Rmu_co8237749.1_g000001

Belongs to the universal ribosomal protein uS5 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8237749.1
Physical Location & Seq
Forward (+)
1 .. 714
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8237749.1_g000001.1.cds

Sequence Viewer

Length: 202 bp
gacgggtatgaaagcgggaagaactgtcgaaaccattctaaacttggctggtttcaataatgtcaagtctaaggttgttggttcaaggagtcctcataatacagtgaaggctgttttcaaagcccttactgtgattgaaacttccaaggatgttcaagaaaactttgggcgcactgttgttgagaagtaccttctatcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

66

Amino Acids

7.18

Weight (kDa)

9.99

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 15
AfaI GTAC 1 cut(s) 189
AgsI TTSAA 5 cut(s) 56, 85, 119, 138, 156
Asp700I GAANNNNTTC 1 cut(s) 34
AspLEI GCGC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 1 cut(s) 155
BspACI CCGC 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 145
Bst4CI ACNGT 4 cut(s) 26, 104, 131, 176
BstDEI CTNAG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 155
BstHHI GCGC 1 cut(s) 172
BtsCI GGATG 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 109, 172
CfoI GCGC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 188
CviJI RGCY 3 cut(s) 48, 111, 123
CviKI_1 RGCY 3 cut(s) 48, 111, 123
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaiI YATR 3 cut(s) 9, 97, 200
FauI CCCGC 1 cut(s) 8
FokI GGATG 1 cut(s) 162
GlaI GCGC 1 cut(s) 171
HhaI GCGC 1 cut(s) 172
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 1 cut(s) 89
Hpy188III TCNNGA 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 101, 201
HpyCH4III ACNGT 4 cut(s) 26, 104, 131, 176
HpyF3I CTNAG 1 cut(s) 70
HspAI GCGC 1 cut(s) 170
LpnPI CCDG 1 cut(s) 34
MboII GAAGA 1 cut(s) 31
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 1 cut(s) 103
MroXI GAANNNNTTC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 34
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SchI GAGTC 1 cut(s) 98
SetI ASST 2 cut(s) 76, 193
SgeI CNNG 8 cut(s) 16, 28, 56, 61, 77, 97, 158, 168
SsiI CCGC 1 cut(s) 15
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 4 cut(s) 26, 104, 131, 176
TaqI TCGA 1 cut(s) 28
TscAI CASTG 2 cut(s) 109, 179
TspDTI ATGAA 1 cut(s) 24
TspRI CASTG 2 cut(s) 109, 179
XcmI CCANNNNNNNNNTGG 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.