Rh3DG278900

Belongs to the universal ribosomal protein uS5 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001359
Physical Location & Seq
Forward (+)
28284606 .. 28289043
4438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG278900.1

Sequence Viewer

Length: 1086 bp
ATGCGTGTCACACCATTGATAGAGAAGCTTGAGAAGGAGAAGCTCAAGACCACTGGGGATCTCAATTCCTATGAGGAGCCCACCGATTCTGATAGTGACGATGACGACGAGCGGTTCAGTCCCGATGCCATCAAGAAGAGGGTTGATGAGTTTCAGAGGAAGTTCATGCGACATGAGGAATTGCTCAAGAATTTCACACAGGCTGAGACGCTTGATGATGCTTTTAAATGGATGAATAAAATTGACAAGTTTGAGCAAAAACATTTTTGGCTTTGCCCTGAATATAGAGTCATTGTTGAATTGATGAACCCTCTAAAAGTAGCTGAGGGCAAGGATAAATTCATTCTGCAGCACAAACTAAACAGGGCTATGCGACTGGTGCAATGGAAGGAAGCCTATGATCCAAATGATACTGCCAACTATGGAGTCATTCAGGAACAACTGGAGCCCTCATTTGATCTTCTAGAAGATGCTGGATTTGAAAGAGAGAAAAAATCATTCGAGGAGTTGATGATGATGATGATGGATGAAGAATTCAATGACATGAAGGAGAAAGATGATATACTGTTAGAGAAGCTAAAATTTATCAACAAGAAACTAGAAGAGAAGCTAGCAGAGTTGGATCATACTTTTGGAAAGAAGGGAAAGGTTCTAGAGGAAGAGATCAGAGATCTAGCAGAGGAAAGAAATGGTTTGACGGAGAAGAAGAGAAGACCTCTTTATAAGAAAGGATTCGATGTTAGATTTATTGATGTGAACCGGACTTGTAAAGTTACAAAGGGAGGGCAAGTGGTCAAATACACTGCTATATTAGTTTCTGGGAACTATCATGGTGTTGTTGGTTATGCTAAAGCAAAAGGTGTTTCTCTGGCCTGCACCACTAGGACGGGTATGAAAGCGGGAAGAACTGTCGAAACCATTCTAAACTTGGCTGGTTTCAATAATGTCAAGTCTAAGGTTGTTGGTTCAAGGAGTCCTCATAATACAGTGAAGGCTGTTTTCAAAACCCTTACTGTGATTAAAACTTCCAAGGATGTTCAAGAAAACTTTGGGCGCACTGTTGTTGAGAAGTACCTTCTATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

361

Amino Acids

41.92

Weight (kDa)

7.63

Isoelectric Point (pI)

31.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S5 PF00333 245 - 299 1.6e-10 Ribosomal protein S5, N-terminal domain
Ribosomal_S5_C PF03719 295 - 348 9.4e-14 Ribosomal protein S5, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 723
AccBSI CCGCTC 1 cut(s) 112
AciI CCGC 2 cut(s) 112, 899
AclWI GGATC 3 cut(s) 66, 395, 630
AcsI RAATTY 4 cut(s) 190, 338, 533, 581
AfaI GTAC 1 cut(s) 1073
AgsI TTSAA 7 cut(s) 299, 482, 538, 940, 969, 1003, 1040
AluBI AGCT 5 cut(s) 28, 43, 323, 577, 610
AluI AGCT 5 cut(s) 28, 43, 323, 577, 610
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 3 cut(s) 66, 395, 630
AoxI GGCC 1 cut(s) 870
ApeKI GCWGC 1 cut(s) 349
ApoI RAATTY 4 cut(s) 190, 338, 533, 581
Asp700I GAANNNNTTC 2 cut(s) 731, 918
AspLEI GCGC 1 cut(s) 1056
AsuNHI GCTAGC 1 cut(s) 610
BanII GRGCYC 2 cut(s) 81, 450
BbsI GAAGAC 1 cut(s) 718
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 361
BccI CCATC 2 cut(s) 137, 517
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 6 cut(s) 464, 599, 611, 653, 674, 882
BfmI CTRYAG 1 cut(s) 347
BglII AGATCT 1 cut(s) 670
BisI GCNGC 1 cut(s) 350
BlsI GCNGC 1 cut(s) 351
BmiI GGNNCC 2 cut(s) 78, 447
BmrI ACTGGG 1 cut(s) 63
BmsI GCATC 3 cut(s) 115, 208, 460
BmtI GCTAGC 1 cut(s) 614
BmuI ACTGGG 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 718
BplI GAGNNNNNCTC 2 cut(s) 700, 732
BpmI CTGGAG 1 cut(s) 464
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 3 cut(s) 29, 50, 170
BsaJI CCNNGG 1 cut(s) 1029
BsaWI WCCGGW 1 cut(s) 759
BsaXI ACNNNNNCTCC 2 cut(s) 774, 804
Bse1I ACTGG 3 cut(s) 58, 381, 447
Bse3DI GCAATG 1 cut(s) 389
BseDI CCNNGG 1 cut(s) 1029
BseGI GGATG 3 cut(s) 237, 532, 1039
BseMI GCAATG 1 cut(s) 389
BseMII CTCAG 2 cut(s) 195, 315
BseNI ACTGG 3 cut(s) 58, 381, 447
BseRI GAGGAG 2 cut(s) 89, 518
BseXI GCAGC 1 cut(s) 361
BsgI GTGCAG 1 cut(s) 859
BshFI GGCC 1 cut(s) 872
BsiSI CCGG 1 cut(s) 760
BslFI GGGAC 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 200
BsmBI CGTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 105
BsnI GGCC 1 cut(s) 872
Bsp1286I GDGCHC 2 cut(s) 81, 450
Bsp143I GATC 6 cut(s) 58, 400, 457, 622, 663, 670
BspACI CCGC 2 cut(s) 112, 899
BspANI GGCC 1 cut(s) 872
BspCNI CTCAG 2 cut(s) 196, 316
BspLI GGNNCC 2 cut(s) 78, 447
BspMAI CTGCAG 1 cut(s) 351
BspOI GCTAGC 1 cut(s) 614
BspPI GGATC 3 cut(s) 66, 395, 630
BsrBI CCGCTC 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 389
BsrI ACTGG 3 cut(s) 58, 381, 447
BssECI CCNNGG 1 cut(s) 1029
BssMI GATC 6 cut(s) 58, 400, 457, 622, 663, 670
BssT1I CCWWGG 1 cut(s) 1029
Bst4CI ACNGT 5 cut(s) 567, 910, 988, 1015, 1060
Bst6I CTCTTC 4 cut(s) 131, 597, 654, 701
BstC8I GCNNGC 2 cut(s) 612, 874
BstDEI CTNAG 3 cut(s) 204, 324, 954
BstF5I GGATG 3 cut(s) 237, 532, 1039
BstHHI GCGC 1 cut(s) 1056
BstKTI GATC 6 cut(s) 61, 403, 460, 625, 666, 673
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 6 cut(s) 58, 400, 457, 622, 663, 670
BstMWI GCNNNNNNNGC 1 cut(s) 379
BstSFI CTRYAG 1 cut(s) 347
BstV1I GCAGC 1 cut(s) 361
BstV2I GAAGAC 1 cut(s) 718
BstX2I RGATCY 2 cut(s) 58, 670
BstYI RGATCY 2 cut(s) 58, 670
BsuRI GGCC 1 cut(s) 872
BtsCI GGATG 3 cut(s) 237, 532, 1039
BtsI GCAGTG 1 cut(s) 801
BtsIMutI CAGTG 4 cut(s) 51, 801, 993, 1056
Cac8I GCNNGC 2 cut(s) 612, 874
CfoI GCGC 1 cut(s) 1056
CseI GACGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 1072
CviAII CATG 4 cut(s) 166, 173, 544, 830
CviQI GTAC 1 cut(s) 1072
DdeI CTNAG 3 cut(s) 204, 324, 954
DpnI GATC 6 cut(s) 60, 402, 459, 624, 665, 672
DpnII GATC 6 cut(s) 58, 400, 457, 622, 663, 670
DraI TTTAAA 1 cut(s) 226
Eam1104I CTCTTC 4 cut(s) 131, 597, 654, 701
EarI CTCTTC 4 cut(s) 131, 597, 654, 701
Eco130I CCWWGG 1 cut(s) 1029
Eco24I GRGCYC 2 cut(s) 81, 450
EcoRI GAATTC 1 cut(s) 533
EcoT14I CCWWGG 1 cut(s) 1029
EcoT38I GRGCYC 2 cut(s) 81, 450
ErhI CCWWGG 1 cut(s) 1029
Esp3I CGTCTC 1 cut(s) 200
FaeI CATG 4 cut(s) 169, 176, 547, 833
FaqI GGGAC 1 cut(s) 105
FatI CATG 4 cut(s) 165, 172, 543, 829
FauI CCCGC 1 cut(s) 892
Fnu4HI GCNGC 1 cut(s) 350
FokI GGATG 3 cut(s) 244, 539, 1046
FriOI GRGCYC 2 cut(s) 81, 450
Fsp4HI GCNGC 1 cut(s) 350
FspBI CTAG 6 cut(s) 464, 599, 611, 653, 674, 882
GlaI GCGC 1 cut(s) 1055
GluI GCNGC 1 cut(s) 350
GsuI CTGGAG 1 cut(s) 464
HaeIII GGCC 1 cut(s) 872
HapII CCGG 1 cut(s) 760
HgaI GACGC 1 cut(s) 217
HhaI GCGC 1 cut(s) 1056
Hin1II CATG 4 cut(s) 169, 176, 547, 833
Hin6I GCGC 1 cut(s) 1054
HinP1I GCGC 1 cut(s) 1054
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 5 cut(s) 86, 288, 426, 732, 973
HpaII CCGG 1 cut(s) 760
Hpy166II GTNNAC 1 cut(s) 757
Hpy188I TCNGA 3 cut(s) 91, 156, 668
Hpy188III TCNNGA 8 cut(s) 46, 122, 133, 187, 434, 464, 653, 1040
Hpy8I GTNNAC 1 cut(s) 757
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 6 cut(s) 28, 382, 541, 634, 985, 1085
HpyCH4III ACNGT 5 cut(s) 567, 910, 988, 1015, 1060
HpyCH4V TGCA 3 cut(s) 349, 382, 876
HpyF10VI GCNNNNNNNGC 1 cut(s) 379
HpyF3I CTNAG 3 cut(s) 204, 324, 954
Hsp92II CATG 4 cut(s) 169, 176, 547, 833
HspAI GCGC 1 cut(s) 1054
Kzo9I GATC 6 cut(s) 58, 400, 457, 622, 663, 670
LmnI GCTCC 2 cut(s) 76, 445
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 3 cut(s) 115, 208, 460
MaeI CTAG 6 cut(s) 464, 599, 611, 653, 674, 882
MaeIII GTNAC 3 cut(s) 7, 95, 772
MalI GATC 6 cut(s) 60, 402, 459, 624, 665, 672
MbiI CCGCTC 1 cut(s) 112
MboI GATC 6 cut(s) 58, 400, 457, 622, 663, 670
MflI RGATCY 2 cut(s) 58, 670
MhlI GDGCHC 2 cut(s) 81, 450
MluCI AATT 8 cut(s) 64, 179, 190, 240, 299, 338, 533, 581
MlyI GAGTC 3 cut(s) 297, 435, 982
MmeI TCCRAC 1 cut(s) 600
MroXI GAANNNNTTC 2 cut(s) 731, 918
MseI TTAA 2 cut(s) 225, 1020
MspI CCGG 1 cut(s) 760
MwoI GCNNNNNNNGC 1 cut(s) 379
NdeII GATC 6 cut(s) 58, 400, 457, 622, 663, 670
NheI GCTAGC 1 cut(s) 610
NlaIII CATG 4 cut(s) 169, 176, 547, 833
NlaIV GGNNCC 2 cut(s) 78, 447
NmuCI GTSAC 2 cut(s) 7, 95
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PdmI GAANNNNTTC 2 cut(s) 731, 918
PfeI GAWTC 2 cut(s) 86, 732
PkrI GCNGC 1 cut(s) 351
PleI GAGTC 3 cut(s) 296, 434, 981
PpsI GAGTC 3 cut(s) 296, 434, 981
PsiI TTATAA 1 cut(s) 723
PspN4I GGNNCC 2 cut(s) 78, 447
PstI CTGCAG 1 cut(s) 351
PsuI RGATCY 2 cut(s) 58, 670
RsaI GTAC 1 cut(s) 1073
RsaNI GTAC 1 cut(s) 1072
SaqAI TTAA 2 cut(s) 225, 1020
SatI GCNGC 1 cut(s) 350
Sau3AI GATC 6 cut(s) 58, 400, 457, 622, 663, 670
SchI GAGTC 3 cut(s) 297, 435, 982
SduI GDGCHC 2 cut(s) 81, 450
SfaNI GCATC 3 cut(s) 115, 208, 460
SfcI CTRYAG 1 cut(s) 347
SmlI CTYRAG 3 cut(s) 29, 44, 185
SmoI CTYRAG 3 cut(s) 29, 44, 185
Sse9I AATT 8 cut(s) 64, 179, 190, 240, 299, 338, 533, 581
SsiI CCGC 2 cut(s) 112, 899
SspMI CTAG 6 cut(s) 464, 599, 611, 653, 674, 882
StyI CCWWGG 1 cut(s) 1029
TaaI ACNGT 5 cut(s) 567, 910, 988, 1015, 1060
TaqI TCGA 3 cut(s) 501, 735, 912
TasI AATT 8 cut(s) 64, 179, 190, 240, 299, 338, 533, 581
TfiI GAWTC 2 cut(s) 86, 732
Tru1I TTAA 2 cut(s) 225, 1020
Tru9I TTAA 2 cut(s) 225, 1020
TscAI CASTG 4 cut(s) 58, 808, 993, 1063
TseFI GTSAC 2 cut(s) 7, 95
TseI GCWGC 1 cut(s) 349
Tsp45I GTSAC 2 cut(s) 7, 95
TspDTI ATGAA 7 cut(s) 154, 248, 320, 331, 543, 560, 908
TspGWI ACGGA 1 cut(s) 713
TspRI CASTG 4 cut(s) 58, 808, 993, 1063
XapI RAATTY 4 cut(s) 190, 338, 533, 581
XbaI TCTAGA 2 cut(s) 463, 652
XcmI CCANNNNNNNNNTGG 1 cut(s) 925
XmnI GAANNNNTTC 2 cut(s) 731, 918
XspI CTAG 6 cut(s) 464, 599, 611, 653, 674, 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.