Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001359

Physical Location & Seq

Genomic Coordinates Reverse (-)

60136 .. 64616

Gene Structure 4481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026022

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGTCCAAATCGCAAGCGTTCTCGTGGTCGCGTCTCATCTTCAATCAAGCAATCAACAAAACCCGCAACGCCCCACTCCCCTTCATCTCCTCCACCTTACCACACTTGCTCAGGTCCTCTGGGCAGACCCATTACTATTCCACAGTATCAGACAGAGTAGTCCGTGACCTTCTGGCCGAGGTCGAGAGAGAAAAGCAGAGAGAAAGGGAGCAGAGGAAAAGGGCTGGTCTCGACACCAAAGACATTGACCAAGAAGATGAGGAGGACTACATGCGTGTCACTCCATTGATTGAGAAGCTTGAGAAGGAGAAGCTCAAGGCCACTGGGGATCTCAATTCCTATGAGGAGCCCACCGATTCGGATAGTGACGACGACGACGAGCGCTTTACTCCCGATGCCGTCAAGAAGAGGTTTGATGAGTTTCAGAGGAAGTTCACGCGACACGAGGAATTGCTCAAGAATTTCACACAGGCTGAGACACTTGACGATGCTTTTAAATGGATGAATAAAATTGACAAGTTTGAGCAAAAGCATTTCCGGCTTCGCCCTGAATATAGAGTCATTGGTGAATTGATGAACCGTCTAAAAGTAGCTGAGGGCAAGGATAAATTCATTCTGCAGCACAAACTAAACAGGGCTATGCGATTGGGTTTCGATGTTAGATTAATTGATGTGAACCGGACTTGTAAAGTCACAAAGGGAGGACAAGTGGTCAAATACACTGCTATATTAGTTTGTGGGAACTATCATGGTGTTGTAGGTTATGCTAAAGCAAAAGGTCCAGCTGTCCCCCTCGCCCTCCAGAAGGCATATGAGAAATGCTTTCAGAATCTCCACTATGTAGAACGACATGAGGAGCATACAATTGCGCATGCAATACAAACTACATATAAAAAAACAAAGGTTTATCTCTGGCCTGCACCCACTAGGACGGGTATGAAAGCAGGAAGAACTGTCGAAACCATTCTAAACTTGGCAGGTTTCAATAATGTCAAGTCAAAGGTTGTTGGTTCAAGGAATCCTCATAATACAGTGAAGGCTGTTTTCAAAGCCCTTAATGCGATTGAAACGCCCAAGGATGTTCAAGAAAAGTTTGGACGCACTGTTGTTGAGAAGTCCCTCGTATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

377

Amino Acids

43.48

Weight (kDa)

9.43

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S5	PF00333	218 - 282	1.2e-18	Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C	PF03719	296 - 364	1.8e-23	Ribosomal protein S5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64880
fragaria_vesca	FvH4_7g34290
malus_domestica	MD06G1015700.v1.1 MD07G1311200.v1.1 MD14G1141700.v1.1
prunus_persica	Prupe.2G329900_v2.0.a1 Prupe.2G329900_v2.0.a1
pyrus_communis	pycom07g28350
rosa_chinensis	RchiOBHm_Chr1g0384661 RchiOBHm_Chr3g0482781 RchiOBHm_Chr3g0482791 RchiOBHm_Chr3g0482801 RchiOBHm_Chr4g0404671
rosa_laevigata	RLG00000023329 RLG00000023333 RLG00000026022
rosa_multiflora	Rmu_co8059324.1_g000001 Rmu_co8197734.1_g000001 Rmu_co8237749.1_g000001 Rmu_co8374597.1_g000001 Rmu_sc0014854.1_g000001 Rmu_sc0026287.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113600 Rroxscaffold_2G00131740 Rroxscaffold_3G00246900 Rroxscaffold_3G00264250 Rroxscaffold_4G00276480 Rroxscaffold_4G00310280 Rroxscaffold_5G00348850 Rroxscaffold_5G00354050 Rroxscaffold_6G00398930 Rroxscaffold_6G00398960 Rroxscaffold_7G00210840
rosa_rugosa	Rorug01G0450500 Rorug01G0450600 Rorug03G0198300 Rorug03G0198400 Rorug04G0048600
rosa_samantha	Rh1AG475100 Rh1BG433300 Rh1CG446500 Rh1CG446700 Rh1DG465800 Rh3AG249900 Rh3BG285100 Rh3BG285500 Rh3CG282800 Rh3CG283100 Rh3DG278600 Rh3DG278900 Rh4BG118500
rosa_wichuraiana	Rw1G039750 Rw3G022540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
Acc16I	TGCGCA	1 cut(s)	870
Acc36I	ACCTGC	1 cut(s)	968
AccII	CGCG	2 cut(s)	31, 439
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	336
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	2 cut(s)	460, 608
AfeI	AGCGCT	1 cut(s)	383
AfiI	CCNNNNNNNGG	1 cut(s)	805
AgsI	TTSAA	6 cut(s)	43, 985, 1014, 1048, 1067, 1085
AhdI	GACNNNNNGTC	1 cut(s)	710
AluBI	AGCT	4 cut(s)	298, 313, 593, 785
AluI	AGCT	4 cut(s)	298, 313, 593, 785
Alw26I	GTCTC	3 cut(s)	38, 233, 470
AlwI	GGATC	1 cut(s)	336
Aor51HI	AGCGCT	1 cut(s)	383
AoxI	GGCC	3 cut(s)	174, 318, 914
ApeKI	GCWGC	1 cut(s)	619
ApoI	RAATTY	2 cut(s)	460, 608
AseI	ATTAAT	1 cut(s)	665
Asp700I	GAANNNNTTC	1 cut(s)	963
AspLEI	GCGC	2 cut(s)	384, 871
AspS9I	GGNCC	2 cut(s)	114, 779
AsuHPI	GGTGA	1 cut(s)	578
AvaII	GGWCC	2 cut(s)	114, 779
BanII	GRGCYC	1 cut(s)	351
BauI	CACGAG	2 cut(s)	22, 443
BbvCI	CCTCAGC	1 cut(s)	594
BbvI	GCAGC	1 cut(s)	631
BceAI	ACGGC	1 cut(s)	383
BcoDI	GTCTC	3 cut(s)	38, 233, 470
BfaI	CTAG	1 cut(s)	927
BfmI	CTRYAG	1 cut(s)	617
BfoI	RGCGCY	1 cut(s)	385
BfuAI	ACCTGC	1 cut(s)	968
BisI	GCNGC	1 cut(s)	620
BlsI	GCNGC	1 cut(s)	621
Bme18I	GGWCC	2 cut(s)	114, 779
BmeRI	GACNNNNNGTC	1 cut(s)	710
BmgT120I	GGNCC	2 cut(s)	114, 779
BmiI	GGNNCC	1 cut(s)	348
BmrI	ACTGGG	1 cut(s)	333
BmsI	GCATC	2 cut(s)	385, 478
BmuI	ACTGGG	1 cut(s)	333
BpmI	CTGGAG	1 cut(s)	785
Bpu10I	CCTNAGC	2 cut(s)	110, 594
BpuEI	CTTGAG	3 cut(s)	299, 320, 440
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	177, 1074
BsaWI	WCCGGW	1 cut(s)	678
BsaXI	ACNNNNNCTCC	2 cut(s)	693, 723
Bsc4I	CCNNNNNNNGG	1 cut(s)	805
Bse1I	ACTGG	1 cut(s)	328
BseDI	CCNNGG	2 cut(s)	177, 1074
BseGI	GGATG	2 cut(s)	507, 1084
BseLI	CCNNNNNNNGG	1 cut(s)	805
BseMII	CTCAG	3 cut(s)	124, 465, 585
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	4 cut(s)	79, 275, 359, 869
BseXI	GCAGC	1 cut(s)	631
BsgI	GTGCAG	1 cut(s)	903
Bsh1236I	CGCG	2 cut(s)	31, 439
BshFI	GGCC	3 cut(s)	176, 320, 916
BsiSI	CCGG	2 cut(s)	538, 679
BslFI	GGGAC	2 cut(s)	773, 1102
BslI	CCNNNNNNNGG	1 cut(s)	805
BsmAI	GTCTC	3 cut(s)	38, 233, 470
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	2 cut(s)	773, 1102
BsnI	GGCC	3 cut(s)	176, 320, 916
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	3 cut(s)	176, 320, 916
BspCNI	CTCAG	3 cut(s)	123, 466, 586
BspFNI	CGCG	2 cut(s)	31, 439
BspLI	GGNNCC	1 cut(s)	348
BspMAI	CTGCAG	1 cut(s)	621
BspMI	ACCTGC	1 cut(s)	968
BspPI	GGATC	1 cut(s)	336
BspTNI	GGTCTC	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	2 cut(s)	177, 1074
BssMI	GATC	1 cut(s)	328
BssSI	CACGAG	2 cut(s)	22, 443
BssT1I	CCWWGG	1 cut(s)	1074
Bst2BI	CACGAG	2 cut(s)	22, 443
Bst4CI	ACNGT	5 cut(s)	145, 581, 955, 1033, 1105
Bst6I	CTCTTC	1 cut(s)	401
BstC8I	GCNNGC	3 cut(s)	15, 873, 918
BstDEI	CTNAG	3 cut(s)	110, 474, 594
BstENI	CCTNNNNNAGG	1 cut(s)	803
BstF5I	GGATG	2 cut(s)	507, 1084
BstFNI	CGCG	2 cut(s)	31, 439
BstH2I	RGCGCY	1 cut(s)	385
BstHHI	GCGC	2 cut(s)	384, 871
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	3 cut(s)	38, 233, 470
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	2 cut(s)	538, 1058
BstNSI	RCATGY	2 cut(s)	274, 875
BstSFI	CTRYAG	1 cut(s)	617
BstUI	CGCG	2 cut(s)	31, 439
BstV1I	GCAGC	1 cut(s)	631
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	3 cut(s)	176, 320, 916
BtsCI	GGATG	2 cut(s)	507, 1084
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	4 cut(s)	321, 720, 1038, 1101
BveI	ACCTGC	1 cut(s)	968
Cac8I	GCNNGC	3 cut(s)	15, 873, 918
CfoI	GCGC	2 cut(s)	384, 871
Cfr13I	GGNCC	2 cut(s)	114, 779
CseI	GACGC	2 cut(s)	20, 1107
CviAII	CATG	4 cut(s)	271, 749, 851, 872
DdeI	CTNAG	3 cut(s)	110, 474, 594
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
DraI	TTTAAA	1 cut(s)	496
DrdI	GACNNNNNNGTC	1 cut(s)	158
DriI	GACNNNNNGTC	1 cut(s)	710
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	401
Eam1105I	GACNNNNNGTC	1 cut(s)	710
EarI	CTCTTC	1 cut(s)	401
Eco130I	CCWWGG	1 cut(s)	1074
Eco24I	GRGCYC	1 cut(s)	351
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	114, 779
Eco47III	AGCGCT	1 cut(s)	383
EcoNI	CCTNNNNNAGG	1 cut(s)	803
EcoO109I	RGGNCCY	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	1074
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	1074
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	4 cut(s)	274, 752, 854, 875
FaqI	GGGAC	2 cut(s)	773, 1102
FatI	CATG	4 cut(s)	270, 748, 850, 871
FauI	CCCGC	1 cut(s)	71
FauNDI	CATATG	1 cut(s)	811
Fnu4HI	GCNGC	1 cut(s)	620
FokI	GGATG	2 cut(s)	514, 1091
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	1 cut(s)	620
FspBI	CTAG	1 cut(s)	927
FspI	TGCGCA	1 cut(s)	870
GlaI	GCGC	2 cut(s)	383, 870
GluI	GCNGC	1 cut(s)	620
GsuI	CTGGAG	1 cut(s)	785
HaeII	RGCGCY	1 cut(s)	385
HaeIII	GGCC	3 cut(s)	176, 320, 916
HapII	CCGG	2 cut(s)	538, 679
HgaI	GACGC	2 cut(s)	20, 1107
HhaI	GCGC	2 cut(s)	384, 871
Hin1II	CATG	4 cut(s)	274, 752, 854, 875
Hin6I	GCGC	2 cut(s)	382, 869
HinP1I	GCGC	2 cut(s)	382, 869
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	4 cut(s)	356, 558, 829, 1018
HpaII	CCGG	2 cut(s)	538, 679
HphI	GGTGA	1 cut(s)	578
Hpy166II	GTNNAC	2 cut(s)	435, 676
Hpy188I	TCNGA	4 cut(s)	151, 361, 426, 828
Hpy188III	TCNNGA	7 cut(s)	184, 230, 392, 403, 457, 802, 1085
Hpy8I	GTNNAC	2 cut(s)	435, 676
Hpy99I	CGWCG	3 cut(s)	374, 377, 380
HpyAV	CCTTC	5 cut(s)	91, 179, 298, 799, 1030
HpyCH4III	ACNGT	5 cut(s)	145, 581, 955, 1033, 1105
HpyCH4V	TGCA	3 cut(s)	619, 875, 920
HpyF10VI	GCNNNNNNNGC	2 cut(s)	538, 1058
HpyF3I	CTNAG	3 cut(s)	110, 474, 594
Hsp92II	CATG	4 cut(s)	274, 752, 854, 875
HspAI	GCGC	2 cut(s)	382, 869
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	3 cut(s)	208, 346, 856
Lsp1109I	GCAGC	1 cut(s)	631
LweI	GCATC	2 cut(s)	385, 478
MaeI	CTAG	1 cut(s)	927
MaeIII	GTNAC	4 cut(s)	164, 277, 365, 691
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	4 cut(s)	31, 266, 418, 960
MfeI	CAATTG	1 cut(s)	864
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	8 cut(s)	334, 449, 460, 510, 569, 608, 666, 864
MlyI	GAGTC	1 cut(s)	567
MroXI	GAANNNNTTC	1 cut(s)	963
MseI	TTAA	3 cut(s)	495, 665, 1056
MspA1I	CMGCKG	1 cut(s)	785
MspI	CCGG	2 cut(s)	538, 679
MunI	CAATTG	1 cut(s)	864
MvnI	CGCG	2 cut(s)	31, 439
MwoI	GCNNNNNNNGC	2 cut(s)	538, 1058
NdeI	CATATG	1 cut(s)	811
NdeII	GATC	1 cut(s)	328
NlaIII	CATG	4 cut(s)	274, 752, 854, 875
NlaIV	GGNNCC	1 cut(s)	348
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	4 cut(s)	164, 277, 365, 691
NsbI	TGCGCA	1 cut(s)	870
NspI	RCATGY	2 cut(s)	274, 875
PaeI	GCATGC	1 cut(s)	875
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	963
PfeI	GAWTC	3 cut(s)	356, 829, 1018
PkrI	GCNGC	1 cut(s)	621
PleI	GAGTC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	566
PpuMI	RGGWCCY	1 cut(s)	114
PshBI	ATTAAT	1 cut(s)	665
Psp5II	RGGWCCY	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	2 cut(s)	114, 779
PspPPI	RGGWCCY	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	621
PsuI	RGATCY	1 cut(s)	328
PvuII	CAGCTG	1 cut(s)	785
SaqAI	TTAA	3 cut(s)	495, 665, 1056
SatI	GCNGC	1 cut(s)	620
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	2 cut(s)	114, 779
SchI	GAGTC	1 cut(s)	567
SduI	GDGCHC	1 cut(s)	351
SfaNI	GCATC	2 cut(s)	385, 478
SfcI	CTRYAG	1 cut(s)	617
SinI	GGWCC	2 cut(s)	114, 779
SmlI	CTYRAG	3 cut(s)	299, 314, 455
SmoI	CTYRAG	3 cut(s)	299, 314, 455
SphI	GCATGC	1 cut(s)	875
Sse9I	AATT	8 cut(s)	334, 449, 460, 510, 569, 608, 666, 864
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	1 cut(s)	927
StyI	CCWWGG	1 cut(s)	1074
TaaI	ACNGT	5 cut(s)	145, 581, 955, 1033, 1105
TaqI	TCGA	4 cut(s)	183, 231, 654, 957
TasI	AATT	8 cut(s)	334, 449, 460, 510, 569, 608, 666, 864
TfiI	GAWTC	3 cut(s)	356, 829, 1018
Tru1I	TTAA	3 cut(s)	495, 665, 1056
Tru9I	TTAA	3 cut(s)	495, 665, 1056
TscAI	CASTG	4 cut(s)	328, 727, 1038, 1108
TseFI	GTSAC	4 cut(s)	164, 277, 365, 691
TseI	GCWGC	1 cut(s)	619
Tsp45I	GTSAC	4 cut(s)	164, 277, 365, 691
TspDTI	ATGAA	5 cut(s)	73, 518, 590, 601, 953
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	4 cut(s)	328, 727, 1038, 1108
VpaK11BI	GGWCC	2 cut(s)	114, 779
VspI	ATTAAT	1 cut(s)	665
XagI	CCTNNNNNAGG	1 cut(s)	803
XapI	RAATTY	2 cut(s)	460, 608
XceI	RCATGY	2 cut(s)	274, 875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	970
XmnI	GAANNNNTTC	1 cut(s)	963
XspI	CTAG	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.