Belongs to the universal ribosomal protein uS5 family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ribosomal_S5 | PF00333 | 74 - 117 | 6.8e-12 | Ribosomal protein S5, N-terminal domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 210 |
| AclWI | GGATC | 1 cut(s) | 117 |
| AcsI | RAATTY | 2 cut(s) | 20, 68 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 370 |
| AgsI | TTSAA | 1 cut(s) | 25 |
| AluBI | AGCT | 2 cut(s) | 64, 97 |
| AluI | AGCT | 2 cut(s) | 64, 97 |
| AlwI | GGATC | 1 cut(s) | 117 |
| ApoI | RAATTY | 2 cut(s) | 20, 68 |
| AseI | ATTAAT | 1 cut(s) | 233 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 218 |
| AspS9I | GGNCC | 1 cut(s) | 347 |
| AsuNHI | GCTAGC | 1 cut(s) | 97 |
| AvaII | GGWCC | 1 cut(s) | 347 |
| BbsI | GAAGAC | 1 cut(s) | 205 |
| BccI | CCATC | 1 cut(s) | 4 |
| BfaI | CTAG | 4 cut(s) | 86, 98, 140, 161 |
| BglII | AGATCT | 1 cut(s) | 157 |
| Bme18I | GGWCC | 1 cut(s) | 347 |
| BmgT120I | GGNCC | 1 cut(s) | 347 |
| BmtI | GCTAGC | 1 cut(s) | 101 |
| BpiI | GAAGAC | 1 cut(s) | 205 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 187, 219 |
| BpmI | CTGGAG | 1 cut(s) | 350 |
| BsaWI | WCCGGW | 1 cut(s) | 246 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 261, 291 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 370 |
| Bse1I | ACTGG | 1 cut(s) | 350 |
| BseGI | GGATG | 1 cut(s) | 19 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 370 |
| BseNI | ACTGG | 1 cut(s) | 350 |
| BsiSI | CCGG | 1 cut(s) | 247 |
| BslFI | GGGAC | 1 cut(s) | 338 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 370 |
| BsmFI | GGGAC | 1 cut(s) | 338 |
| Bsp143I | GATC | 3 cut(s) | 109, 150, 157 |
| BspOI | GCTAGC | 1 cut(s) | 101 |
| BspPI | GGATC | 1 cut(s) | 117 |
| BsrI | ACTGG | 1 cut(s) | 350 |
| BssMI | GATC | 3 cut(s) | 109, 150, 157 |
| Bst4CI | ACNGT | 1 cut(s) | 54 |
| Bst6I | CTCTTC | 3 cut(s) | 84, 141, 188 |
| BstC8I | GCNNGC | 1 cut(s) | 99 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 368 |
| BstF5I | GGATG | 1 cut(s) | 19 |
| BstKTI | GATC | 3 cut(s) | 112, 153, 160 |
| BstMBI | GATC | 3 cut(s) | 109, 150, 157 |
| BstV2I | GAAGAC | 1 cut(s) | 205 |
| BstX2I | RGATCY | 1 cut(s) | 157 |
| BstYI | RGATCY | 1 cut(s) | 157 |
| BtsCI | GGATG | 1 cut(s) | 19 |
| BtsI | GCAGTG | 1 cut(s) | 288 |
| BtsIMutI | CAGTG | 1 cut(s) | 288 |
| Cac8I | GCNNGC | 1 cut(s) | 99 |
| Cfr13I | GGNCC | 1 cut(s) | 347 |
| CviAII | CATG | 2 cut(s) | 31, 317 |
| CviJI | RGCY | 2 cut(s) | 64, 97 |
| CviKI_1 | RGCY | 2 cut(s) | 64, 97 |
| DpnI | GATC | 3 cut(s) | 111, 152, 159 |
| DpnII | GATC | 3 cut(s) | 109, 150, 157 |
| Eam1104I | CTCTTC | 3 cut(s) | 84, 141, 188 |
| EarI | CTCTTC | 3 cut(s) | 84, 141, 188 |
| Eco47I | GGWCC | 1 cut(s) | 347 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 368 |
| EcoRI | GAATTC | 1 cut(s) | 20 |
| FaeI | CATG | 2 cut(s) | 34, 320 |
| FaiI | YATR | 8 cut(s) | 32, 50, 114, 210, 296, 318, 333, 378 |
| FaqI | GGGAC | 1 cut(s) | 338 |
| FatI | CATG | 2 cut(s) | 30, 316 |
| FokI | GGATG | 1 cut(s) | 26 |
| FspBI | CTAG | 4 cut(s) | 86, 98, 140, 161 |
| GsuI | CTGGAG | 1 cut(s) | 350 |
| HapII | CCGG | 1 cut(s) | 247 |
| Hin1II | CATG | 2 cut(s) | 34, 320 |
| HinfI | GANTC | 1 cut(s) | 219 |
| HpaII | CCGG | 1 cut(s) | 247 |
| Hpy166II | GTNNAC | 1 cut(s) | 244 |
| Hpy188I | TCNGA | 1 cut(s) | 155 |
| Hpy188III | TCNNGA | 2 cut(s) | 140, 367 |
| Hpy8I | GTNNAC | 1 cut(s) | 244 |
| HpyAV | CCTTC | 3 cut(s) | 28, 121, 364 |
| HpyCH4III | ACNGT | 1 cut(s) | 54 |
| Hsp92II | CATG | 2 cut(s) | 34, 320 |
| Kzo9I | GATC | 3 cut(s) | 109, 150, 157 |
| LpnPI | CCDG | 3 cut(s) | 260, 363, 380 |
| MaeI | CTAG | 4 cut(s) | 86, 98, 140, 161 |
| MaeIII | GTNAC | 1 cut(s) | 259 |
| MalI | GATC | 3 cut(s) | 111, 152, 159 |
| MboI | GATC | 3 cut(s) | 109, 150, 157 |
| MboII | GAAGA | 6 cut(s) | 29, 101, 158, 202, 205, 210 |
| MflI | RGATCY | 1 cut(s) | 157 |
| MluCI | AATT | 3 cut(s) | 20, 68, 234 |
| MmeI | TCCRAC | 1 cut(s) | 87 |
| MnlI | CCTC | 5 cut(s) | 136, 160, 213, 263, 374 |
| MroXI | GAANNNNTTC | 1 cut(s) | 218 |
| MseI | TTAA | 1 cut(s) | 233 |
| MspI | CCGG | 1 cut(s) | 247 |
| NdeII | GATC | 3 cut(s) | 109, 150, 157 |
| NheI | GCTAGC | 1 cut(s) | 97 |
| NlaIII | CATG | 2 cut(s) | 34, 320 |
| PdmI | GAANNNNTTC | 1 cut(s) | 218 |
| PfeI | GAWTC | 1 cut(s) | 219 |
| PshBI | ATTAAT | 1 cut(s) | 233 |
| PsiI | TTATAA | 1 cut(s) | 210 |
| PspPI | GGNCC | 1 cut(s) | 347 |
| PsuI | RGATCY | 1 cut(s) | 157 |
| SaqAI | TTAA | 1 cut(s) | 233 |
| Sau3AI | GATC | 3 cut(s) | 109, 150, 157 |
| Sau96I | GGNCC | 1 cut(s) | 347 |
| SetI | ASST | 6 cut(s) | 66, 99, 138, 205, 349, 375 |
| SinI | GGWCC | 1 cut(s) | 347 |
| Sse9I | AATT | 3 cut(s) | 20, 68, 234 |
| SspMI | CTAG | 4 cut(s) | 86, 98, 140, 161 |
| TaaI | ACNGT | 1 cut(s) | 54 |
| TaqI | TCGA | 1 cut(s) | 222 |
| TasI | AATT | 3 cut(s) | 20, 68, 234 |
| TfiI | GAWTC | 1 cut(s) | 219 |
| Tru1I | TTAA | 1 cut(s) | 233 |
| Tru9I | TTAA | 1 cut(s) | 233 |
| TscAI | CASTG | 1 cut(s) | 295 |
| TspDTI | ATGAA | 2 cut(s) | 30, 47 |
| TspGWI | ACGGA | 1 cut(s) | 200 |
| TspRI | CASTG | 1 cut(s) | 295 |
| VpaK11BI | GGWCC | 1 cut(s) | 347 |
| VspI | ATTAAT | 1 cut(s) | 233 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 368 |
| XapI | RAATTY | 2 cut(s) | 20, 68 |
| XbaI | TCTAGA | 1 cut(s) | 139 |
| XmnI | GAANNNNTTC | 1 cut(s) | 218 |
| XspI | CTAG | 4 cut(s) | 86, 98, 140, 161 |