Rh3BG285500

Belongs to the universal ribosomal protein uS5 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001359
Physical Location & Seq
Forward (+)
28401056 .. 28405547
4492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG285500.1

Sequence Viewer

Length: 570 bp
ATGCGTGTCACACCATTGATAGAGAAGCTTGAGAAGGAGAAGCTCAAGACCACTGGGGATCTCAATTCCTATGAGGAGCCCACCGATTCTGATAGTGACGATGACGATGAGCGGGTCAGTCCCGATGCCATCAAGAAGAGGGTTGATGAGTTTCAGAGGAAGTTCACGCGACATGAGGAATTGCTCAAGAATTTCACACAGGCTGTTCCTAGAAATCAATGCAAAACTTTTGAAACTTGCAATGGATTCGATGTTAGATTAAGTGATGTGAACCGGACTTGTAAAGTTACAAGGTGTGTATCTCTGGCCTGCACCACTAGGACGGGTATGAAAGCGGGAAGAACTGTCGAAACCATTCTAAACTTGGCTGGTTTCAATAATGTCAAGTCCAAGATTGAAACTTCCAAGGATGTTCAAGAAAATTTTGGGCACACTGTTGTTGAGAAGTACCTTCTATCATCGATGCTAGATTTGAAGATCATTGAAGGGCCTTACTCAGCCGATGACGATGTGGCACAACCAAATGCATCAGACTCGTTCTGCAAACCAAAAGCAGTTGCAGTACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

189

Amino Acids

21.27

Weight (kDa)

5.56

Isoelectric Point (pI)

27.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 112
AccII CGCG 1 cut(s) 169
AciI CCGC 2 cut(s) 112, 335
AclWI GGATC 1 cut(s) 66
AcsI RAATTY 2 cut(s) 190, 421
AfaI GTAC 2 cut(s) 449, 564
AgsI TTSAA 6 cut(s) 233, 376, 398, 416, 475, 485
AluBI AGCT 2 cut(s) 28, 43
AluI AGCT 2 cut(s) 28, 43
AlwI GGATC 1 cut(s) 66
AoxI GGCC 2 cut(s) 306, 488
ApoI RAATTY 2 cut(s) 190, 421
Asp700I GAANNNNTTC 1 cut(s) 354
AspS9I GGNCC 1 cut(s) 488
BaeGI GKGCMC 1 cut(s) 432
BanII GRGCYC 1 cut(s) 81
BccI CCATC 1 cut(s) 137
BcgI CGANNNNNNTGC 4 cut(s) 229, 263, 516, 550
BfaI CTAG 3 cut(s) 210, 318, 467
BmcAI AGTACT 1 cut(s) 564
BmgT120I GGNCC 1 cut(s) 488
BmiI GGNNCC 1 cut(s) 78
BmrI ACTGGG 1 cut(s) 63
BmsI GCATC 3 cut(s) 115, 453, 536
BmuI ACTGGG 1 cut(s) 63
BpuEI CTTGAG 3 cut(s) 29, 50, 170
Bsa29I ATCGAT 1 cut(s) 461
BsaJI CCNNGG 1 cut(s) 405
BsaWI WCCGGW 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 58
Bse3DI GCAATG 1 cut(s) 247
BseCI ATCGAT 1 cut(s) 461
BseDI CCNNGG 1 cut(s) 405
BseGI GGATG 1 cut(s) 415
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 510
BseNI ACTGG 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 432
BsgI GTGCAG 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 169
BshFI GGCC 2 cut(s) 308, 490
BshVI ATCGAT 1 cut(s) 461
BsiSI CCGG 1 cut(s) 274
BslFI GGGAC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 105
BsnI GGCC 2 cut(s) 308, 490
Bsp1286I GDGCHC 2 cut(s) 81, 432
Bsp143I GATC 2 cut(s) 58, 477
BspACI CCGC 2 cut(s) 112, 335
BspANI GGCC 2 cut(s) 308, 490
BspCNI CTCAG 1 cut(s) 509
BspDI ATCGAT 1 cut(s) 461
BspFNI CGCG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 1 cut(s) 66
BsrBI CCGCTC 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 247
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 2 cut(s) 58, 477
BssT1I CCWWGG 1 cut(s) 405
Bst4CI ACNGT 2 cut(s) 346, 436
Bst6I CTCTTC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 1 cut(s) 496
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 169
BstKTI GATC 2 cut(s) 61, 480
BstMBI GATC 2 cut(s) 58, 477
BstSLI GKGCMC 1 cut(s) 432
BstUI CGCG 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
Bsu15I ATCGAT 1 cut(s) 461
BsuRI GGCC 2 cut(s) 308, 490
BsuTUI ATCGAT 1 cut(s) 461
BtsCI GGATG 1 cut(s) 415
BtsIMutI CAGTG 2 cut(s) 51, 432
Cac8I GCNNGC 1 cut(s) 310
Cfr13I GGNCC 1 cut(s) 488
ClaI ATCGAT 1 cut(s) 461
Csp6I GTAC 2 cut(s) 448, 563
CviAII CATG 1 cut(s) 173
CviJI RGCY 8 cut(s) 28, 43, 79, 203, 308, 368, 490, 500
CviKI_1 RGCY 8 cut(s) 28, 43, 79, 203, 308, 368, 490, 500
CviQI GTAC 2 cut(s) 448, 563
DdeI CTNAG 1 cut(s) 496
DpnI GATC 2 cut(s) 60, 479
DpnII GATC 2 cut(s) 58, 477
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco130I CCWWGG 1 cut(s) 405
Eco24I GRGCYC 1 cut(s) 81
EcoO109I RGGNCCY 1 cut(s) 488
EcoT14I CCWWGG 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 529
EcoT38I GRGCYC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 1 cut(s) 176
FaiI YATR 3 cut(s) 72, 174, 329
FaqI GGGAC 1 cut(s) 105
FatI CATG 1 cut(s) 172
FauI CCCGC 2 cut(s) 105, 328
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 1 cut(s) 81
FspBI CTAG 3 cut(s) 210, 318, 467
HaeIII GGCC 2 cut(s) 308, 490
HapII CCGG 1 cut(s) 274
Hin1II CATG 1 cut(s) 176
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 3 cut(s) 86, 246, 533
HpaII CCGG 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 165, 271
Hpy188I TCNGA 3 cut(s) 91, 156, 532
Hpy188III TCNNGA 5 cut(s) 46, 122, 133, 187, 416
Hpy8I GTNNAC 2 cut(s) 165, 271
HpyAV CCTTC 3 cut(s) 28, 461, 479
HpyCH4III ACNGT 2 cut(s) 346, 436
HpyCH4V TGCA 6 cut(s) 222, 240, 312, 527, 543, 560
HpyF3I CTNAG 1 cut(s) 496
Hsp92II CATG 1 cut(s) 176
Kzo9I GATC 2 cut(s) 58, 477
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 6 cut(s) 39, 185, 287, 290, 322, 354
LweI GCATC 3 cut(s) 115, 453, 536
MaeI CTAG 3 cut(s) 210, 318, 467
MaeIII GTNAC 3 cut(s) 7, 95, 286
MalI GATC 2 cut(s) 60, 479
MbiI CCGCTC 1 cut(s) 112
MboI GATC 2 cut(s) 58, 477
MboII GAAGA 3 cut(s) 148, 351, 487
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 2 cut(s) 81, 432
MluCI AATT 4 cut(s) 64, 179, 190, 421
MlyI GAGTC 1 cut(s) 527
MnlI CCTC 4 cut(s) 67, 132, 150, 169
Mph1103I ATGCAT 1 cut(s) 529
MroXI GAANNNNTTC 1 cut(s) 354
MseI TTAA 1 cut(s) 260
MspI CCGG 1 cut(s) 274
MvnI CGCG 1 cut(s) 169
NdeII GATC 2 cut(s) 58, 477
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 2 cut(s) 7, 95
NsiI ATGCAT 1 cut(s) 529
PdmI GAANNNNTTC 1 cut(s) 354
PfeI GAWTC 2 cut(s) 86, 246
PleI GAGTC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 527
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 488
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 2 cut(s) 449, 564
RsaNI GTAC 2 cut(s) 448, 563
SaqAI TTAA 1 cut(s) 260
Sau3AI GATC 2 cut(s) 58, 477
Sau96I GGNCC 1 cut(s) 488
ScaI AGTACT 1 cut(s) 564
SchI GAGTC 1 cut(s) 527
SduI GDGCHC 2 cut(s) 81, 432
SetI ASST 4 cut(s) 30, 45, 296, 453
SfaNI GCATC 3 cut(s) 115, 453, 536
SmlI CTYRAG 3 cut(s) 29, 44, 185
SmoI CTYRAG 3 cut(s) 29, 44, 185
Sse9I AATT 4 cut(s) 64, 179, 190, 421
SsiI CCGC 2 cut(s) 112, 335
SspMI CTAG 3 cut(s) 210, 318, 467
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 2 cut(s) 346, 436
TaqI TCGA 3 cut(s) 249, 348, 461
TasI AATT 4 cut(s) 64, 179, 190, 421
TatI WGTACW 1 cut(s) 562
TfiI GAWTC 2 cut(s) 86, 246
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 2 cut(s) 58, 439
TseFI GTSAC 2 cut(s) 7, 95
Tsp45I GTSAC 2 cut(s) 7, 95
TspDTI ATGAA 1 cut(s) 344
TspRI CASTG 2 cut(s) 58, 439
XapI RAATTY 2 cut(s) 190, 421
XcmI CCANNNNNNNNNTGG 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 3 cut(s) 210, 318, 467
ZrmI AGTACT 1 cut(s) 564
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.