAACCACTTTGACAAGAGAGCAACTTGGAGTGAAATCTACAATTACTTGGATACTTTGAGTGAAATCTGCAATCACTTGGATACAACTCGCTCGTCCCAAGAGGATACATGGAATGGATGTACGTCAATCATCACAACTGACAGTGCTGTTTTTGCAGTGGTTGAGGGAACACTCACTTTAGAAGACGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.24

Weight (kDa)

5.44

Isoelectric Point (pI)

24.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nakanori PF21230 38 - 184 2.2e-27 Nakanori-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 464
AatII GACGTC 1 cut(s) 678
Acc36I ACCTGC 1 cut(s) 466
Acc65I GGTACC 1 cut(s) 401
AccB1I GGYRCC 1 cut(s) 401
AccB7I CCANNNNNTGG 1 cut(s) 302
AccII CGCG 4 cut(s) 111, 113, 384, 464
AciI CCGC 5 cut(s) 42, 113, 369, 384, 464
AcoI YGGCCR 1 cut(s) 310
AcyI GRCGYC 1 cut(s) 675
AfaI GTAC 5 cut(s) 196, 290, 403, 472, 610
AfiI CCNNNNNNNGG 2 cut(s) 302, 350
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 1 cut(s) 181
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 1 cut(s) 134
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 2 cut(s) 9, 231
AoxI GGCC 2 cut(s) 274, 310
ApeKI GCWGC 1 cut(s) 320
Asp718I GGTACC 1 cut(s) 401
AspLEI GCGC 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 437
AsuHPI GGTGA 1 cut(s) 22
BaeGI GKGCMC 1 cut(s) 109
BalI TGGCCA 1 cut(s) 312
BanI GGYRCC 1 cut(s) 401
BauI CACGAG 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 307
BccI CCATC 2 cut(s) 41, 392
BciT130I CCWGG 1 cut(s) 136
BciVI GTATCC 3 cut(s) 532, 562, 586
BcnI CCSGG 1 cut(s) 437
BcoDI GTCTC 2 cut(s) 9, 231
BfuAI ACCTGC 1 cut(s) 466
BfuI GTATCC 3 cut(s) 532, 562, 586
BglII AGATCT 1 cut(s) 71
BisI GCNGC 3 cut(s) 114, 321, 385
BlsI GCNGC 3 cut(s) 115, 322, 386
Bme1390I CCNGG 2 cut(s) 136, 437
BmgBI CACGTC 1 cut(s) 19
BmiI GGNNCC 1 cut(s) 403
BmrFI CCNGG 2 cut(s) 136, 437
BmrI ACTGGG 1 cut(s) 339
BmuI ACTGGG 1 cut(s) 339
BpuMI CCSGG 1 cut(s) 437
BsaAI YACGTR 1 cut(s) 151
BsaHI GRCGYC 1 cut(s) 675
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 191
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 350
Bse1I ACTGG 2 cut(s) 313, 345
Bse3DI GCAATG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 611
BseLI CCNNNNNNNGG 2 cut(s) 302, 350
BseMI GCAATG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 313, 345
BseSI GKGCMC 1 cut(s) 109
BseXI GCAGC 1 cut(s) 307
Bsh1236I CGCG 4 cut(s) 111, 113, 384, 464
BshFI GGCC 2 cut(s) 276, 312
BshNI GGYRCC 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 166
BsiSI CCGG 2 cut(s) 192, 437
BslFI GGGAC 2 cut(s) 470, 568
BslI CCNNNNNNNGG 2 cut(s) 302, 350
BsmAI GTCTC 2 cut(s) 9, 231
BsmBI CGTCTC 1 cut(s) 9
BsmFI GGGAC 2 cut(s) 470, 568
BsnI GGCC 2 cut(s) 276, 312
Bsp1286I GDGCHC 2 cut(s) 109, 166
Bsp143I GATC 1 cut(s) 71
BspACI CCGC 5 cut(s) 42, 113, 369, 384, 464
BspANI GGCC 2 cut(s) 276, 312
BspCNI CTCAG 1 cut(s) 67
BspFNI CGCG 4 cut(s) 111, 113, 384, 464
BspLI GGNNCC 1 cut(s) 403
BspMI ACCTGC 1 cut(s) 466
BspT107I GGYRCC 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 123
BsrI ACTGG 2 cut(s) 313, 345
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 1 cut(s) 71
BssNI GRCGYC 1 cut(s) 675
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 3 cut(s) 244, 334, 632
BstACI GRCGYC 1 cut(s) 675
BstBAI YACGTR 1 cut(s) 151
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 611
BstFNI CGCG 4 cut(s) 111, 113, 384, 464
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 1 cut(s) 74
BstMAI GTCTC 2 cut(s) 9, 231
BstMBI GATC 1 cut(s) 71
BstMWI GCNNNNNNNGC 2 cut(s) 113, 641
BstNI CCWGG 1 cut(s) 136
BstSCI CCNGG 2 cut(s) 134, 435
BstSLI GKGCMC 1 cut(s) 109
BstUI CGCG 4 cut(s) 111, 113, 384, 464
BstV1I GCAGC 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BsuI GTATCC 3 cut(s) 532, 562, 586
BsuRI GGCC 2 cut(s) 276, 312
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 1 cut(s) 611
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 4 cut(s) 296, 320, 637, 651
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 1 cut(s) 109
CfoI GCGC 1 cut(s) 113
Csp6I GTAC 5 cut(s) 195, 289, 402, 471, 609
CviAII CATG 1 cut(s) 597
CviJI RGCY 5 cut(s) 134, 276, 312, 320, 360
CviKI_1 RGCY 5 cut(s) 134, 276, 312, 320, 360
CviQI GTAC 5 cut(s) 195, 289, 402, 471, 609
DdeI CTNAG 1 cut(s) 75
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
DrdI GACNNNNNNGTC 1 cut(s) 464
DseDI GACNNNNNNGTC 1 cut(s) 464
EaeI YGGCCR 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 9
FaeI CATG 1 cut(s) 600
FaiI YATR 8 cut(s) 59, 69, 125, 351, 357, 417, 419, 598
FaqI GGGAC 2 cut(s) 470, 568
FatI CATG 1 cut(s) 596
Fnu4HI GCNGC 3 cut(s) 114, 321, 385
FokI GGATG 1 cut(s) 618
Fsp4HI GCNGC 3 cut(s) 114, 321, 385
GlaI GCGC 1 cut(s) 112
GluI GCNGC 3 cut(s) 114, 321, 385
HaeIII GGCC 2 cut(s) 276, 312
HapII CCGG 2 cut(s) 192, 437
HhaI GCGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 675
Hin1II CATG 1 cut(s) 600
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HinfI GANTC 3 cut(s) 77, 96, 188
HpaII CCGG 2 cut(s) 192, 437
HphI GGTGA 1 cut(s) 22
Hpy188I TCNGA 4 cut(s) 76, 261, 330, 680
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 148, 175
HpyCH4III ACNGT 3 cut(s) 244, 334, 632
HpyCH4IV ACGT 5 cut(s) 18, 150, 282, 611, 675
HpyCH4V TGCA 4 cut(s) 127, 230, 558, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 641
HpyF3I CTNAG 1 cut(s) 75
HpySE526I ACGT 5 cut(s) 18, 150, 282, 611, 675
Hsp92I GRCGYC 1 cut(s) 675
Hsp92II CATG 1 cut(s) 600
HspAI GCGC 1 cut(s) 111
KpnI GGTACC 1 cut(s) 405
Kzo9I GATC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 429
Lsp1109I GCAGC 1 cut(s) 307
MaeII ACGT 5 cut(s) 18, 150, 282, 611, 675
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 2 cut(s) 109, 166
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 1 cut(s) 529
MluNI TGGCCA 1 cut(s) 312
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 4 cut(s) 46, 287, 583, 646
Mox20I TGGCCA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 312
MseI TTAA 1 cut(s) 450
Msp20I TGGCCA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 2 cut(s) 192, 437
MspR9I CCNGG 2 cut(s) 136, 437
MvaI CCWGG 1 cut(s) 136
MvnI CGCG 4 cut(s) 111, 113, 384, 464
MwoI GCNNNNNNNGC 2 cut(s) 113, 641
NciI CCSGG 1 cut(s) 437
NdeII GATC 1 cut(s) 71
NlaIII CATG 1 cut(s) 600
NlaIV GGNNCC 1 cut(s) 403
NmeAIII GCCGAG 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 2 cut(s) 96, 188
PflMI CCANNNNNTGG 1 cut(s) 302
PkrI GCNGC 3 cut(s) 115, 322, 386
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Ppu21I YACGTR 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 134
PspGI CCWGG 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 403
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 5 cut(s) 196, 290, 403, 472, 610
RsaNI GTAC 5 cut(s) 195, 289, 402, 471, 609
SaqAI TTAA 1 cut(s) 450
SatI GCNGC 3 cut(s) 114, 321, 385
Sau3AI GATC 1 cut(s) 71
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 2 cut(s) 136, 437
SduI GDGCHC 2 cut(s) 109, 166
SetI ASST 6 cut(s) 21, 153, 285, 480, 614, 678
Sse9I AATT 1 cut(s) 529
SsiI CCGC 5 cut(s) 42, 113, 369, 384, 464
StyD4I CCNGG 2 cut(s) 134, 435
TaaI ACNGT 3 cut(s) 244, 334, 632
TaiI ACGT 5 cut(s) 21, 153, 285, 614, 678
TaqI TCGA 2 cut(s) 99, 279
TasI AATT 1 cut(s) 529
TauI GCSGC 2 cut(s) 116, 387
TfiI GAWTC 2 cut(s) 96, 188
Tru1I TTAA 1 cut(s) 450
Tru9I TTAA 1 cut(s) 450
TscAI CASTG 4 cut(s) 303, 320, 637, 651
TseI GCWGC 1 cut(s) 320
TspRI CASTG 4 cut(s) 303, 320, 637, 651
Van91I CCANNNNNTGG 1 cut(s) 302
ZraI GACGTC 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.