Rh4BG118500

Belongs to the universal ribosomal protein uS5 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
19878760 .. 19880100
1341 bp
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UTR
Exon/CDS
Intron
Rh4BG118500.1

Sequence Viewer

Length: 213 bp
ATGCGTCTCACACCATTGATAGAGAAGCTTGAGAAGGAAAAGCTCAAGACCACTGGGGATCCCAATTCCTATGAGGAGCCCACCGATTCTGGTAGCGACGATGACGACGAGTGGTTCAGTCCCGATGCCATCAAGAAGAGGGTTGATGAGTTTCAGAGGAAGTTCACGCGACACGAGGAATTGCTCAAGAATTTCAGACAGGCTGGTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

70

Amino Acids

8.26

Weight (kDa)

4.95

Isoelectric Point (pI)

29.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 169
AclWI GGATC 2 cut(s) 53, 66
AcsI RAATTY 1 cut(s) 190
AfaI GTAC 1 cut(s) 208
AluBI AGCT 2 cut(s) 28, 43
AluI AGCT 2 cut(s) 28, 43
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 2 cut(s) 53, 66
ApoI RAATTY 1 cut(s) 190
BamHI GGATCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 81
BauI CACGAG 1 cut(s) 173
BccI CCATC 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 11
BmiI GGNNCC 2 cut(s) 60, 78
BmrI ACTGGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 63
BpuEI CTTGAG 3 cut(s) 29, 50, 170
Bse1I ACTGG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 169
BslFI GGGAC 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 11
BsmBI CGTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 105
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 1 cut(s) 58
BspFNI CGCG 1 cut(s) 169
BspLI GGNNCC 2 cut(s) 60, 78
BspPI GGATC 2 cut(s) 53, 66
BsrI ACTGG 1 cut(s) 58
BssMI GATC 1 cut(s) 58
BssSI CACGAG 1 cut(s) 173
Bst2BI CACGAG 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 131
BstFNI CGCG 1 cut(s) 169
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 1 cut(s) 58
BstUI CGCG 1 cut(s) 169
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 51
Csp6I GTAC 1 cut(s) 207
CviJI RGCY 4 cut(s) 28, 43, 79, 203
CviKI_1 RGCY 4 cut(s) 28, 43, 79, 203
CviQI GTAC 1 cut(s) 207
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 11
FaiI YATR 2 cut(s) 72, 211
FaqI GGGAC 1 cut(s) 105
FriOI GRGCYC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 2 cut(s) 156, 197
Hpy188III TCNNGA 4 cut(s) 46, 122, 133, 187
Hpy8I GTNNAC 1 cut(s) 165
Hpy99I CGWCG 2 cut(s) 101, 110
HpyAV CCTTC 1 cut(s) 28
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 4 cut(s) 39, 75, 185, 189
LweI GCATC 1 cut(s) 115
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MboII GAAGA 1 cut(s) 148
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 3 cut(s) 64, 179, 190
MnlI CCTC 4 cut(s) 67, 132, 150, 169
MvnI CGCG 1 cut(s) 169
NdeII GATC 1 cut(s) 58
NlaIV GGNNCC 2 cut(s) 60, 78
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfeI GAWTC 1 cut(s) 86
PspN4I GGNNCC 2 cut(s) 60, 78
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
Sau3AI GATC 1 cut(s) 58
SduI GDGCHC 1 cut(s) 81
SetI ASST 2 cut(s) 30, 45
SfaNI GCATC 1 cut(s) 115
SmlI CTYRAG 3 cut(s) 29, 44, 185
SmoI CTYRAG 3 cut(s) 29, 44, 185
Sse9I AATT 3 cut(s) 64, 179, 190
TasI AATT 3 cut(s) 64, 179, 190
TfiI GAWTC 1 cut(s) 86
TscAI CASTG 1 cut(s) 58
TspRI CASTG 1 cut(s) 58
XapI RAATTY 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.