RchiOBHm_Chr3g0482781

Belongs to the universal ribosomal protein uS5 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
28866314 .. 28866745
432 bp
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UTR
Exon/CDS
Intron
PRQ44760

Sequence Viewer

Length: 135 bp
ATGTCAGTTGTTGGTTCAAGGAGTCCTCATAATACAGTGAAGGTTGTTTTCAAAGCCCTTAATGTGATTGAAACTTCCAAGGATGTTCAAGAAAATTTTGGGCGCACTGTTGTTGAGAAGTACCTTCTATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

44

Amino Acids

4.91

Weight (kDa)

9.4

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 94
AfaI GTAC 1 cut(s) 122
AgsI TTSAA 4 cut(s) 18, 52, 71, 89
ApoI RAATTY 1 cut(s) 94
AspLEI GCGC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 37, 109
BstF5I GGATG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 105
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 2 cut(s) 42, 105
CfoI GCGC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 121
CviJI RGCY 1 cut(s) 56
CviKI_1 RGCY 1 cut(s) 56
CviQI GTAC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaiI YATR 2 cut(s) 30, 133
FokI GGATG 1 cut(s) 95
FspEI CC 9 cut(s) 4, 26, 39, 65, 70, 71, 84, 85, 91
GlaI GCGC 1 cut(s) 104
HhaI GCGC 1 cut(s) 105
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 1 cut(s) 22
Hpy188III TCNNGA 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 34, 134
HpyCH4III ACNGT 2 cut(s) 37, 109
HspAI GCGC 1 cut(s) 103
MluCI AATT 1 cut(s) 94
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 1 cut(s) 36
MseI TTAA 1 cut(s) 60
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 60
SchI GAGTC 1 cut(s) 31
SetI ASST 2 cut(s) 45, 126
SgeI CNNG 3 cut(s) 30, 91, 101
Sse9I AATT 1 cut(s) 94
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 37, 109
TasI AATT 1 cut(s) 94
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 2 cut(s) 42, 112
TspRI CASTG 2 cut(s) 42, 112
XapI RAATTY 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.