Rroxscaffold_4G00310280

Belongs to the universal ribosomal protein uS5 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001359
Physical Location & Seq
Forward (+)
32194089 .. 32196823
2735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00310280.1

Sequence Viewer

Length: 324 bp
ATGAAGGAGAAAGATGACAAAACCGTTAGAAAAGCCAAATGCTATATTGAGAAGAAACTTGAAGAAAAGCTAGCAGAGTTGGATCATACTTTTGGAAAGAAAGGAAAGGTTCTAGAGAAAGAGATAAGAGATCTAGCAGAGGAAAGAAATGATTTGACAGAGAAGAAGAGAAGCCCTATCTATAGAAAAGGCTCGGCGGTTCGGTTTGAAGCGGTTGAGGCTCCGATCGCGAAGGTTGAGGGTGCGAGCTCGGCGGCTTCGGTACGGTTTTCTCGGTCGGCGACGAAGGTATCCGGGCCTCCGTTGATCGCTTTATTGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

107

Amino Acids

11.99

Weight (kDa)

9.65

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 230
AciI CCGC 3 cut(s) 197, 212, 254
AclWI GGATC 1 cut(s) 90
AfaI GTAC 1 cut(s) 264
AgsI TTSAA 3 cut(s) 62, 209, 319
AluBI AGCT 2 cut(s) 70, 249
AluI AGCT 2 cut(s) 70, 249
Alw21I GWGCWC 1 cut(s) 251
AlwI GGATC 1 cut(s) 90
AoxI GGCC 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 296
AsuC2I CCSGG 1 cut(s) 295
AsuNHI GCTAGC 1 cut(s) 70
BaeI ACNNNNGTAYC 2 cut(s) 273, 306
BanII GRGCYC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 251
BciVI GTATCC 1 cut(s) 301
BcnI CCSGG 1 cut(s) 295
BfaI CTAG 3 cut(s) 71, 113, 134
BfmI CTRYAG 1 cut(s) 181
BfuI GTATCC 1 cut(s) 301
BglII AGATCT 1 cut(s) 130
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 295
BmtI GCTAGC 1 cut(s) 74
BpuMI CCSGG 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 230
Bsh1285I CGRYCG 2 cut(s) 228, 278
BshFI GGCC 1 cut(s) 298
BsiEI CGRYCG 2 cut(s) 228, 278
BsiHKAI GWGCWC 1 cut(s) 251
BsiSI CCGG 1 cut(s) 294
BsnI GGCC 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 4 cut(s) 82, 130, 225, 306
Bsp68I TCGCGA 1 cut(s) 230
BspACI CCGC 3 cut(s) 197, 212, 254
BspANI GGCC 1 cut(s) 298
BspFNI CGCG 1 cut(s) 230
BspLI GGNNCC 1 cut(s) 222
BspOI GCTAGC 1 cut(s) 74
BspPI GGATC 1 cut(s) 90
BssMI GATC 4 cut(s) 82, 130, 225, 306
Bst4CI ACNGT 2 cut(s) 25, 267
Bst6I CTCTTC 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 72, 247
BstFNI CGCG 1 cut(s) 230
BstKTI GATC 4 cut(s) 85, 133, 228, 309
BstMBI GATC 4 cut(s) 82, 130, 225, 306
BstMCI CGRYCG 2 cut(s) 228, 278
BstMWI GCNNNNNNNGC 3 cut(s) 218, 227, 251
BstSCI CCNGG 1 cut(s) 293
BstSFI CTRYAG 1 cut(s) 181
BstUI CGCG 1 cut(s) 230
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuI GTATCC 1 cut(s) 301
BsuRI GGCC 1 cut(s) 298
BtuMI TCGCGA 1 cut(s) 230
Cac8I GCNNGC 2 cut(s) 72, 247
Cfr13I GGNCC 1 cut(s) 296
Csp6I GTAC 1 cut(s) 263
CviJI RGCY 8 cut(s) 35, 70, 174, 192, 221, 249, 257, 298
CviKI_1 RGCY 8 cut(s) 35, 70, 174, 192, 221, 249, 257, 298
CviQI GTAC 1 cut(s) 263
DpnI GATC 4 cut(s) 84, 132, 227, 308
DpnII GATC 4 cut(s) 82, 130, 225, 306
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Ecl136II GAGCTC 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 249
EcoICRI GAGCTC 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 251
FaiI YATR 3 cut(s) 45, 87, 183
Fnu4HI GCNGC 1 cut(s) 255
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 3 cut(s) 71, 113, 134
GluI GCNGC 1 cut(s) 255
HaeIII GGCC 1 cut(s) 298
HapII CCGG 1 cut(s) 294
HpaII CCGG 1 cut(s) 294
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 2 cut(s) 113, 229
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 226, 280
HpyCH4III ACNGT 2 cut(s) 25, 267
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 227, 251
Kzo9I GATC 4 cut(s) 82, 130, 225, 306
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 1 cut(s) 307
MaeI CTAG 3 cut(s) 71, 113, 134
MalI GATC 4 cut(s) 84, 132, 227, 308
MboI GATC 4 cut(s) 82, 130, 225, 306
MboII GAAGA 4 cut(s) 64, 74, 175, 178
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 4 cut(s) 133, 211, 232, 309
MspI CCGG 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 295
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 3 cut(s) 218, 227, 251
NciI CCSGG 1 cut(s) 295
NdeII GATC 4 cut(s) 82, 130, 225, 306
NheI GCTAGC 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 222
NmeAIII GCCGAG 2 cut(s) 173, 230
NruI TCGCGA 1 cut(s) 230
PkrI GCNGC 1 cut(s) 256
Ple19I CGATCG 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 296
PsuI RGATCY 1 cut(s) 130
PvuI CGATCG 1 cut(s) 228
RruI TCGCGA 1 cut(s) 230
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SacI GAGCTC 1 cut(s) 251
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 4 cut(s) 82, 130, 225, 306
Sau96I GGNCC 1 cut(s) 296
ScrFI CCNGG 1 cut(s) 295
SduI GDGCHC 1 cut(s) 251
SetI ASST 5 cut(s) 72, 111, 237, 251, 291
SfcI CTRYAG 1 cut(s) 181
SsiI CCGC 3 cut(s) 197, 212, 254
SspMI CTAG 3 cut(s) 71, 113, 134
SstI GAGCTC 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 293
TaaI ACNGT 2 cut(s) 25, 267
TaqII GACCGA 1 cut(s) 264
TauI GCSGC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 291
XbaI TCTAGA 1 cut(s) 112
XspI CTAG 3 cut(s) 71, 113, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.