Rmu_sc0014854.1_g000001

Belongs to the universal ribosomal protein uS5 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014854.1
OG0001359
Physical Location & Seq
Forward (+)
1 .. 2506
2506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014854.1_g000001.1.cds

Sequence Viewer

Length: 666 bp
acctcgttgaaacccggtgaccgcccgccagtcctagtctcctcgcgagccgactgtcagcctcaccagatcaacccggcaccgtacttccagtcccagtctccccaggagccgactgccagcacaaccgccattgttacttccagcgaagcaaggcgcttgaagaagaagtcaggtcacgggactaccccaacgactgcaccccgcggtgctggcacccctgcgcaaccactcgcccaaaagagactgtttgcacaccagctgacccattactattccacggtatcagacagagtagtccatgacattctggccgaggtcgagagagaaaggcacagagaaagagagcagaggaaaagggctggtctcaacaccaaagacattgaccaagaagatgaggaggactacatgcgtgtcacaccatttatagagaagcttgagaaggagaagctcaagaccattggggatctcaattcctatgaggagcccaccgattctgatagtgatgatgatgaggagcagttcagtcccgatgccatcaagaagagagttgatgagtttcagaggaagttcacgcaacacgaggagttgctcaagaatttcacacaggctggcttggttttctcatttgcagttacttgggagttgtctcttcttagtaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

221

Amino Acids

25.15

Weight (kDa)

5.7

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 296
Acc16I TGCGCA 1 cut(s) 225
AccB1I GGYRCC 2 cut(s) 79, 215
AccII CGCG 2 cut(s) 46, 207
AciI CCGC 5 cut(s) 22, 26, 129, 205, 207
AclWI GGATC 1 cut(s) 474
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 1 cut(s) 598
AfaI GTAC 1 cut(s) 86
AgsI TTSAA 2 cut(s) 10, 163
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 3 cut(s) 262, 436, 451
AluI AGCT 3 cut(s) 262, 436, 451
Alw26I GTCTC 5 cut(s) 43, 105, 238, 371, 654
AlwI GGATC 1 cut(s) 474
AoxI GGCC 1 cut(s) 312
ApoI RAATTY 1 cut(s) 598
AspLEI GCGC 2 cut(s) 159, 226
AsuC2I CCSGG 2 cut(s) 15, 77
AsuHPI GGTGA 2 cut(s) 29, 56
BanI GGYRCC 2 cut(s) 79, 215
BanII GRGCYC 1 cut(s) 489
BauI CACGAG 1 cut(s) 581
BccI CCATC 1 cut(s) 545
BciT130I CCWGG 1 cut(s) 107
BcnI CCSGG 2 cut(s) 15, 77
BcoDI GTCTC 5 cut(s) 43, 105, 238, 371, 654
BfaI CTAG 1 cut(s) 35
BfoI RGCGCY 1 cut(s) 160
Bme1390I CCNGG 3 cut(s) 15, 77, 107
BmiI GGNNCC 4 cut(s) 81, 111, 217, 486
BmrFI CCNGG 3 cut(s) 15, 77, 107
BmrI ACTGGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 523
BmuI ACTGGG 1 cut(s) 91
BpuEI CTTGAG 3 cut(s) 437, 458, 578
BpuMI CCSGG 2 cut(s) 15, 77
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 4 cut(s) 105, 205, 279, 315
Bse1I ACTGG 3 cut(s) 29, 91, 97
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 4 cut(s) 105, 205, 279, 315
BseNI ACTGG 3 cut(s) 29, 91, 97
BseRI GAGGAG 5 cut(s) 31, 413, 497, 530, 599
BsgI GTGCAG 1 cut(s) 183
Bsh1236I CGCG 2 cut(s) 46, 207
BshFI GGCC 1 cut(s) 314
BshNI GGYRCC 2 cut(s) 79, 215
BsiSI CCGG 2 cut(s) 15, 77
BslFI GGGAC 3 cut(s) 79, 196, 513
BsmAI GTCTC 5 cut(s) 43, 105, 238, 371, 654
BsmFI GGGAC 3 cut(s) 79, 196, 513
BsnI GGCC 1 cut(s) 314
Bso31I GGTCTC 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 489
Bsp143I GATC 2 cut(s) 69, 466
Bsp68I TCGCGA 1 cut(s) 46
BspACI CCGC 5 cut(s) 22, 26, 129, 205, 207
BspANI GGCC 1 cut(s) 314
BspFNI CGCG 2 cut(s) 46, 207
BspLI GGNNCC 4 cut(s) 81, 111, 217, 486
BspPI GGATC 1 cut(s) 474
BspT107I GGYRCC 2 cut(s) 79, 215
BspTNI GGTCTC 1 cut(s) 371
BsrI ACTGG 3 cut(s) 29, 91, 97
BssECI CCNNGG 4 cut(s) 105, 205, 279, 315
BssMI GATC 2 cut(s) 69, 466
BssSI CACGAG 1 cut(s) 581
Bst2BI CACGAG 1 cut(s) 581
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 4 cut(s) 56, 84, 249, 283
Bst6I CTCTTC 2 cut(s) 539, 657
BstC8I GCNNGC 5 cut(s) 26, 48, 121, 214, 613
BstDEI CTNAG 1 cut(s) 656
BstDSI CCRYGG 2 cut(s) 205, 279
BstEII GGTNACC 1 cut(s) 17
BstFNI CGCG 2 cut(s) 46, 207
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 2 cut(s) 159, 226
BstKTI GATC 2 cut(s) 72, 469
BstMAI GTCTC 5 cut(s) 43, 105, 238, 371, 654
BstMBI GATC 2 cut(s) 69, 466
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstNI CCWGG 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 412
BstPI GGTNACC 1 cut(s) 17
BstSCI CCNGG 3 cut(s) 13, 75, 105
BstUI CGCG 2 cut(s) 46, 207
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BsuRI GGCC 1 cut(s) 314
BtgI CCRYGG 2 cut(s) 205, 279
BtuMI TCGCGA 1 cut(s) 46
Cac8I GCNNGC 5 cut(s) 26, 48, 121, 214, 613
CfoI GCGC 2 cut(s) 159, 226
Cfr42I CCGCGG 1 cut(s) 208
Csp6I GTAC 1 cut(s) 85
CviAII CATG 2 cut(s) 302, 409
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 1 cut(s) 656
DpnI GATC 2 cut(s) 71, 468
DpnII GATC 2 cut(s) 69, 466
DrdI GACNNNNNNGTC 1 cut(s) 296
DseDI GACNNNNNNGTC 1 cut(s) 296
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 2 cut(s) 539, 657
EarI CTCTTC 2 cut(s) 539, 657
Eco24I GRGCYC 1 cut(s) 489
Eco31I GGTCTC 1 cut(s) 371
Eco91I GGTNACC 1 cut(s) 17
EcoO65I GGTNACC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 489
FaeI CATG 2 cut(s) 305, 412
FaiI YATR 4 cut(s) 303, 410, 428, 480
FaqI GGGAC 3 cut(s) 79, 196, 513
FatI CATG 2 cut(s) 301, 408
FauI CCCGC 2 cut(s) 33, 212
FriOI GRGCYC 1 cut(s) 489
FspBI CTAG 1 cut(s) 35
FspI TGCGCA 1 cut(s) 225
GlaI GCGC 2 cut(s) 158, 225
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 1 cut(s) 314
HapII CCGG 2 cut(s) 15, 77
HhaI GCGC 2 cut(s) 159, 226
Hin1II CATG 2 cut(s) 305, 412
Hin6I GCGC 2 cut(s) 157, 224
HinP1I GCGC 2 cut(s) 157, 224
HindIII AAGCTT 1 cut(s) 434
HinfI GANTC 1 cut(s) 494
HpaII CCGG 2 cut(s) 15, 77
HphI GGTGA 2 cut(s) 29, 56
Hpy166II GTNNAC 1 cut(s) 573
Hpy188I TCNGA 3 cut(s) 289, 499, 564
Hpy188III TCNNGA 6 cut(s) 45, 322, 454, 530, 541, 595
Hpy8I GTNNAC 1 cut(s) 573
HpyAV CCTTC 1 cut(s) 436
HpyCH4III ACNGT 4 cut(s) 56, 84, 249, 283
HpyCH4V TGCA 3 cut(s) 200, 254, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 1 cut(s) 656
Hsp92II CATG 2 cut(s) 305, 412
HspAI GCGC 2 cut(s) 157, 224
KspI CCGCGG 1 cut(s) 208
Kzo9I GATC 2 cut(s) 69, 466
LmnI GCTCC 3 cut(s) 109, 484, 517
LweI GCATC 1 cut(s) 523
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 5 cut(s) 17, 136, 176, 415, 634
MalI GATC 2 cut(s) 71, 468
MboI GATC 2 cut(s) 69, 466
MboII GAAGA 5 cut(s) 175, 178, 404, 556, 644
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 1 cut(s) 489
MluCI AATT 3 cut(s) 472, 598, 661
MspA1I CMGCKG 2 cut(s) 207, 262
MspI CCGG 2 cut(s) 15, 77
MspR9I CCNGG 3 cut(s) 15, 77, 107
MvaI CCWGG 1 cut(s) 107
MvnI CGCG 2 cut(s) 46, 207
MwoI GCNNNNNNNGC 1 cut(s) 213
NciI CCSGG 2 cut(s) 15, 77
NdeII GATC 2 cut(s) 69, 466
NlaIII CATG 2 cut(s) 305, 412
NlaIV GGNNCC 4 cut(s) 81, 111, 217, 486
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 3 cut(s) 17, 176, 415
NruI TCGCGA 1 cut(s) 46
NsbI TGCGCA 1 cut(s) 225
NspI RCATGY 1 cut(s) 412
PfeI GAWTC 1 cut(s) 494
Psp6I CCWGG 1 cut(s) 105
PspEI GGTNACC 1 cut(s) 17
PspGI CCWGG 1 cut(s) 105
PspN4I GGNNCC 4 cut(s) 81, 111, 217, 486
PsuI RGATCY 1 cut(s) 466
PvuII CAGCTG 1 cut(s) 262
RruI TCGCGA 1 cut(s) 46
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SacII CCGCGG 1 cut(s) 208
Sau3AI GATC 2 cut(s) 69, 466
ScrFI CCNGG 3 cut(s) 15, 77, 107
SduI GDGCHC 1 cut(s) 489
SetI ASST 5 cut(s) 178, 264, 321, 438, 453
SfaNI GCATC 1 cut(s) 523
Sfr303I CCGCGG 1 cut(s) 208
SgrBI CCGCGG 1 cut(s) 208
SmlI CTYRAG 3 cut(s) 437, 452, 593
SmoI CTYRAG 3 cut(s) 437, 452, 593
Sse9I AATT 3 cut(s) 472, 598, 661
SsiI CCGC 5 cut(s) 22, 26, 129, 205, 207
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 3 cut(s) 13, 75, 105
TaaI ACNGT 4 cut(s) 56, 84, 249, 283
TaqI TCGA 1 cut(s) 321
TasI AATT 3 cut(s) 472, 598, 661
TfiI GAWTC 1 cut(s) 494
TseFI GTSAC 3 cut(s) 17, 176, 415
Tsp45I GTSAC 3 cut(s) 17, 176, 415
XapI RAATTY 1 cut(s) 598
XceI RCATGY 1 cut(s) 412
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.