Rh1AG475100

Belongs to the universal ribosomal protein uS5 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001359
Physical Location & Seq
Forward (+)
68586530 .. 68590973
4444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG475100.1

Sequence Viewer

Length: 837 bp
ATGTCCAAATCGCAAGCGTTCTCGTGGTCGCGTCTCATCTTCAATCAAGCAATCAACAAAACCCGCAACGCCCCACTCCCCTTCATCTCCTCCACCTTACCACACTTGCTCAGGTCCTCTGGGCACTATTCCACAGTATCAGACAGAGTAGTCCGTGACCTTCTGGCCGAGGTCGAGAGAGAAAAGCAGAGAGAAAGAGAGCAGAGGAAAAGGGCTGGTCTCGACACCAAAGACATTGACCAAGAAGATGAGGAGGACTACATGCGTGTCACTCCATTGATAGAGAAGCTTGAGAAGGAGGAGCTCAAGGCCTCTGGGGATCTCAATTCCTATGAGGAGCCCACCGATTCGGATAGTGACGACGACGACGAGCGCTTTACTCCCGATGCCGTCAAGAAGAGGTTTGATGAGTTTCAGAGGAAGTTCACGCGACACGAGGAATTGCTCAAGAATTTCACACAGGCTGGTTATGCTAAAGCAAAAGGTCCAGCTGTCCCCCTCGCCCTCCAGAAGGCATATGAGAAATGCTTTCAGAATCTCCACTATGTAGAACGACATGAGGAGCATACAATTGCGCATGCAATACAAACTACATATAAAAAAACAAAGGTTTATCTCTGGCCTGCACCCACTAGGACGGGTATGAAAGCAGGAAGAACTGTCGAAACCATTCTAAACTTGGCAGGTTTCAATAATGTCAAGTCTAAGGTTGTTGGTTCAAGGAATCCTCATAATACAGTGAAGGCTGTTTTCAAAGCCCTTAATGCGATTGAAACGCCCAAGGATGTTCAAGAAAAGTTTGGACGCACTGTTGTTGAGAAGTCCCTCGTATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

278

Amino Acids

31.94

Weight (kDa)

8.9

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S5_C PF03719 198 - 266 1.1e-23 Ribosomal protein S5, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
Acc16I TGCGCA 1 cut(s) 576
Acc36I ACCTGC 1 cut(s) 674
AccII CGCG 2 cut(s) 31, 430
AciI CCGC 1 cut(s) 64
AclWI GGATC 1 cut(s) 327
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 451
AfeI AGCGCT 1 cut(s) 374
AfiI CCNNNNNNNGG 1 cut(s) 511
AgsI TTSAA 6 cut(s) 43, 691, 720, 754, 773, 791
AluBI AGCT 3 cut(s) 289, 304, 491
AluI AGCT 3 cut(s) 289, 304, 491
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 2 cut(s) 38, 224
AlwI GGATC 1 cut(s) 327
Aor51HI AGCGCT 1 cut(s) 374
AoxI GGCC 3 cut(s) 165, 309, 620
ApoI RAATTY 1 cut(s) 451
Asp700I GAANNNNTTC 1 cut(s) 669
AspLEI GCGC 2 cut(s) 375, 577
AspS9I GGNCC 2 cut(s) 114, 485
AvaII GGWCC 2 cut(s) 114, 485
BaeGI GKGCMC 1 cut(s) 126
BanII GRGCYC 2 cut(s) 306, 342
BauI CACGAG 2 cut(s) 22, 434
Bbv12I GWGCWC 1 cut(s) 306
BceAI ACGGC 1 cut(s) 374
BcoDI GTCTC 2 cut(s) 38, 224
BfaI CTAG 1 cut(s) 633
BfoI RGCGCY 1 cut(s) 376
BfuAI ACCTGC 1 cut(s) 674
Bme18I GGWCC 2 cut(s) 114, 485
BmgT120I GGNCC 2 cut(s) 114, 485
BmiI GGNNCC 1 cut(s) 339
BmsI GCATC 1 cut(s) 376
BpmI CTGGAG 1 cut(s) 491
Bpu10I CCTNAGC 1 cut(s) 110
BpuEI CTTGAG 3 cut(s) 290, 311, 431
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 2 cut(s) 168, 780
Bsc4I CCNNNNNNNGG 1 cut(s) 511
BseDI CCNNGG 2 cut(s) 168, 780
BseGI GGATG 1 cut(s) 790
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMII CTCAG 1 cut(s) 124
BseRI GAGGAG 5 cut(s) 79, 266, 314, 350, 575
BseSI GKGCMC 1 cut(s) 126
BsgI GTGCAG 1 cut(s) 609
Bsh1236I CGCG 2 cut(s) 31, 430
BshFI GGCC 3 cut(s) 167, 311, 622
BsiHKAI GWGCWC 1 cut(s) 306
BslFI GGGAC 2 cut(s) 479, 808
BslI CCNNNNNNNGG 1 cut(s) 511
BsmAI GTCTC 2 cut(s) 38, 224
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 479, 808
BsnI GGCC 3 cut(s) 167, 311, 622
Bso31I GGTCTC 1 cut(s) 224
Bsp1286I GDGCHC 3 cut(s) 126, 306, 342
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 1 cut(s) 64
BspANI GGCC 3 cut(s) 167, 311, 622
BspCNI CTCAG 1 cut(s) 123
BspFNI CGCG 2 cut(s) 31, 430
BspLI GGNNCC 1 cut(s) 339
BspMI ACCTGC 1 cut(s) 674
BspPI GGATC 1 cut(s) 327
BspTNI GGTCTC 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 168, 780
BssMI GATC 1 cut(s) 319
BssSI CACGAG 2 cut(s) 22, 434
BssT1I CCWWGG 1 cut(s) 780
Bst2BI CACGAG 2 cut(s) 22, 434
Bst4CI ACNGT 4 cut(s) 136, 661, 739, 811
Bst6I CTCTTC 1 cut(s) 392
BstC8I GCNNGC 3 cut(s) 15, 579, 624
BstDEI CTNAG 2 cut(s) 110, 705
BstENI CCTNNNNNAGG 1 cut(s) 509
BstF5I GGATG 1 cut(s) 790
BstFNI CGCG 2 cut(s) 31, 430
BstH2I RGCGCY 1 cut(s) 376
BstHHI GCGC 2 cut(s) 375, 577
BstKTI GATC 1 cut(s) 322
BstMAI GTCTC 2 cut(s) 38, 224
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 2 cut(s) 470, 764
BstNSI RCATGY 2 cut(s) 265, 581
BstSLI GKGCMC 1 cut(s) 126
BstUI CGCG 2 cut(s) 31, 430
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BsuRI GGCC 3 cut(s) 167, 311, 622
BtsCI GGATG 1 cut(s) 790
BtsIMutI CAGTG 2 cut(s) 744, 807
BveI ACCTGC 1 cut(s) 674
Cac8I GCNNGC 3 cut(s) 15, 579, 624
CfoI GCGC 2 cut(s) 375, 577
Cfr13I GGNCC 2 cut(s) 114, 485
CseI GACGC 2 cut(s) 20, 813
CviAII CATG 3 cut(s) 262, 557, 578
DdeI CTNAG 2 cut(s) 110, 705
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Ecl136II GAGCTC 1 cut(s) 304
Eco130I CCWWGG 1 cut(s) 780
Eco147I AGGCCT 1 cut(s) 311
Eco24I GRGCYC 2 cut(s) 306, 342
Eco31I GGTCTC 1 cut(s) 224
Eco47I GGWCC 2 cut(s) 114, 485
Eco47III AGCGCT 1 cut(s) 374
Eco53kI GAGCTC 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 304
EcoNI CCTNNNNNAGG 1 cut(s) 509
EcoO109I RGGNCCY 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 780
EcoT38I GRGCYC 2 cut(s) 306, 342
ErhI CCWWGG 1 cut(s) 780
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 3 cut(s) 265, 560, 581
FaqI GGGAC 2 cut(s) 479, 808
FatI CATG 3 cut(s) 261, 556, 577
FauI CCCGC 1 cut(s) 71
FauNDI CATATG 1 cut(s) 517
FokI GGATG 1 cut(s) 797
FriOI GRGCYC 2 cut(s) 306, 342
FspBI CTAG 1 cut(s) 633
FspI TGCGCA 1 cut(s) 576
GlaI GCGC 2 cut(s) 374, 576
GsuI CTGGAG 1 cut(s) 491
HaeII RGCGCY 1 cut(s) 376
HaeIII GGCC 3 cut(s) 167, 311, 622
HgaI GACGC 2 cut(s) 20, 813
HhaI GCGC 2 cut(s) 375, 577
Hin1II CATG 3 cut(s) 265, 560, 581
Hin6I GCGC 2 cut(s) 373, 575
HinP1I GCGC 2 cut(s) 373, 575
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 3 cut(s) 347, 535, 724
Hpy166II GTNNAC 1 cut(s) 426
Hpy188I TCNGA 4 cut(s) 142, 352, 417, 534
Hpy188III TCNNGA 7 cut(s) 175, 221, 383, 394, 448, 508, 791
Hpy8I GTNNAC 1 cut(s) 426
Hpy99I CGWCG 3 cut(s) 365, 368, 371
HpyAV CCTTC 5 cut(s) 91, 170, 289, 505, 736
HpyCH4III ACNGT 4 cut(s) 136, 661, 739, 811
HpyCH4V TGCA 2 cut(s) 581, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 470, 764
HpyF3I CTNAG 2 cut(s) 110, 705
Hsp92II CATG 3 cut(s) 265, 560, 581
HspAI GCGC 2 cut(s) 373, 575
Kzo9I GATC 1 cut(s) 319
LmnI GCTCC 3 cut(s) 301, 337, 562
LweI GCATC 1 cut(s) 376
MaeI CTAG 1 cut(s) 633
MaeIII GTNAC 3 cut(s) 155, 268, 356
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 4 cut(s) 31, 257, 409, 666
MfeI CAATTG 1 cut(s) 570
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 3 cut(s) 126, 306, 342
MluCI AATT 4 cut(s) 325, 440, 451, 570
MroXI GAANNNNTTC 1 cut(s) 669
MseI TTAA 1 cut(s) 762
MspA1I CMGCKG 1 cut(s) 491
MunI CAATTG 1 cut(s) 570
MvnI CGCG 2 cut(s) 31, 430
MwoI GCNNNNNNNGC 2 cut(s) 470, 764
NdeI CATATG 1 cut(s) 517
NdeII GATC 1 cut(s) 319
NlaIII CATG 3 cut(s) 265, 560, 581
NlaIV GGNNCC 1 cut(s) 339
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 3 cut(s) 155, 268, 356
NsbI TGCGCA 1 cut(s) 576
NspI RCATGY 2 cut(s) 265, 581
PaeI GCATGC 1 cut(s) 581
PceI AGGCCT 1 cut(s) 311
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PdmI GAANNNNTTC 1 cut(s) 669
PfeI GAWTC 3 cut(s) 347, 535, 724
PpuMI RGGWCCY 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 2 cut(s) 114, 485
PspPPI RGGWCCY 1 cut(s) 114
PsuI RGATCY 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 491
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 762
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 2 cut(s) 114, 485
SduI GDGCHC 3 cut(s) 126, 306, 342
SfaNI GCATC 1 cut(s) 376
SinI GGWCC 2 cut(s) 114, 485
SmlI CTYRAG 3 cut(s) 290, 305, 446
SmoI CTYRAG 3 cut(s) 290, 305, 446
SphI GCATGC 1 cut(s) 581
Sse9I AATT 4 cut(s) 325, 440, 451, 570
SseBI AGGCCT 1 cut(s) 311
SsiI CCGC 1 cut(s) 64
SspMI CTAG 1 cut(s) 633
SstI GAGCTC 1 cut(s) 306
StuI AGGCCT 1 cut(s) 311
StyI CCWWGG 1 cut(s) 780
TaaI ACNGT 4 cut(s) 136, 661, 739, 811
TaqI TCGA 3 cut(s) 174, 222, 663
TasI AATT 4 cut(s) 325, 440, 451, 570
TfiI GAWTC 3 cut(s) 347, 535, 724
Tru1I TTAA 1 cut(s) 762
Tru9I TTAA 1 cut(s) 762
TscAI CASTG 2 cut(s) 744, 814
TseFI GTSAC 3 cut(s) 155, 268, 356
Tsp45I GTSAC 3 cut(s) 155, 268, 356
TspDTI ATGAA 2 cut(s) 73, 659
TspGWI ACGGA 1 cut(s) 143
TspRI CASTG 2 cut(s) 744, 814
VpaK11BI GGWCC 2 cut(s) 114, 485
XagI CCTNNNNNAGG 1 cut(s) 509
XapI RAATTY 1 cut(s) 451
XceI RCATGY 2 cut(s) 265, 581
XcmI CCANNNNNNNNNTGG 1 cut(s) 676
XmnI GAANNNNTTC 1 cut(s) 669
XspI CTAG 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.