RchiOBHm_Chr4g0404671

Belongs to the universal ribosomal protein uS5 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
24511965 .. 24512927
963 bp
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UTR
Exon/CDS
Intron
PRQ37621

Sequence Viewer

Length: 228 bp
ATGCTTGAAAAGGAGCCCACCGATTCTGGTAGCGACGATGACGACGAGTGGTTCAGTCCCGATGCCATCAGGAAGAGGGTTGATGAGTTTCAGAGGAAGTTCACGCGACACGAGGAATTGCTCAAGAATTTCACACAGGCTGGATTCATCTTCTTCTGTTTCAGATTCCATCTAAATGAAATTTTAGAAACAATGCAACATAGACAATTGGAAATGCTGAAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

9.18

Weight (kDa)

5.08

Isoelectric Point (pI)

27.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 106
AcsI RAATTY 2 cut(s) 127, 180
AgsI TTSAA 1 cut(s) 8
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
ApoI RAATTY 2 cut(s) 127, 180
BanII GRGCYC 1 cut(s) 18
BauI CACGAG 1 cut(s) 110
BccI CCATC 2 cut(s) 74, 177
BmiI GGNNCC 1 cut(s) 15
BmsI GCATC 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 107
Bsh1236I CGCG 1 cut(s) 106
BslFI GGGAC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 18
BspFNI CGCG 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 15
BssSI CACGAG 1 cut(s) 110
Bst2BI CACGAG 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 68
BstFNI CGCG 1 cut(s) 106
BstUI CGCG 1 cut(s) 106
CviJI RGCY 3 cut(s) 16, 140, 223
CviKI_1 RGCY 3 cut(s) 16, 140, 223
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco24I GRGCYC 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 18
FaiI YATR 1 cut(s) 201
FaqI GGGAC 1 cut(s) 42
FriOI GRGCYC 1 cut(s) 18
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 3 cut(s) 23, 144, 165
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 2 cut(s) 93, 164
Hpy188III TCNNGA 3 cut(s) 59, 70, 124
Hpy8I GTNNAC 1 cut(s) 102
Hpy99I CGWCG 2 cut(s) 38, 47
HpyCH4V TGCA 1 cut(s) 196
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 4 cut(s) 12, 55, 122, 126
LweI GCATC 1 cut(s) 52
MboII GAAGA 3 cut(s) 85, 142, 145
MfeI CAATTG 1 cut(s) 206
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 4 cut(s) 116, 127, 180, 206
MnlI CCTC 3 cut(s) 69, 87, 106
MseI TTAA 1 cut(s) 226
MslI CAYNNNNRTG 1 cut(s) 174
MunI CAATTG 1 cut(s) 206
MvnI CGCG 1 cut(s) 106
NlaIV GGNNCC 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 3 cut(s) 23, 144, 165
PspN4I GGNNCC 1 cut(s) 15
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 1 cut(s) 226
SduI GDGCHC 1 cut(s) 18
SetI ASST 1 cut(s) 225
SfaNI GCATC 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 4 cut(s) 116, 127, 180, 206
TasI AATT 4 cut(s) 116, 127, 180, 206
TfiI GAWTC 3 cut(s) 23, 144, 165
Tru1I TTAA 1 cut(s) 226
Tru9I TTAA 1 cut(s) 226
TspDTI ATGAA 2 cut(s) 136, 192
XapI RAATTY 2 cut(s) 127, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.