Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8197734.1

Orthogroup ID

OG0001359

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 456

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8197734.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 340 bp

cggtgctggcacgcctacgcaaccactcgcccaaaagagactgtttgcacaccagctggttttggagccaaacaccttctacaccagaccagataaaactggggatgaacaattgaatgtgttttgctttaacccacttgtggcaccttttaagtgcatggttttccctctgattcggaaccaacaatttgaggctgttgctaaggacatttccaagtcattgactgctgctgtcatatcgcataaaatggatactacaggtacctcgattgggaaacgttatgcacgtactgatgagctcggtgtaccctttgcgataatggttgattctacatcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009165 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0012505 GO:0015959 GO:0015960 GO:0015965 GO:0015966 GO:0016070 GO:0016874 GO:0016875 GO:0018130 GO:0019438 GO:0019538 GO:0019637 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032543 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046983 GO:0050896 GO:0055086 GO:0070127 GO:0070150 GO:0071704 GO:0090304 GO:0090407 GO:0097708 GO:0098791 GO:0140053 GO:0140098 GO:0140101 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon WHEP-TRS tRNA-synt_2b

Protein Analysis

112

Amino Acids

12.35

Weight (kDa)

8.68

Isoelectric Point (pI)

34.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64880
fragaria_vesca	FvH4_7g34290
malus_domestica	MD06G1015700.v1.1 MD07G1311200.v1.1 MD14G1141700.v1.1
prunus_persica	Prupe.2G329900_v2.0.a1 Prupe.2G329900_v2.0.a1
pyrus_communis	pycom07g28350
rosa_chinensis	RchiOBHm_Chr1g0384661 RchiOBHm_Chr3g0482781 RchiOBHm_Chr3g0482791 RchiOBHm_Chr3g0482801 RchiOBHm_Chr4g0404671
rosa_laevigata	RLG00000023329 RLG00000023333 RLG00000026022
rosa_multiflora	Rmu_co8059324.1_g000001 Rmu_co8197734.1_g000001 Rmu_co8237749.1_g000001 Rmu_co8374597.1_g000001 Rmu_sc0014854.1_g000001 Rmu_sc0026287.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113600 Rroxscaffold_2G00131740 Rroxscaffold_3G00246900 Rroxscaffold_3G00264250 Rroxscaffold_4G00276480 Rroxscaffold_4G00310280 Rroxscaffold_5G00348850 Rroxscaffold_5G00354050 Rroxscaffold_6G00398930 Rroxscaffold_6G00398960 Rroxscaffold_7G00210840
rosa_rugosa	Rorug01G0450500 Rorug01G0450600 Rorug03G0198300 Rorug03G0198400 Rorug04G0048600
rosa_samantha	Rh1AG475100 Rh1BG433300 Rh1CG446500 Rh1CG446700 Rh1DG465800 Rh3AG249900 Rh3BG285100 Rh3BG285500 Rh3CG282800 Rh3CG283100 Rh3DG278600 Rh3DG278900 Rh4BG118500
rosa_wichuraiana	Rw1G039750 Rw3G022540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	261
AccB1I	GGYRCC	2 cut(s)	143, 261
AclI	AACGTT	1 cut(s)	278
AfaI	GTAC	3 cut(s)	263, 290, 307
AfiI	CCNNNNNNNGG	2 cut(s)	140, 271
AgsI	TTSAA	1 cut(s)	116
AluBI	AGCT	2 cut(s)	56, 299
AluI	AGCT	2 cut(s)	56, 299
Alw21I	GWGCWC	1 cut(s)	301
Alw26I	GTCTC	1 cut(s)	32
ApeKI	GCWGC	1 cut(s)	228
Asp718I	GGTACC	1 cut(s)	261
BanI	GGYRCC	2 cut(s)	143, 261
BanII	GRGCYC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	215
BciVI	GTATCC	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	256
BfuI	GTATCC	1 cut(s)	245
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
BmiI	GGNNCC	4 cut(s)	67, 145, 180, 263
BmrI	ACTGGG	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	109
Bpu10I	CCTNAGC	1 cut(s)	202
BsaAI	YACGTR	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 271
Bse1I	ACTGG	1 cut(s)	104
BseGI	GGATG	2 cut(s)	110, 333
BseLI	CCNNNNNNNGG	2 cut(s)	140, 271
BseNI	ACTGG	1 cut(s)	104
BseXI	GCAGC	1 cut(s)	215
BshNI	GGYRCC	2 cut(s)	143, 261
BsiHKAI	GWGCWC	1 cut(s)	301
BslI	CCNNNNNNNGG	2 cut(s)	140, 271
BsmAI	GTCTC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	301
BspLI	GGNNCC	4 cut(s)	67, 145, 180, 263
BspT107I	GGYRCC	2 cut(s)	143, 261
BsrI	ACTGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	43
BstBAI	YACGTR	1 cut(s)	288
BstC8I	GCNNGC	2 cut(s)	8, 12
BstDEI	CTNAG	1 cut(s)	202
BstF5I	GGATG	2 cut(s)	110, 333
BstMAI	GTCTC	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	215
BsuI	GTATCC	1 cut(s)	245
BtsCI	GGATG	2 cut(s)	110, 333
Cac8I	GCNNGC	2 cut(s)	8, 12
Csp6I	GTAC	3 cut(s)	262, 289, 306
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	4 cut(s)	56, 68, 195, 299
CviKI_1	RGCY	4 cut(s)	56, 68, 195, 299
CviQI	GTAC	3 cut(s)	262, 289, 306
DdeI	CTNAG	1 cut(s)	202
Ecl136II	GAGCTC	1 cut(s)	299
Eco24I	GRGCYC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	301
FaeI	CATG	1 cut(s)	161
FaiI	YATR	4 cut(s)	159, 237, 244, 283
FatI	CATG	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	2 cut(s)	117, 320
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	1 cut(s)	229
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	1 cut(s)	229
Hin1II	CATG	1 cut(s)	161
HinfI	GANTC	2 cut(s)	173, 327
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	2 cut(s)	172, 178
Hpy8I	GTNNAC	1 cut(s)	306
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	2 cut(s)	278, 287
HpyCH4V	TGCA	3 cut(s)	48, 157, 285
HpyF3I	CTNAG	1 cut(s)	202
HpySE526I	ACGT	2 cut(s)	278, 287
Hsp92II	CATG	1 cut(s)	161
KpnI	GGTACC	1 cut(s)	265
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	6 cut(s)	42, 66, 85, 98, 103, 244
Lsp1109I	GCAGC	1 cut(s)	215
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	2 cut(s)	278, 287
MfeI	CAATTG	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	301
MluCI	AATT	2 cut(s)	111, 186
MnlI	CCTC	3 cut(s)	178, 185, 275
MseI	TTAA	2 cut(s)	130, 151
MspA1I	CMGCKG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	111
NlaIII	CATG	1 cut(s)	161
NlaIV	GGNNCC	4 cut(s)	67, 145, 180, 263
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	173, 327
PkrI	GCNGC	1 cut(s)	230
Ppu21I	YACGTR	1 cut(s)	288
Psp124BI	GAGCTC	1 cut(s)	301
Psp1406I	AACGTT	1 cut(s)	278
PspN4I	GGNNCC	4 cut(s)	67, 145, 180, 263
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	3 cut(s)	263, 290, 307
RsaNI	GTAC	3 cut(s)	262, 289, 306
SacI	GAGCTC	1 cut(s)	301
SaqAI	TTAA	2 cut(s)	130, 151
SatI	GCNGC	1 cut(s)	229
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	8 cut(s)	58, 78, 149, 263, 267, 281, 290, 301
SfcI	CTRYAG	1 cut(s)	256
Sse9I	AATT	2 cut(s)	111, 186
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	2 cut(s)	281, 290
TaqI	TCGA	1 cut(s)	267
TasI	AATT	2 cut(s)	111, 186
TfiI	GAWTC	2 cut(s)	173, 327
Tru1I	TTAA	2 cut(s)	130, 151
Tru9I	TTAA	2 cut(s)	130, 151
TseI	GCWGC	1 cut(s)	228
TspDTI	ATGAA	1 cut(s)	121
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.