Rmu_co8374597.1_g000001

Belongs to the universal ribosomal protein uS5 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8374597.1
Physical Location & Seq
Reverse (-)
1 .. 1139
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8374597.1_g000001.1.cds

Sequence Viewer

Length: 278 bp
tagcagagttggatcatacttttggaaagaagggaaaggttctagaggaagagatcagagatctagcagaggaaagaaatgatttgacggagaagaagagaagacctctctataggaaaggtttcgatgttagattaattgatgtgaaccggacttgtaaagttacaaagggaggacaagtggtcaaatacactgctatattagtttgtggaaactatcatggtgttgtaggttatgctaaagcaaaaggtccagctgtccccctcgccctccaaaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

92

Amino Acids

10.31

Weight (kDa)

9.58

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 20
AhdI GACNNNNNGTC 1 cut(s) 181
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
AlwI GGATC 1 cut(s) 20
AseI ATTAAT 1 cut(s) 136
Asp700I GAANNNNTTC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 250
AvaII GGWCC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 108
BfaI CTAG 2 cut(s) 43, 64
BfmI CTRYAG 1 cut(s) 111
BglII AGATCT 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 250
BmeRI GACNNNNNGTC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 250
BpiI GAAGAC 1 cut(s) 108
BplI GAGNNNNNCTC 2 cut(s) 90, 122
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 244
Bsp143I GATC 3 cut(s) 12, 53, 60
BspPI GGATC 1 cut(s) 20
BssMI GATC 3 cut(s) 12, 53, 60
Bst6I CTCTTC 2 cut(s) 44, 91
BstKTI GATC 3 cut(s) 15, 56, 63
BstMBI GATC 3 cut(s) 12, 53, 60
BstSFI CTRYAG 1 cut(s) 111
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BtsI GCAGTG 1 cut(s) 191
BtsIMutI CAGTG 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 250
CviAII CATG 1 cut(s) 220
CviJI RGCY 1 cut(s) 256
CviKI_1 RGCY 1 cut(s) 256
DpnI GATC 3 cut(s) 14, 55, 62
DpnII GATC 3 cut(s) 12, 53, 60
DriI GACNNNNNGTC 1 cut(s) 181
Eam1104I CTCTTC 2 cut(s) 44, 91
Eam1105I GACNNNNNGTC 1 cut(s) 181
EarI CTCTTC 2 cut(s) 44, 91
Eco47I GGWCC 1 cut(s) 250
FaeI CATG 1 cut(s) 223
FaiI YATR 5 cut(s) 17, 113, 199, 221, 236
FaqI GGGAC 1 cut(s) 244
FatI CATG 1 cut(s) 219
FspBI CTAG 2 cut(s) 43, 64
HapII CCGG 1 cut(s) 150
Hin1II CATG 1 cut(s) 223
HpaII CCGG 1 cut(s) 150
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 147
HpyAV CCTTC 1 cut(s) 24
Hsp92II CATG 1 cut(s) 223
Kzo9I GATC 3 cut(s) 12, 53, 60
LpnPI CCDG 2 cut(s) 163, 266
MaeI CTAG 2 cut(s) 43, 64
MaeIII GTNAC 1 cut(s) 162
MalI GATC 3 cut(s) 14, 55, 62
MboI GATC 3 cut(s) 12, 53, 60
MboII GAAGA 4 cut(s) 61, 105, 108, 113
MflI RGATCY 1 cut(s) 60
MluCI AATT 1 cut(s) 137
MnlI CCTC 5 cut(s) 39, 63, 116, 166, 274
MroXI GAANNNNTTC 1 cut(s) 121
MseI TTAA 1 cut(s) 136
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 1 cut(s) 150
NdeII GATC 3 cut(s) 12, 53, 60
NlaIII CATG 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 121
PshBI ATTAAT 1 cut(s) 136
PspPI GGNCC 1 cut(s) 250
PsuI RGATCY 1 cut(s) 60
PvuII CAGCTG 1 cut(s) 256
SaqAI TTAA 1 cut(s) 136
Sau3AI GATC 3 cut(s) 12, 53, 60
Sau96I GGNCC 1 cut(s) 250
SetI ASST 6 cut(s) 41, 108, 123, 234, 252, 258
SfcI CTRYAG 1 cut(s) 111
SgeI CNNG 7 cut(s) 55, 76, 162, 167, 190, 232, 265
SinI GGWCC 1 cut(s) 250
Sse9I AATT 1 cut(s) 137
SspMI CTAG 2 cut(s) 43, 64
TaqI TCGA 1 cut(s) 125
TasI AATT 1 cut(s) 137
Tru1I TTAA 1 cut(s) 136
Tru9I TTAA 1 cut(s) 136
TscAI CASTG 1 cut(s) 198
TspGWI ACGGA 1 cut(s) 103
TspRI CASTG 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 250
VspI ATTAAT 1 cut(s) 136
XbaI TCTAGA 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 121
XspI CTAG 2 cut(s) 43, 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.