Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001225

Physical Location & Seq

Genomic Coordinates Reverse (-)

34744378 .. 34745402

Gene Structure 1025 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCTTCCGCCACACAGTCATTTTACATTTTATGAATTTGACTCAAGTTTTAAGGAGGTGGCAAAGCAAGAGTGTACCATCCCAGATCACTTGATGATCCAGGACTGGGCTTTCACTGACACTCATTATATCTTATTTGCGAATCGCATCAAGCTTGATGTTGTCGGTGCAATGACTGCAGTCTGTGGGACTACACCGATGATAACAGCATTATCAGTAAACCCTAGCAAGGACACTTCTCCCATATACTTGCTTCCTCGCTTTCCCGATGAAGTGAATTATAATCGAGATTGGAGAGTGCCTATTGAAGCTCCCTCACAATTTTGGCTGCTACATGTATGCAATGCCTATGAGAATTTGGATGAGAATGGGAATTCGGAGATCCTAATACACGGTTCTGCTTGCTCTTACAAGTGGTTCAATTTTCAAAAGTTATTTGGTAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003824 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008300 GO:0008610 GO:0009056 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010016 GO:0010033 GO:0010223 GO:0010346 GO:0010436 GO:0010817 GO:0016042 GO:0016106 GO:0016114 GO:0016119 GO:0016121 GO:0016491 GO:0016701 GO:0016702 GO:0018130 GO:0032501 GO:0032502 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0045549 GO:0046247 GO:0046483 GO:0048367 GO:0048646 GO:0048731 GO:0048856 GO:0050896 GO:0051213 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901334 GO:1901336 GO:1901360 GO:1901362 GO:1901575 GO:1901576 GO:1901600 GO:1901601 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko00906 map00906

Pfam Domains

Protein Families

RPE65

Protein Analysis

149

Amino Acids

17.25

Weight (kDa)

5.19

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPE65	PF03055	7 - 133	1.8e-11	Retinal pigment epithelial membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44990 AT2G44990 AT2G44990
fragaria_vesca	FvH4_7g10450
malus_domestica	MD07G1110600.v1.1
prunus_persica	Prupe.2G133900_v2.0.a1
pyrus_communis	pycom07g09530
rosa_chinensis	RchiOBHm_Chr1g0342921 RchiOBHm_Chr1g0342931 RchiOBHm_Chr1g0348141 RchiOBHm_Chr1g0348171 RchiOBHm_Chr1g0348201 RchiOBHm_Chr2g0136091 RchiOBHm_Chr7g0229961
rosa_laevigata	RLG00000028678 RLG00000028682 RLG00000028684 RLG00000028685 RLG00000028686
rosa_multiflora	Rmu_co8414565.1_g000001 Rmu_co8499605.1_g000001 Rmu_sc0001563.1_g000031 Rmu_sc0001890.1_g000013 Rmu_sc0001890.1_g000015 Rmu_sc0002209.1_g000017 Rmu_sc0003991.1_g000009 Rmu_sc0004502.1_g000011 Rmu_sc0004502.1_g000018 Rmu_sc0005046.1_g000018
rosa_roxburghii	Rroxscaffold_4G00307110 Rroxscaffold_4G00307160 Rroxscaffold_4G00307170 Rroxscaffold_4G00307180
rosa_rugosa	Rorug01G0145700.1 Rorug01G0192700 Rorug01G0192900 Rorug01G0193500
rosa_samantha	Rh1AG095900 Rh1AG210700 Rh1AG210800 Rh1BG176200 Rh1BG176800 Rh1BG177100 Rh1BG177200 Rh1CG195000 Rh1CG195100 Rh1DG205900 Rh1DG206300 Rh1DG206600 Rh1DG206700 Rh3DG305500
rosa_wichuraiana	Rw0G011410 Rw1G017570 Rw1G017580 Rw1G017590 Rw1G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	2 cut(s)	91, 376
AcsI	RAATTY	3 cut(s)	35, 355, 373
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	2 cut(s)	106, 229
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	3 cut(s)	308, 421, 428
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	2 cut(s)	154, 311
AluI	AGCT	2 cut(s)	154, 311
AlwI	GGATC	2 cut(s)	91, 376
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	3 cut(s)	35, 355, 373
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	101
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	177
BisI	GCNGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	330
Bme1390I	CCNGG	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	101
BmrI	ACTGGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	156
BmuI	ACTGGG	1 cut(s)	115
BoxI	GACNNNNGTC	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 229
Bse1I	ACTGG	1 cut(s)	110
Bse3DI	GCAATG	2 cut(s)	177, 349
BseBI	CCWGG	1 cut(s)	101
BseGI	GGATG	2 cut(s)	78, 367
BseLI	CCNNNNNNNGG	2 cut(s)	106, 229
BseMI	GCAATG	2 cut(s)	177, 349
BseNI	ACTGG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	315
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	2 cut(s)	106, 229
BsmFI	GGGAC	1 cut(s)	202
Bsp143I	GATC	3 cut(s)	85, 96, 381
BspACI	CCGC	1 cut(s)	8
BspMAI	CTGCAG	1 cut(s)	181
BspPI	GGATC	2 cut(s)	91, 376
BsrDI	GCAATG	2 cut(s)	177, 349
BsrI	ACTGG	1 cut(s)	110
BssMI	GATC	3 cut(s)	85, 96, 381
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	2 cut(s)	17, 395
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	403
BstF5I	GGATG	2 cut(s)	78, 367
BstKTI	GATC	3 cut(s)	88, 99, 384
BstMBI	GATC	3 cut(s)	85, 96, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	338
BstPAI	GACNNNNGTC	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	315
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	78, 367
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	403
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	1 cut(s)	335
CviJI	RGCY	4 cut(s)	110, 154, 311, 328
CviKI_1	RGCY	4 cut(s)	110, 154, 311, 328
CviQI	GTAC	1 cut(s)	75
DpnI	GATC	3 cut(s)	87, 98, 383
DpnII	GATC	3 cut(s)	85, 96, 381
EcoRI	GAATTC	1 cut(s)	373
EcoRII	CCWGG	1 cut(s)	99
FaeI	CATG	1 cut(s)	338
FaiI	YATR	8 cut(s)	33, 129, 245, 247, 282, 336, 340, 351
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	329
FokI	GGATG	2 cut(s)	65, 374
Fsp4HI	GCNGC	1 cut(s)	329
FspBI	CTAG	1 cut(s)	225
GluI	GCNGC	1 cut(s)	329
Hin1II	CATG	1 cut(s)	338
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	2 cut(s)	41, 142
Hpy166II	GTNNAC	2 cut(s)	75, 220
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	2 cut(s)	266, 287
Hpy8I	GTNNAC	2 cut(s)	75, 220
HpyCH4III	ACNGT	2 cut(s)	17, 395
HpyCH4V	TGCA	3 cut(s)	170, 179, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	338
Kzo9I	GATC	3 cut(s)	85, 96, 381
LmnI	GCTCC	1 cut(s)	316
LpnPI	CCDG	4 cut(s)	86, 91, 96, 113
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	1 cut(s)	225
MalI	GATC	3 cut(s)	87, 98, 383
MboI	GATC	3 cut(s)	85, 96, 381
MflI	RGATCY	1 cut(s)	381
MluCI	AATT	7 cut(s)	35, 277, 320, 355, 373, 421, 442
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	3 cut(s)	49, 267, 325
MseI	TTAA	2 cut(s)	51, 448
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	3 cut(s)	85, 96, 381
NlaIII	CATG	1 cut(s)	338
NspI	RCATGY	1 cut(s)	338
PciI	ACATGT	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	142
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	330
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PscI	ACATGT	1 cut(s)	334
PshAI	GACNNNNGTC	1 cut(s)	179
PsiI	TTATAA	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	381
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SaqAI	TTAA	2 cut(s)	51, 448
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	3 cut(s)	85, 96, 381
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	101
SetI	ASST	3 cut(s)	60, 156, 313
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	7 cut(s)	35, 277, 320, 355, 373, 421, 442
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	17, 395
TaqI	TCGA	1 cut(s)	286
TasI	AATT	7 cut(s)	35, 277, 320, 355, 373, 421, 442
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	51, 448
Tru9I	TTAA	2 cut(s)	51, 448
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	48, 285
TspRI	CASTG	1 cut(s)	121
XapI	RAATTY	3 cut(s)	35, 355, 373
XceI	RCATGY	1 cut(s)	338
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.