Rh3BG285100

Belongs to the universal ribosomal protein uS5 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001359
Physical Location & Seq
Forward (+)
28381770 .. 28387277
5508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG285100.1

Sequence Viewer

Length: 678 bp
ATGTCATATCAATCGAGTACGGCTGTGGTCGTTTTTCATCATCCTCTGAGTTTCTCGGAGCGATCGCCGCAGGCGCAGTCTTATACCGCGGCCTTGGTTTTGCCAATCCAATCGGCTTTCGGTGGGAGATCTCTTCCTATTGTGCTTTGCCGGGAGGAGTTTCAGGTCAGATCCATATTTGAAGTTGGTCGTTTACGACCCAAACGTGGGCGACTAAAGCCGGTGTTAGGCGGCTGCATCACCGAGGTGGTAAAGGGCGAGGGTGACCCCGTATGGAGCGAGACGGCGACTGAGTCTTCTCCGGTGAAGCTCCTGAATTCGACCCATTACTATTCCACGGTATCAGACAGAGTAGTCCACGACATTCTGGCCGAGGTCGAGAGAGAAAGGCACAGAGAAAGAGAGCAGAGGAAAAGGGCTGGTCTCGACACCAAAGACATTGACCAAGAAGATGAGGAGGACTACATGCGTGTCACACCATTGATAGAGAAGCTTGAGAAGGAGAAGCTCAAGACCACTGGGGATCTCAATTCCTATGAGGAGCCCTCCGATTCTGATAGTGACGATGACGACGAGCGGGTCAGTCCCGATGCCATCAAGAAGAGGGTTGATGAGTTTCAGAGGAAGTTCACGCGACATGAGGAGTTGCTCAAGAATTTCACACAGGCTGGTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

225

Amino Acids

25.73

Weight (kDa)

5.4

Isoelectric Point (pI)

58.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 353, 578
AccBSI CCGCTC 1 cut(s) 577
AccII CGCG 2 cut(s) 89, 634
AciI CCGC 5 cut(s) 68, 87, 89, 231, 577
AclWI GGATC 2 cut(s) 165, 531
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 2 cut(s) 316, 655
AfaI GTAC 2 cut(s) 19, 673
AfiI CCNNNNNNNGG 3 cut(s) 206, 207, 227
AgsI TTSAA 1 cut(s) 182
AleI CACNNNNGTG 1 cut(s) 245
AluBI AGCT 3 cut(s) 310, 493, 508
AluI AGCT 3 cut(s) 310, 493, 508
Alw26I GTCTC 2 cut(s) 275, 428
AlwI GGATC 2 cut(s) 165, 531
AoxI GGCC 2 cut(s) 90, 369
ApeKI GCWGC 1 cut(s) 234
ApoI RAATTY 2 cut(s) 316, 655
AsiSI GCGATCGC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 76
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 3 cut(s) 232, 275, 316
BanII GRGCYC 1 cut(s) 546
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 602
BceAI ACGGC 2 cut(s) 36, 300
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 275, 428
BglII AGATCT 1 cut(s) 128
BisI GCNGC 4 cut(s) 68, 90, 232, 235
BlsI GCNGC 4 cut(s) 69, 91, 233, 236
Bme1390I CCNGG 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 543
BmrFI CCNGG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 528
BmsI GCATC 2 cut(s) 246, 580
BmuI ACTGGG 1 cut(s) 528
BpiI GAAGAC 1 cut(s) 288
BplI GAGNNNNNCTC 2 cut(s) 530, 562
BpuEI CTTGAG 3 cut(s) 494, 515, 635
BpuMI CCSGG 1 cut(s) 152
BsaI GGTCTC 1 cut(s) 428
BsaJI CCNNGG 5 cut(s) 87, 93, 243, 336, 372
BsaWI WCCGGW 1 cut(s) 301
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 207, 227
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 523
BseDI CCNNGG 5 cut(s) 87, 93, 243, 336, 372
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 3 cut(s) 206, 207, 227
BseMII CTCAG 2 cut(s) 38, 282
BseNI ACTGG 1 cut(s) 523
BseRI GAGGAG 4 cut(s) 170, 470, 554, 656
BseXI GCAGC 1 cut(s) 221
Bsh1236I CGCG 2 cut(s) 89, 634
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 2 cut(s) 92, 371
BsiEI CGRYCG 1 cut(s) 65
BsiSI CCGG 3 cut(s) 151, 221, 302
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 3 cut(s) 206, 207, 227
BsmAI GTCTC 2 cut(s) 275, 428
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 570
BsnI GGCC 2 cut(s) 92, 371
Bso31I GGTCTC 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 546
Bsp143I GATC 4 cut(s) 62, 128, 170, 523
BspACI CCGC 5 cut(s) 68, 87, 89, 231, 577
BspANI GGCC 2 cut(s) 92, 371
BspCNI CTCAG 2 cut(s) 39, 283
BspFNI CGCG 2 cut(s) 89, 634
BspLI GGNNCC 1 cut(s) 543
BspPI GGATC 2 cut(s) 165, 531
BspTNI GGTCTC 1 cut(s) 428
BsrBI CCGCTC 1 cut(s) 577
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 1 cut(s) 523
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 5 cut(s) 87, 93, 243, 336, 372
BssMI GATC 4 cut(s) 62, 128, 170, 523
BssT1I CCWWGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 340
Bst6I CTCTTC 2 cut(s) 138, 596
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 47, 291
BstDSI CCRYGG 2 cut(s) 87, 336
BstEII GGTNACC 1 cut(s) 263
BstF5I GGATG 1 cut(s) 40
BstFNI CGCG 2 cut(s) 89, 634
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 4 cut(s) 65, 131, 173, 526
BstMAI GTCTC 2 cut(s) 275, 428
BstMBI GATC 4 cut(s) 62, 128, 170, 523
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 3 cut(s) 67, 73, 217
BstNSI RCATGY 1 cut(s) 469
BstPI GGTNACC 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 150
BstUI CGCG 2 cut(s) 89, 634
BstV1I GCAGC 1 cut(s) 221
BstV2I GAAGAC 1 cut(s) 288
BstX2I RGATCY 3 cut(s) 128, 170, 523
BstYI RGATCY 3 cut(s) 128, 170, 523
BsuRI GGCC 2 cut(s) 92, 371
BtgI CCRYGG 2 cut(s) 87, 336
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 516
Cac8I GCNNGC 1 cut(s) 72
CfoI GCGC 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 220
Cfr42I CCGCGG 1 cut(s) 90
Csp6I GTAC 2 cut(s) 18, 672
CviAII CATG 2 cut(s) 466, 638
CviQI GTAC 2 cut(s) 18, 672
DdeI CTNAG 2 cut(s) 47, 291
DpnI GATC 4 cut(s) 64, 130, 172, 525
DpnII GATC 4 cut(s) 62, 128, 170, 523
DrdI GACNNNNNNGTC 2 cut(s) 353, 578
DseDI GACNNNNNNGTC 2 cut(s) 353, 578
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 2 cut(s) 138, 596
EarI CTCTTC 2 cut(s) 138, 596
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 546
Eco31I GGTCTC 1 cut(s) 428
Eco91I GGTNACC 1 cut(s) 263
EcoO65I GGTNACC 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 546
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 2 cut(s) 469, 641
FaiI YATR 8 cut(s) 7, 84, 176, 274, 467, 537, 639, 676
FaqI GGGAC 1 cut(s) 570
FatI CATG 2 cut(s) 465, 637
FauI CCCGC 1 cut(s) 570
Fnu4HI GCNGC 4 cut(s) 68, 90, 232, 235
FokI GGATG 1 cut(s) 27
FriOI GRGCYC 1 cut(s) 546
Fsp4HI GCNGC 4 cut(s) 68, 90, 232, 235
GlaI GCGC 1 cut(s) 75
GluI GCNGC 4 cut(s) 68, 90, 232, 235
HaeIII GGCC 2 cut(s) 92, 371
HapII CCGG 3 cut(s) 151, 221, 302
HhaI GCGC 1 cut(s) 76
Hin1II CATG 2 cut(s) 469, 641
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 2 cut(s) 293, 551
HpaII CCGG 3 cut(s) 151, 221, 302
HphI GGTGA 3 cut(s) 232, 275, 316
Hpy166II GTNNAC 3 cut(s) 194, 358, 630
Hpy188I TCNGA 7 cut(s) 48, 58, 170, 346, 550, 556, 621
Hpy188III TCNNGA 7 cut(s) 313, 379, 425, 511, 587, 598, 652
Hpy8I GTNNAC 3 cut(s) 194, 358, 630
Hpy99I CGWCG 1 cut(s) 575
HpyAV CCTTC 1 cut(s) 493
HpyCH4III ACNGT 1 cut(s) 340
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 237
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 73, 217
HpyF3I CTNAG 2 cut(s) 47, 291
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 2 cut(s) 469, 641
HspAI GCGC 1 cut(s) 74
KspI CCGCGG 1 cut(s) 90
Kzo9I GATC 4 cut(s) 62, 128, 170, 523
LmnI GCTCC 4 cut(s) 58, 276, 315, 541
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 2 cut(s) 246, 580
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 3 cut(s) 263, 472, 560
MalI GATC 4 cut(s) 64, 130, 172, 525
MbiI CCGCTC 1 cut(s) 577
MboI GATC 4 cut(s) 62, 128, 170, 523
MboII GAAGA 4 cut(s) 125, 288, 461, 613
MflI RGATCY 3 cut(s) 128, 170, 523
MhlI GDGCHC 1 cut(s) 546
MluCI AATT 3 cut(s) 316, 529, 655
MlyI GAGTC 1 cut(s) 302
MslI CAYNNNNRTG 1 cut(s) 245
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 3 cut(s) 151, 221, 302
MspR9I CCNGG 1 cut(s) 152
MvnI CGCG 2 cut(s) 89, 634
MwoI GCNNNNNNNGC 3 cut(s) 67, 73, 217
NciI CCSGG 1 cut(s) 152
NdeII GATC 4 cut(s) 62, 128, 170, 523
NlaIII CATG 2 cut(s) 469, 641
NlaIV GGNNCC 1 cut(s) 543
NmeAIII GCCGAG 1 cut(s) 397
NmuCI GTSAC 3 cut(s) 263, 472, 560
NspI RCATGY 1 cut(s) 469
OliI CACNNNNGTG 1 cut(s) 245
PcsI WCGNNNNNNNCGW 2 cut(s) 202, 570
PfeI GAWTC 1 cut(s) 551
PflFI GACNNNGTC 1 cut(s) 292
PkrI GCNGC 4 cut(s) 69, 91, 233, 236
Ple19I CGATCG 1 cut(s) 65
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PspEI GGTNACC 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 543
PsuI RGATCY 3 cut(s) 128, 170, 523
PsyI GACNNNGTC 1 cut(s) 292
PvuI CGATCG 1 cut(s) 65
RgaI GCGATCGC 1 cut(s) 65
RsaI GTAC 2 cut(s) 19, 673
RsaNI GTAC 2 cut(s) 18, 672
RseI CAYNNNNRTG 1 cut(s) 245
SacII CCGCGG 1 cut(s) 90
SatI GCNGC 4 cut(s) 68, 90, 232, 235
Sau3AI GATC 4 cut(s) 62, 128, 170, 523
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 546
SetI ASST 7 cut(s) 168, 208, 249, 312, 378, 495, 510
SfaAI GCGATCGC 1 cut(s) 65
SfaNI GCATC 2 cut(s) 246, 580
Sfr303I CCGCGG 1 cut(s) 90
SgfI GCGATCGC 1 cut(s) 65
SgrBI CCGCGG 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 245
SmlI CTYRAG 3 cut(s) 494, 509, 650
SmoI CTYRAG 3 cut(s) 494, 509, 650
Sse9I AATT 3 cut(s) 316, 529, 655
SsiI CCGC 5 cut(s) 68, 87, 89, 231, 577
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 340
TaiI ACGT 1 cut(s) 208
TaqI TCGA 4 cut(s) 14, 320, 378, 426
TasI AATT 3 cut(s) 316, 529, 655
TauI GCSGC 3 cut(s) 70, 92, 234
TfiI GAWTC 1 cut(s) 551
TscAI CASTG 1 cut(s) 523
TseFI GTSAC 3 cut(s) 263, 472, 560
TseI GCWGC 1 cut(s) 234
Tsp45I GTSAC 3 cut(s) 263, 472, 560
TspDTI ATGAA 1 cut(s) 26
TspRI CASTG 1 cut(s) 523
Tth111I GACNNNGTC 1 cut(s) 292
XapI RAATTY 2 cut(s) 316, 655
XceI RCATGY 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.