Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001359

Physical Location & Seq

Genomic Coordinates Reverse (-)

28867820 .. 28869666

Gene Structure 1847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44762

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCGTGTCACACCATTGATAGAGAAGCTTGAGAAGGAGAAGCTCGAGACCACTGGGGATCTCAATTCCTATGAGGAGCCCACTGATTCTGATAGTGACGATGACGACGAGCGGGTCAGTCCTGATGCCATCAAGAAGAGGGTTGATGAGTTTCAGAGGAAGTTCACGCGACATGAGGAATTGCTCAAGAATTTCACACAGGCTGCGTGTCACAAACTAAACAGGGCTATGCGACTGGTGCAATGGAAGGAAGCCTATGATCCAAATGATCCTGTCAACTATGGAGTCATTCAGGAACAACTGGAGCCCTCATTTGATCTTCTAGAAGATGCTGGATTTGAAAGAAAAAAAATCAGTCGAGGAGTTGATGATGATGATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

127

Amino Acids

14.8

Weight (kDa)

4.6

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64880
fragaria_vesca	FvH4_7g34290
malus_domestica	MD06G1015700.v1.1 MD07G1311200.v1.1 MD14G1141700.v1.1
prunus_persica	Prupe.2G329900_v2.0.a1 Prupe.2G329900_v2.0.a1
pyrus_communis	pycom07g28350
rosa_chinensis	RchiOBHm_Chr1g0384661 RchiOBHm_Chr3g0482781 RchiOBHm_Chr3g0482791 RchiOBHm_Chr3g0482801 RchiOBHm_Chr4g0404671
rosa_laevigata	RLG00000023329 RLG00000023333 RLG00000026022
rosa_multiflora	Rmu_co8059324.1_g000001 Rmu_co8197734.1_g000001 Rmu_co8237749.1_g000001 Rmu_co8374597.1_g000001 Rmu_sc0014854.1_g000001 Rmu_sc0026287.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113600 Rroxscaffold_2G00131740 Rroxscaffold_3G00246900 Rroxscaffold_3G00264250 Rroxscaffold_4G00276480 Rroxscaffold_4G00310280 Rroxscaffold_5G00348850 Rroxscaffold_5G00354050 Rroxscaffold_6G00398930 Rroxscaffold_6G00398960 Rroxscaffold_7G00210840
rosa_rugosa	Rorug01G0450500 Rorug01G0450600 Rorug03G0198300 Rorug03G0198400 Rorug04G0048600
rosa_samantha	Rh1AG475100 Rh1BG433300 Rh1CG446500 Rh1CG446700 Rh1DG465800 Rh3AG249900 Rh3BG285100 Rh3BG285500 Rh3CG282800 Rh3CG283100 Rh3DG278600 Rh3DG278900 Rh4BG118500
rosa_wichuraiana	Rw1G039750 Rw3G022540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AccBSI	CCGCTC	1 cut(s)	112
AccII	CGCG	1 cut(s)	169
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	3 cut(s)	66, 254, 263
AcsI	RAATTY	1 cut(s)	190
AgsI	TTSAA	1 cut(s)	341
AluBI	AGCT	2 cut(s)	28, 43
AluI	AGCT	2 cut(s)	28, 43
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	3 cut(s)	66, 254, 263
Ama87I	CYCGRG	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	44
BanII	GRGCYC	2 cut(s)	81, 309
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	2 cut(s)	137, 371
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	323
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	78, 306
BmrI	ACTGGG	1 cut(s)	63
BmsI	GCATC	2 cut(s)	115, 319
BmuI	ACTGGG	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	323
BpuEI	CTTGAG	2 cut(s)	50, 170
BsaI	GGTCTC	1 cut(s)	41
Bse1I	ACTGG	3 cut(s)	58, 240, 306
Bse3DI	GCAATG	1 cut(s)	248
BseMI	GCAATG	1 cut(s)	248
BseNI	ACTGG	3 cut(s)	58, 240, 306
BseRI	GAGGAG	2 cut(s)	89, 375
BseXI	GCAGC	1 cut(s)	190
Bsh1236I	CGCG	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	41
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	2 cut(s)	81, 309
Bsp143I	GATC	4 cut(s)	58, 259, 268, 316
BspACI	CCGC	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	78, 306
BspPI	GGATC	3 cut(s)	66, 254, 263
BspTNI	GGTCTC	1 cut(s)	41
BsrBI	CCGCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	58, 240, 306
BssMI	GATC	4 cut(s)	58, 259, 268, 316
Bst6I	CTCTTC	1 cut(s)	131
BstFNI	CGCG	1 cut(s)	169
BstKTI	GATC	4 cut(s)	61, 262, 271, 319
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	4 cut(s)	58, 259, 268, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BtsIMutI	CAGTG	2 cut(s)	51, 81
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	7 cut(s)	28, 43, 79, 203, 227, 254, 307
CviKI_1	RGCY	7 cut(s)	28, 43, 79, 203, 227, 254, 307
DpnI	GATC	4 cut(s)	60, 261, 270, 318
DpnII	GATC	4 cut(s)	58, 259, 268, 316
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco24I	GRGCYC	2 cut(s)	81, 309
Eco31I	GGTCTC	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	44
EcoT38I	GRGCYC	2 cut(s)	81, 309
FaeI	CATG	1 cut(s)	176
FaiI	YATR	5 cut(s)	72, 174, 230, 258, 282
FatI	CATG	1 cut(s)	172
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	204
FriOI	GRGCYC	2 cut(s)	81, 309
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	1 cut(s)	323
GluI	GCNGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	323
Hin1II	CATG	1 cut(s)	176
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	2 cut(s)	86, 285
Hpy166II	GTNNAC	2 cut(s)	165, 277
Hpy188I	TCNGA	2 cut(s)	91, 156
Hpy188III	TCNNGA	6 cut(s)	46, 122, 133, 187, 293, 323
Hpy8I	GTNNAC	2 cut(s)	165, 277
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	2 cut(s)	28, 241
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
Hsp92II	CATG	1 cut(s)	176
Kzo9I	GATC	4 cut(s)	58, 259, 268, 316
LmnI	GCTCC	2 cut(s)	76, 304
LpnPI	CCDG	9 cut(s)	39, 135, 185, 208, 221, 278, 285, 287, 318
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	2 cut(s)	115, 319
MaeI	CTAG	1 cut(s)	323
MaeIII	GTNAC	3 cut(s)	7, 95, 209
MalI	GATC	4 cut(s)	60, 261, 270, 318
MbiI	CCGCTC	1 cut(s)	112
MboI	GATC	4 cut(s)	58, 259, 268, 316
MboII	GAAGA	3 cut(s)	148, 311, 338
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	2 cut(s)	81, 309
MluCI	AATT	3 cut(s)	64, 179, 190
MlyI	GAGTC	1 cut(s)	294
MnlI	CCTC	6 cut(s)	67, 132, 150, 169, 319, 353
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	238
NdeII	GATC	4 cut(s)	58, 259, 268, 316
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	2 cut(s)	78, 306
NmuCI	GTSAC	3 cut(s)	7, 95, 209
PaeR7I	CTCGAG	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	78, 306
PsuI	RGATCY	1 cut(s)	58
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	4 cut(s)	58, 259, 268, 316
SchI	GAGTC	1 cut(s)	294
SduI	GDGCHC	2 cut(s)	81, 309
SetI	ASST	2 cut(s)	30, 45
SfaNI	GCATC	2 cut(s)	115, 319
Sfr274I	CTCGAG	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	3 cut(s)	29, 44, 185
SmoI	CTYRAG	3 cut(s)	29, 44, 185
Sse9I	AATT	3 cut(s)	64, 179, 190
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	1 cut(s)	323
TaqI	TCGA	2 cut(s)	45, 358
TasI	AATT	3 cut(s)	64, 179, 190
TfiI	GAWTC	1 cut(s)	86
TscAI	CASTG	2 cut(s)	58, 88
TseFI	GTSAC	3 cut(s)	7, 95, 209
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	3 cut(s)	7, 95, 209
TspRI	CASTG	2 cut(s)	58, 88
XapI	RAATTY	1 cut(s)	190
XbaI	TCTAGA	1 cut(s)	322
XhoI	CTCGAG	1 cut(s)	44
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.