Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001310

Physical Location & Seq

Genomic Coordinates Reverse (-)

53670592 .. 53672331

Gene Structure 1740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1740 bp

ATGTCCTTTCGCTTTGGCATCAGCACTTTGTTCATGAAGAGGGAGATTGACTGCCCTTGTCTCACGCCAGAAGCTGTCTTGAAGGCATCTGGCCATGTAGATAAGTTCACTGATCTCATGGTTAAGGATGAGAAGAAAGGGACTTGCTACCGGGCAGATCACTTGCTCAAGGATTTCTGCAATGAGAAGCTTGAAGATCAGGACCGTCGCATTAGTCCAGAGATGGCAATGGAGCTGAAACAAGTGCTTTCTAAATTGGATGGTCTATCAGCTGAAGAGCTGGGTGCATGCATCAAGAAATATGGGATTAGAGCCCCCGAAACAGATAATTATCTCTCAGATCCTTTTCCTTTCAACTTGATGTTTCAAACAACAATTGGTCCGTCTGGTTCGAGCATTGGTTTCTTTCGCCCAGAAACTGCACAAGGCATATTTGTGAATTTTATGGACATTTACTATGACAATGGGTGCAAGCTGCCTTTTGCCGTTGCTCAAGTTGGCCAGGCTTTTCGAAACGAGATATCTCCTCGCCAAGGCCTGTTGAGAGTCCGTGAGTTCACACTCGCGGAGATTGAGCACTTTGTTGATCCTGAAGACAAATCCCACGTGAAATTCCCCACCGTTGACAAGTTGCAACTTCCTATGTTCCCAAGGGATGAACAAAAGCCCGGCCAATCTGCAAGATTAATCTCTCTGGGTGAAGCAGTGCATTGTAAGATTGTGGAGAATGAAACTCTTGGCTACTTCATTGGGAGAGTATATCTCTTCCTCACTCGTCTGGGTATAGACAAGAACCGTATAAGGTTCAGGCAACACCTTGCTAAAGAGATGGCTCACTATGCTGCTGACTGCTGGGATGCTGAGATTGAGACTTCTTATGGCTGGATTGAGTGCGTCGGTATTGCAGATAGATCTGCATATGACTTGAAGGCTCATTCGGGGAAAAGTCGTCTTGAGGCACATGAACAACTTTCAGAACCAAGACAAGTGGAGAAATTGGTTATATCTCCGGTAAAGAAAGAGATTGGCCCTGCTTTCGAGAAGAAGCAAAAGAATGTGCTTGAAGCTTTGGAGGCTATGGATGAAGAAGAAATTTCAAAAATGAAGGCCGAGTTAGACTCCAAGGGGGAGGTGGACTTCTTTGTCTGCACTCTTGGGGAACATGTATCTATTAAGAGCAGTATGGTGACTATTTCAAAGGTTAAAACAAGAGAACATCAAAGAAAATTCACACCCTCAGTAATCGAGCCTTCATTTGGTATTGGGAGGATTATATATTGTCTCTTTGAGCATTCCTTCTACACCAGACCAGATAAAACTGGGGATGAACAATTGAATGTGTTTCGGTTTAACCCACTTGTGGCGCCTTTTAAGTGCACAGTTTTCCCTCTGATTCGGAACCAACGGTTTGAGGATGTTGCTAAGGACATTTCCAAGTCATTGACTGCTGCTGGCATATCGCATAAAATAGATACTACAGGTACCTCGATTGGGAAACGTTACGCACGTACTGATGAGCTCGGTGTACCCTTTGCAATCACGGTTGATTCTACATCCTCGGTCACAATTCGAGAAAGAGACAGCAAAGATCAAATCCGTGTTAGTGTGAAGAAGGCAGTATCTGTTGTGAAGGAGCTCAGTGAGGGGTTGAGGACTTGGGAAGATGTGTGGTGGTCACCTAGTCAACGGTGGAAGAGATTCTGGCGTTCCTGCTTCAGATTTATATTGTCTAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

579

Amino Acids

66.18

Weight (kDa)

7.86

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	137 - 199	2.8e-07	tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon	PF03129	458 - 546	1.2e-19	Anticodon binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29880
fragaria_vesca	FvH4_4g22441 FvH4_4g22450 FvH4_4g22450 FvH4_4g22610 FvH4_4g22610
malus_domestica	MD13G1131000.v1.1 MD13G1145800.v1.1 MD16G1141200.v1.1
prunus_persica	Prupe.1G214600_v2.0.a1
pyrus_communis	pycom13g11430 pycom13g12530 pycom16g11160 pycom16g11170
rosa_chinensis	RchiOBHm_Chr1g0361881 RchiOBHm_Chr4g0428711 RchiOBHm_Chr4g0428851
rosa_laevigata	RLG00000007120 RLG00000007133 RLG00000027689 RLG00000027690 RLG00000027694
rosa_multiflora	Rmu_co8208336.1_g000001 Rmu_co8210234.1_g000001 Rmu_sc0003316.1_g000006 Rmu_sc0008612.1_g000003 Rmu_sc0018216.1_g000001 Rmu_ssc0000124.1_g000013
rosa_roxburghii	Rroxscaffold_4G00294630 Rroxscaffold_5G00370530
rosa_rugosa	Rorug01G0292100 Rorug04G0227400 Rorug04G0227500 Rorug04G0229700
rosa_samantha	Rh1AG302800 Rh1BG265900 Rh1BG266000 Rh1CG284000 Rh1DG295900 Rh1DG296000 Rh4AG284700 Rh4AG284900 Rh4AG286400 Rh4BG290700 Rh4BG290900 Rh4BG292200 Rh4CG308200 Rh4DG288200 Rh4DG289400
rosa_wichuraiana	Rw0G020620 Rw1G026830 Rw4G024720 Rw4G024830 Rw7G040280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1142
Acc65I	GGTACC	1 cut(s)	1481
AccB1I	GGYRCC	2 cut(s)	1363, 1481
AccII	CGCG	1 cut(s)	566
AciI	CCGC	1 cut(s)	566
AclI	AACGTT	1 cut(s)	1498
AclWI	GGATC	2 cut(s)	335, 581
AcoI	YGGCCR	3 cut(s)	91, 499, 670
AcsI	RAATTY	4 cut(s)	439, 611, 1092, 1226
AcuI	CTGAAG	3 cut(s)	294, 612, 1699
AcvI	CACGTG	1 cut(s)	607
AcyI	GRCGYC	1 cut(s)	1364
AfaI	GTAC	3 cut(s)	1483, 1510, 1527
AfiI	CCNNNNNNNGG	4 cut(s)	533, 1256, 1360, 1491
AflIII	ACRYGT	1 cut(s)	1162
AgsI	TTSAA	9 cut(s)	82, 194, 355, 368, 928, 1064, 1098, 1197, 1336
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	9 cut(s)	74, 190, 235, 272, 280, 475, 1067, 1519, 1636
AluI	AGCT	9 cut(s)	74, 190, 235, 272, 280, 475, 1067, 1519, 1636
Alw21I	GWGCWC	4 cut(s)	579, 1379, 1521, 1638
Alw26I	GTCTC	4 cut(s)	65, 863, 1286, 1572
Alw44I	GTGCAC	1 cut(s)	1375
AlwI	GGATC	2 cut(s)	335, 581
AlwNI	CAGNNNCTG	3 cut(s)	74, 419, 1622
AoxI	GGCC	6 cut(s)	91, 499, 535, 670, 1027, 1107
ApaLI	GTGCAC	1 cut(s)	1375
ApeKI	GCWGC	3 cut(s)	475, 842, 1448
ApoI	RAATTY	4 cut(s)	439, 611, 1092, 1226
AseI	ATTAAT	1 cut(s)	686
Asp700I	GAANNNNTTC	1 cut(s)	1697
Asp718I	GGTACC	1 cut(s)	1481
AspLEI	GCGC	1 cut(s)	1366
AspS9I	GGNCC	3 cut(s)	202, 380, 1028
AsuC2I	CCSGG	2 cut(s)	152, 669
AsuHPI	GGTGA	3 cut(s)	710, 1198, 1668
AsuII	TTCGAA	1 cut(s)	511
AvaII	GGWCC	2 cut(s)	202, 380
BaeGI	GKGCMC	1 cut(s)	1379
BalI	TGGCCA	2 cut(s)	93, 501
BanI	GGYRCC	2 cut(s)	1363, 1481
BanII	GRGCYC	3 cut(s)	316, 1521, 1638
BbrPI	CACGTG	1 cut(s)	607
BbsI	GAAGAC	1 cut(s)	600
Bbv12I	GWGCWC	4 cut(s)	579, 1379, 1521, 1638
BbvI	GCAGC	3 cut(s)	462, 829, 1435
BccI	CCATC	3 cut(s)	217, 254, 823
BceAI	ACGGC	1 cut(s)	470
BciT130I	CCWGG	1 cut(s)	503
BcnI	CCSGG	2 cut(s)	152, 669
BcoDI	GTCTC	4 cut(s)	65, 863, 1286, 1572
BfaI	CTAG	2 cut(s)	1680, 1731
BfmI	CTRYAG	1 cut(s)	1476
BfoI	RGCGCY	1 cut(s)	1367
BglII	AGATCT	1 cut(s)	911
BisI	GCNGC	3 cut(s)	476, 843, 1449
BlsI	GCNGC	3 cut(s)	477, 844, 1450
Bme1390I	CCNGG	3 cut(s)	152, 503, 669
Bme18I	GGWCC	2 cut(s)	202, 380
BmgT120I	GGNCC	3 cut(s)	202, 380, 1028
BmiI	GGNNCC	3 cut(s)	1365, 1400, 1483
BmrFI	CCNGG	3 cut(s)	152, 503, 669
BmrI	ACTGGG	1 cut(s)	1329
BmsI	GCATC	4 cut(s)	27, 95, 300, 847
BmuI	ACTGGG	1 cut(s)	1329
BpiI	GAAGAC	1 cut(s)	600
BplI	GAGNNNNNCTC	4 cut(s)	747, 779, 1103, 1135
Bpu10I	CCTNAGC	1 cut(s)	1422
Bpu14I	TTCGAA	1 cut(s)	511
BpuEI	CTTGAG	3 cut(s)	152, 477, 974
BpuMI	CCSGG	2 cut(s)	152, 669
BsaAI	YACGTR	2 cut(s)	607, 1508
BsaBI	GATNNNNATC	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	1364
BsaJI	CCNNGG	4 cut(s)	532, 650, 1122, 1557
BsaWI	WCCGGW	1 cut(s)	1009
Bsc4I	CCNNNNNNNGG	4 cut(s)	533, 1256, 1360, 1491
Bse1I	ACTGG	1 cut(s)	1324
Bse3DI	GCAATG	2 cut(s)	187, 234
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	4 cut(s)	532, 650, 1122, 1557
BseGI	GGATG	8 cut(s)	133, 265, 661, 862, 1087, 1330, 1420, 1553
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	4 cut(s)	533, 1256, 1360, 1491
BseMI	GCAATG	2 cut(s)	187, 234
BseMII	CTCAG	4 cut(s)	351, 852, 1251, 1651
BseNI	ACTGG	1 cut(s)	1324
BseRI	GAGGAG	1 cut(s)	516
BseSI	GKGCMC	1 cut(s)	1379
BseXI	GCAGC	3 cut(s)	462, 829, 1435
BseYI	CCCAGC	2 cut(s)	280, 852
BsgI	GTGCAG	2 cut(s)	405, 1132
Bsh1236I	CGCG	1 cut(s)	566
BshFI	GGCC	6 cut(s)	93, 501, 537, 672, 1029, 1109
BshNI	GGYRCC	2 cut(s)	1363, 1481
BsiHKAI	GWGCWC	4 cut(s)	579, 1379, 1521, 1638
BsiSI	CCGG	3 cut(s)	151, 669, 1010
BslFI	GGGAC	1 cut(s)	154
BslI	CCNNNNNNNGG	4 cut(s)	533, 1256, 1360, 1491
BsmAI	GTCTC	4 cut(s)	65, 863, 1286, 1572
BsmFI	GGGAC	1 cut(s)	154
BsmI	GAATGC	1 cut(s)	1291
BsnI	GGCC	6 cut(s)	93, 501, 537, 672, 1029, 1109
Bsp119I	TTCGAA	1 cut(s)	511
Bsp1286I	GDGCHC	5 cut(s)	316, 579, 1379, 1521, 1638
Bsp143I	GATC	7 cut(s)	112, 157, 196, 340, 586, 911, 1588
BspACI	CCGC	1 cut(s)	566
BspANI	GGCC	6 cut(s)	93, 501, 537, 672, 1029, 1109
BspCNI	CTCAG	4 cut(s)	350, 853, 1250, 1650
BspFNI	CGCG	1 cut(s)	566
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	3 cut(s)	1365, 1400, 1483
BspPI	GGATC	2 cut(s)	335, 581
BspQI	GCTCTTC	1 cut(s)	270
BspT104I	TTCGAA	1 cut(s)	511
BspT107I	GGYRCC	2 cut(s)	1363, 1481
BsrDI	GCAATG	2 cut(s)	187, 234
BsrI	ACTGG	1 cut(s)	1324
BssECI	CCNNGG	4 cut(s)	532, 650, 1122, 1557
BssMI	GATC	7 cut(s)	112, 157, 196, 340, 586, 911, 1588
BssNI	GRCGYC	1 cut(s)	1364
BssT1I	CCWWGG	3 cut(s)	532, 650, 1122
Bst2UI	CCWGG	1 cut(s)	503
Bst4CI	ACNGT	7 cut(s)	206, 622, 797, 1381, 1407, 1543, 1689
Bst6I	CTCTTC	4 cut(s)	32, 270, 770, 1688
BstACI	GRCGYC	1 cut(s)	1364
BstBAI	YACGTR	2 cut(s)	607, 1508
BstBI	TTCGAA	1 cut(s)	511
BstC8I	GCNNGC	3 cut(s)	289, 473, 1453
BstDEI	CTNAG	5 cut(s)	337, 861, 1237, 1422, 1637
BstEII	GGTNACC	1 cut(s)	1674
BstENI	CCTNNNNNAGG	1 cut(s)	531
BstF5I	GGATG	8 cut(s)	133, 265, 661, 862, 1087, 1330, 1420, 1553
BstFNI	CGCG	1 cut(s)	566
BstH2I	RGCGCY	1 cut(s)	1367
BstHHI	GCGC	1 cut(s)	1366
BstKTI	GATC	7 cut(s)	115, 160, 199, 343, 589, 914, 1591
BstMAI	GTCTC	4 cut(s)	65, 863, 1286, 1572
BstMBI	GATC	7 cut(s)	112, 157, 196, 340, 586, 911, 1588
BstMWI	GCNNNNNNNGC	2 cut(s)	839, 1073
BstNI	CCWGG	1 cut(s)	503
BstNSI	RCATGY	2 cut(s)	291, 1166
BstPI	GGTNACC	1 cut(s)	1674
BstSCI	CCNGG	3 cut(s)	150, 501, 667
BstSFI	CTRYAG	1 cut(s)	1476
BstSLI	GKGCMC	1 cut(s)	1379
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	3 cut(s)	462, 829, 1435
BstV2I	GAAGAC	1 cut(s)	600
BstX2I	RGATCY	2 cut(s)	340, 911
BstYI	RGATCY	2 cut(s)	340, 911
BsuRI	GGCC	6 cut(s)	93, 501, 537, 672, 1029, 1109
BtsCI	GGATG	8 cut(s)	133, 265, 661, 862, 1087, 1330, 1420, 1553
BtsI	GCAGTG	1 cut(s)	711
BtsIMutI	CAGTG	3 cut(s)	108, 711, 1645
Cac8I	GCNNGC	3 cut(s)	289, 473, 1453
CaiI	CAGNNNCTG	3 cut(s)	74, 419, 1622
CciI	TCATGA	1 cut(s)	33
CfoI	GCGC	1 cut(s)	1366
Cfr13I	GGNCC	3 cut(s)	202, 380, 1028
CseI	GACGC	1 cut(s)	883
Csp6I	GTAC	3 cut(s)	1482, 1509, 1526
CspCI	CAANNNNNGTGG	2 cut(s)	969, 1004
CviAII	CATG	6 cut(s)	34, 95, 118, 288, 962, 1163
CviQI	GTAC	3 cut(s)	1482, 1509, 1526
DdeI	CTNAG	5 cut(s)	337, 861, 1237, 1422, 1637
DinI	GGCGCC	1 cut(s)	1365
DpnI	GATC	7 cut(s)	114, 159, 198, 342, 588, 913, 1590
DpnII	GATC	7 cut(s)	112, 157, 196, 340, 586, 911, 1588
DrdI	GACNNNNNNGTC	1 cut(s)	1142
DseDI	GACNNNNNNGTC	1 cut(s)	1142
EaeI	YGGCCR	3 cut(s)	91, 499, 670
Eam1104I	CTCTTC	4 cut(s)	32, 270, 770, 1688
EarI	CTCTTC	4 cut(s)	32, 270, 770, 1688
Ecl136II	GAGCTC	2 cut(s)	1519, 1636
Eco130I	CCWWGG	3 cut(s)	532, 650, 1122
Eco147I	AGGCCT	1 cut(s)	537
Eco24I	GRGCYC	3 cut(s)	316, 1521, 1638
Eco32I	GATATC	1 cut(s)	522
Eco47I	GGWCC	2 cut(s)	202, 380
Eco53kI	GAGCTC	2 cut(s)	1519, 1636
Eco57I	CTGAAG	3 cut(s)	294, 612, 1699
Eco72I	CACGTG	1 cut(s)	607
Eco91I	GGTNACC	1 cut(s)	1674
EcoICRI	GAGCTC	2 cut(s)	1519, 1636
EcoNI	CCTNNNNNAGG	1 cut(s)	531
EcoO65I	GGTNACC	1 cut(s)	1674
EcoRII	CCWGG	1 cut(s)	501
EcoRV	GATATC	1 cut(s)	522
EcoT14I	CCWWGG	3 cut(s)	532, 650, 1122
EcoT22I	ATGCAT	1 cut(s)	293
EcoT38I	GRGCYC	3 cut(s)	316, 1521, 1638
EgeI	GGCGCC	1 cut(s)	1365
EheI	GGCGCC	1 cut(s)	1365
ErhI	CCWWGG	3 cut(s)	532, 650, 1122
FaeI	CATG	6 cut(s)	37, 98, 121, 291, 965, 1166
FaqI	GGGAC	1 cut(s)	154
FatI	CATG	6 cut(s)	33, 94, 117, 287, 961, 1162
FauNDI	CATATG	1 cut(s)	919
Fnu4HI	GCNGC	3 cut(s)	476, 843, 1449
FokI	GGATG	8 cut(s)	140, 272, 668, 869, 1094, 1337, 1427, 1540
FriOI	GRGCYC	3 cut(s)	316, 1521, 1638
Fsp4HI	GCNGC	3 cut(s)	476, 843, 1449
FspBI	CTAG	2 cut(s)	1680, 1731
GlaI	GCGC	1 cut(s)	1365
GluI	GCNGC	3 cut(s)	476, 843, 1449
GsaI	CCCAGC	2 cut(s)	284, 856
HaeII	RGCGCY	1 cut(s)	1367
HaeIII	GGCC	6 cut(s)	93, 501, 537, 672, 1029, 1109
HapII	CCGG	3 cut(s)	151, 669, 1010
HgaI	GACGC	1 cut(s)	883
HhaI	GCGC	1 cut(s)	1366
Hin1I	GRCGYC	1 cut(s)	1364
Hin1II	CATG	6 cut(s)	37, 98, 121, 291, 965, 1166
Hin6I	GCGC	1 cut(s)	1364
HinP1I	GCGC	1 cut(s)	1364
HincII	GTYRAC	2 cut(s)	625, 1685
HindII	GTYRAC	2 cut(s)	625, 1685
HindIII	AAGCTT	2 cut(s)	188, 1065
HinfI	GANTC	5 cut(s)	546, 1118, 1393, 1547, 1698
HpaII	CCGG	3 cut(s)	151, 669, 1010
HphI	GGTGA	3 cut(s)	710, 1198, 1668
Hpy166II	GTNNAC	7 cut(s)	108, 558, 625, 1135, 1377, 1526, 1685
Hpy188I	TCNGA	5 cut(s)	340, 976, 1392, 1398, 1718
Hpy8I	GTNNAC	7 cut(s)	108, 558, 625, 1135, 1377, 1526, 1685
Hpy99I	CGWCG	2 cut(s)	210, 899
HpyAV	CCTTC	7 cut(s)	76, 922, 1099, 1260, 1306, 1606, 1624
HpyCH4III	ACNGT	7 cut(s)	206, 622, 797, 1381, 1407, 1543, 1689
HpyCH4IV	ACGT	3 cut(s)	606, 1498, 1507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	839, 1073
HpyF3I	CTNAG	5 cut(s)	337, 861, 1237, 1422, 1637
HpySE526I	ACGT	3 cut(s)	606, 1498, 1507
Hsp92I	GRCGYC	1 cut(s)	1364
Hsp92II	CATG	6 cut(s)	37, 98, 121, 291, 965, 1166
HspAI	GCGC	1 cut(s)	1364
KasI	GGCGCC	1 cut(s)	1363
KpnI	GGTACC	1 cut(s)	1485
Kzo9I	GATC	7 cut(s)	112, 157, 196, 340, 586, 911, 1588
LguI	GCTCTTC	1 cut(s)	270
LmnI	GCTCC	2 cut(s)	232, 1633
Lsp1109I	GCAGC	3 cut(s)	462, 829, 1435
LweI	GCATC	4 cut(s)	27, 95, 300, 847
MaeI	CTAG	2 cut(s)	1680, 1731
MaeII	ACGT	3 cut(s)	606, 1498, 1507
MaeIII	GTNAC	4 cut(s)	1186, 1499, 1561, 1674
MalI	GATC	7 cut(s)	114, 159, 198, 342, 588, 913, 1590
MboI	GATC	7 cut(s)	112, 157, 196, 340, 586, 911, 1588
MfeI	CAATTG	2 cut(s)	375, 1331
MflI	RGATCY	2 cut(s)	340, 911
MhlI	GDGCHC	5 cut(s)	316, 579, 1379, 1521, 1638
MlsI	TGGCCA	2 cut(s)	93, 501
MluNI	TGGCCA	2 cut(s)	93, 501
Mly113I	GGCGCC	1 cut(s)	1364
MlyI	GAGTC	2 cut(s)	555, 1112
Mox20I	TGGCCA	2 cut(s)	93, 501
Mph1103I	ATGCAT	1 cut(s)	293
MroXI	GAANNNNTTC	1 cut(s)	1697
MscI	TGGCCA	2 cut(s)	93, 501
MseI	TTAA	6 cut(s)	123, 686, 1173, 1203, 1350, 1371
MslI	CAYNNNNRTG	1 cut(s)	434
Msp20I	TGGCCA	2 cut(s)	93, 501
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	3 cut(s)	151, 669, 1010
MspR9I	CCNGG	3 cut(s)	152, 503, 669
MunI	CAATTG	2 cut(s)	375, 1331
Mva1269I	GAATGC	1 cut(s)	1291
MvaI	CCWGG	1 cut(s)	503
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	2 cut(s)	839, 1073
NarI	GGCGCC	1 cut(s)	1364
NciI	CCSGG	2 cut(s)	152, 669
NdeI	CATATG	1 cut(s)	919
NdeII	GATC	7 cut(s)	112, 157, 196, 340, 586, 911, 1588
NlaIII	CATG	6 cut(s)	37, 98, 121, 291, 965, 1166
NlaIV	GGNNCC	3 cut(s)	1365, 1400, 1483
NmeAIII	GCCGAG	1 cut(s)	1135
NmuCI	GTSAC	3 cut(s)	1186, 1561, 1674
NsiI	ATGCAT	1 cut(s)	293
NspI	RCATGY	2 cut(s)	291, 1166
NspV	TTCGAA	1 cut(s)	511
PaeI	GCATGC	1 cut(s)	291
PagI	TCATGA	1 cut(s)	33
PceI	AGGCCT	1 cut(s)	537
PciI	ACATGT	1 cut(s)	1162
PciSI	GCTCTTC	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	1504
PctI	GAATGC	1 cut(s)	1291
PdmI	GAANNNNTTC	1 cut(s)	1697
PfeI	GAWTC	3 cut(s)	1393, 1547, 1698
PkrI	GCNGC	3 cut(s)	477, 844, 1450
PleI	GAGTC	2 cut(s)	554, 1112
PluTI	GGCGCC	1 cut(s)	1367
PmaCI	CACGTG	1 cut(s)	607
PmlI	CACGTG	1 cut(s)	607
PpsI	GAGTC	2 cut(s)	554, 1112
Ppu21I	YACGTR	2 cut(s)	607, 1508
PscI	ACATGT	1 cut(s)	1162
PshBI	ATTAAT	1 cut(s)	686
Psp124BI	GAGCTC	2 cut(s)	1521, 1638
Psp1406I	AACGTT	1 cut(s)	1498
Psp6I	CCWGG	1 cut(s)	501
PspCI	CACGTG	1 cut(s)	607
PspEI	GGTNACC	1 cut(s)	1674
PspFI	CCCAGC	2 cut(s)	280, 852
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	3 cut(s)	1365, 1400, 1483
PspPI	GGNCC	3 cut(s)	202, 380, 1028
PstNI	CAGNNNCTG	3 cut(s)	74, 419, 1622
PsuI	RGATCY	2 cut(s)	340, 911
PvuII	CAGCTG	1 cut(s)	272
RsaI	GTAC	3 cut(s)	1483, 1510, 1527
RsaNI	GTAC	3 cut(s)	1482, 1509, 1526
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	2 cut(s)	1521, 1638
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	6 cut(s)	123, 686, 1173, 1203, 1350, 1371
SatI	GCNGC	3 cut(s)	476, 843, 1449
Sau3AI	GATC	7 cut(s)	112, 157, 196, 340, 586, 911, 1588
Sau96I	GGNCC	3 cut(s)	202, 380, 1028
SchI	GAGTC	2 cut(s)	555, 1112
ScrFI	CCNGG	3 cut(s)	152, 503, 669
SduI	GDGCHC	5 cut(s)	316, 579, 1379, 1521, 1638
SfaNI	GCATC	4 cut(s)	27, 95, 300, 847
SfcI	CTRYAG	1 cut(s)	1476
SfoI	GGCGCC	1 cut(s)	1365
SfuI	TTCGAA	1 cut(s)	511
SinI	GGWCC	2 cut(s)	202, 380
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	3 cut(s)	167, 492, 953
SmoI	CTYRAG	3 cut(s)	167, 492, 953
SphI	GCATGC	1 cut(s)	291
SseBI	AGGCCT	1 cut(s)	537
SsiI	CCGC	1 cut(s)	566
SspDI	GGCGCC	1 cut(s)	1363
SspMI	CTAG	2 cut(s)	1680, 1731
SstI	GAGCTC	2 cut(s)	1521, 1638
StuI	AGGCCT	1 cut(s)	537
StyD4I	CCNGG	3 cut(s)	150, 501, 667
StyI	CCWWGG	3 cut(s)	532, 650, 1122
TaaI	ACNGT	7 cut(s)	206, 622, 797, 1381, 1407, 1543, 1689
TaiI	ACGT	3 cut(s)	609, 1501, 1510
TaqI	TCGA	6 cut(s)	392, 511, 1038, 1245, 1487, 1570
TaqII	GACCGA	1 cut(s)	1549
TfiI	GAWTC	3 cut(s)	1393, 1547, 1698
Tru1I	TTAA	6 cut(s)	123, 686, 1173, 1203, 1350, 1371
Tru9I	TTAA	6 cut(s)	123, 686, 1173, 1203, 1350, 1371
TscAI	CASTG	3 cut(s)	115, 711, 1645
TseFI	GTSAC	3 cut(s)	1186, 1561, 1674
TseI	GCWGC	3 cut(s)	475, 842, 1448
Tsp45I	GTSAC	3 cut(s)	1186, 1561, 1674
TspGWI	ACGGA	3 cut(s)	372, 539, 1586
TspRI	CASTG	3 cut(s)	115, 711, 1645
VneI	GTGCAC	1 cut(s)	1375
VpaK11BI	GGWCC	2 cut(s)	202, 380
VspI	ATTAAT	1 cut(s)	686
XagI	CCTNNNNNAGG	1 cut(s)	531
XapI	RAATTY	4 cut(s)	439, 611, 1092, 1226
XbaI	TCTAGA	1 cut(s)	1730
XceI	RCATGY	2 cut(s)	291, 1166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1129
XmnI	GAANNNNTTC	1 cut(s)	1697
XspI	CTAG	2 cut(s)	1680, 1731
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.