Rh1DG465800

Belongs to the universal ribosomal protein uS5 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001359
Physical Location & Seq
Forward (+)
66744703 .. 66749119
4417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG465800.1

Sequence Viewer

Length: 846 bp
ATGTCCAAATCGCAAGCGTTCTCGTGGTCGCGTCTCATCTTCAATCAAGCAATCAACAAAACCCGCAACGCCCCACTCCCCTTCATCTCCTCCACCTTACCACACTTGCTCAGTTCCTCTGGGCAGACCCATTACTATTCCACAGTATCAGACAGAGTAGTCCGTGACCTTCTGGCCGAGGTCGAGAGAGAAAAGCAGAGAGAAAGGGAACAGAGGAAAAGGGCTGGTCTCGACACCAAAGACATTGACCAAGAAGATGAGGAGGACTACATGCGTGTCACTCCATTGATAGACAAGCTTGAGAAGGAGAAGCTCAAGGCCACTGGGGATCTCAATTCCTATGAGGAGCCCACCGATTCGGATAGTGACGACGACGACGAGCGCTTTACTCCCGATGCTGTCAAGAAGAGGTTTGATGAGTTTCAGAGGAAGTTCACGCGACACGAGGAATTGCTCAAGAATTTCACACAGGCTGGTTATGCTAAAGCAAAAGGTCCAGCTGTCCCCCTCGCCCTCCAGAAGGCATATGAGAAATGCTTTCAGAATCTCCACTATGTAGAACGACATGAGGAGCATACAATTGCGCATGCAATACAAACTACATATAAAAAAACAAAGGTTTATCTCTGGCCTGCACCCACTAGGACGGGTATGAAAGCAGGAAGAACTGTCGAAACCATTCTAAACTTGGCAGGTTTCAATAATGTTAAGTCTAAGGTTGTTGGTTCAAGGAATCCTCATAATACAGTGAAGGCTGTTTTCAAAGCCCTTAATGCGATTGAAACGCCCAAGGATGTTCAAGAAAAGTTTGGACGCACTGTTGTTGAGAAGTCCCTCGTATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S5 Ribosomal_S5_C

Protein Analysis

281

Amino Acids

32.26

Weight (kDa)

9.02

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S5_C PF03719 201 - 269 1.1e-23 Ribosomal protein S5, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
Acc16I TGCGCA 1 cut(s) 585
Acc36I ACCTGC 1 cut(s) 683
AccII CGCG 2 cut(s) 31, 439
AciI CCGC 1 cut(s) 64
AclWI GGATC 1 cut(s) 336
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 460
AfeI AGCGCT 1 cut(s) 383
AfiI CCNNNNNNNGG 1 cut(s) 520
AgsI TTSAA 6 cut(s) 43, 700, 729, 763, 782, 800
AluBI AGCT 3 cut(s) 298, 313, 500
AluI AGCT 3 cut(s) 298, 313, 500
Alw26I GTCTC 2 cut(s) 38, 233
AlwI GGATC 1 cut(s) 336
Aor51HI AGCGCT 1 cut(s) 383
AoxI GGCC 3 cut(s) 174, 318, 629
ApoI RAATTY 1 cut(s) 460
Asp700I GAANNNNTTC 1 cut(s) 678
AspLEI GCGC 2 cut(s) 384, 586
AspS9I GGNCC 1 cut(s) 494
AvaII GGWCC 1 cut(s) 494
BanII GRGCYC 1 cut(s) 351
BauI CACGAG 2 cut(s) 22, 443
BcoDI GTCTC 2 cut(s) 38, 233
BfaI CTAG 1 cut(s) 642
BfoI RGCGCY 1 cut(s) 385
BfuAI ACCTGC 1 cut(s) 683
Bme18I GGWCC 1 cut(s) 494
BmgT120I GGNCC 1 cut(s) 494
BmiI GGNNCC 1 cut(s) 348
BmrI ACTGGG 1 cut(s) 333
BmsI GCATC 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 333
BpmI CTGGAG 1 cut(s) 500
BpuEI CTTGAG 3 cut(s) 299, 320, 440
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 177, 789
Bsc4I CCNNNNNNNGG 1 cut(s) 520
Bse1I ACTGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 177, 789
BseGI GGATG 1 cut(s) 799
BseLI CCNNNNNNNGG 1 cut(s) 520
BseMII CTCAG 1 cut(s) 124
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 4 cut(s) 79, 275, 359, 584
BsgI GTGCAG 1 cut(s) 618
Bsh1236I CGCG 2 cut(s) 31, 439
BshFI GGCC 3 cut(s) 176, 320, 631
BslFI GGGAC 2 cut(s) 488, 817
BslI CCNNNNNNNGG 1 cut(s) 520
BsmAI GTCTC 2 cut(s) 38, 233
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 488, 817
BsnI GGCC 3 cut(s) 176, 320, 631
Bso31I GGTCTC 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 1 cut(s) 328
BspACI CCGC 1 cut(s) 64
BspANI GGCC 3 cut(s) 176, 320, 631
BspCNI CTCAG 1 cut(s) 123
BspFNI CGCG 2 cut(s) 31, 439
BspLI GGNNCC 1 cut(s) 348
BspMI ACCTGC 1 cut(s) 683
BspPI GGATC 1 cut(s) 336
BspTNI GGTCTC 1 cut(s) 233
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 2 cut(s) 177, 789
BssMI GATC 1 cut(s) 328
BssSI CACGAG 2 cut(s) 22, 443
BssT1I CCWWGG 1 cut(s) 789
Bst2BI CACGAG 2 cut(s) 22, 443
Bst4CI ACNGT 4 cut(s) 145, 670, 748, 820
Bst6I CTCTTC 1 cut(s) 401
BstC8I GCNNGC 3 cut(s) 15, 588, 633
BstDEI CTNAG 2 cut(s) 110, 714
BstENI CCTNNNNNAGG 1 cut(s) 518
BstF5I GGATG 1 cut(s) 799
BstFNI CGCG 2 cut(s) 31, 439
BstH2I RGCGCY 1 cut(s) 385
BstHHI GCGC 2 cut(s) 384, 586
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 2 cut(s) 38, 233
BstMBI GATC 1 cut(s) 328
BstMWI GCNNNNNNNGC 2 cut(s) 479, 773
BstNSI RCATGY 2 cut(s) 274, 590
BstUI CGCG 2 cut(s) 31, 439
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BsuRI GGCC 3 cut(s) 176, 320, 631
BtsCI GGATG 1 cut(s) 799
BtsIMutI CAGTG 3 cut(s) 321, 753, 816
BveI ACCTGC 1 cut(s) 683
Cac8I GCNNGC 3 cut(s) 15, 588, 633
CfoI GCGC 2 cut(s) 384, 586
Cfr13I GGNCC 1 cut(s) 494
CseI GACGC 2 cut(s) 20, 822
CviAII CATG 3 cut(s) 271, 566, 587
DdeI CTNAG 2 cut(s) 110, 714
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
Eco130I CCWWGG 1 cut(s) 789
Eco24I GRGCYC 1 cut(s) 351
Eco31I GGTCTC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 494
Eco47III AGCGCT 1 cut(s) 383
EcoNI CCTNNNNNAGG 1 cut(s) 518
EcoT14I CCWWGG 1 cut(s) 789
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 789
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 3 cut(s) 274, 569, 590
FaqI GGGAC 2 cut(s) 488, 817
FatI CATG 3 cut(s) 270, 565, 586
FauI CCCGC 1 cut(s) 71
FauNDI CATATG 1 cut(s) 526
FokI GGATG 1 cut(s) 806
FriOI GRGCYC 1 cut(s) 351
FspBI CTAG 1 cut(s) 642
FspI TGCGCA 1 cut(s) 585
GlaI GCGC 2 cut(s) 383, 585
GsuI CTGGAG 1 cut(s) 500
HaeII RGCGCY 1 cut(s) 385
HaeIII GGCC 3 cut(s) 176, 320, 631
HgaI GACGC 2 cut(s) 20, 822
HhaI GCGC 2 cut(s) 384, 586
Hin1II CATG 3 cut(s) 274, 569, 590
Hin6I GCGC 2 cut(s) 382, 584
HinP1I GCGC 2 cut(s) 382, 584
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 3 cut(s) 356, 544, 733
Hpy166II GTNNAC 1 cut(s) 435
Hpy188I TCNGA 4 cut(s) 151, 361, 426, 543
Hpy188III TCNNGA 7 cut(s) 184, 230, 392, 403, 457, 517, 800
Hpy8I GTNNAC 1 cut(s) 435
Hpy99I CGWCG 3 cut(s) 374, 377, 380
HpyAV CCTTC 5 cut(s) 91, 179, 298, 514, 745
HpyCH4III ACNGT 4 cut(s) 145, 670, 748, 820
HpyCH4V TGCA 2 cut(s) 590, 635
HpyF10VI GCNNNNNNNGC 2 cut(s) 479, 773
HpyF3I CTNAG 2 cut(s) 110, 714
Hsp92II CATG 3 cut(s) 274, 569, 590
HspAI GCGC 2 cut(s) 382, 584
Kzo9I GATC 1 cut(s) 328
LmnI GCTCC 2 cut(s) 346, 571
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 642
MaeIII GTNAC 3 cut(s) 164, 277, 365
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 4 cut(s) 31, 266, 418, 675
MfeI CAATTG 1 cut(s) 579
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 4 cut(s) 334, 449, 460, 579
MroXI GAANNNNTTC 1 cut(s) 678
MseI TTAA 2 cut(s) 708, 771
MspA1I CMGCKG 1 cut(s) 500
MunI CAATTG 1 cut(s) 579
MvnI CGCG 2 cut(s) 31, 439
MwoI GCNNNNNNNGC 2 cut(s) 479, 773
NdeI CATATG 1 cut(s) 526
NdeII GATC 1 cut(s) 328
NlaIII CATG 3 cut(s) 274, 569, 590
NlaIV GGNNCC 1 cut(s) 348
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 3 cut(s) 164, 277, 365
NsbI TGCGCA 1 cut(s) 585
NspI RCATGY 2 cut(s) 274, 590
PaeI GCATGC 1 cut(s) 590
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 678
PfeI GAWTC 3 cut(s) 356, 544, 733
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 1 cut(s) 494
PsuI RGATCY 1 cut(s) 328
PvuII CAGCTG 1 cut(s) 500
SaqAI TTAA 2 cut(s) 708, 771
Sau3AI GATC 1 cut(s) 328
Sau96I GGNCC 1 cut(s) 494
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 1 cut(s) 385
SinI GGWCC 1 cut(s) 494
SmlI CTYRAG 3 cut(s) 299, 314, 455
SmoI CTYRAG 3 cut(s) 299, 314, 455
SphI GCATGC 1 cut(s) 590
Sse9I AATT 4 cut(s) 334, 449, 460, 579
SsiI CCGC 1 cut(s) 64
SspMI CTAG 1 cut(s) 642
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 4 cut(s) 145, 670, 748, 820
TaqI TCGA 3 cut(s) 183, 231, 672
TasI AATT 4 cut(s) 334, 449, 460, 579
TfiI GAWTC 3 cut(s) 356, 544, 733
Tru1I TTAA 2 cut(s) 708, 771
Tru9I TTAA 2 cut(s) 708, 771
TscAI CASTG 3 cut(s) 328, 753, 823
TseFI GTSAC 3 cut(s) 164, 277, 365
Tsp45I GTSAC 3 cut(s) 164, 277, 365
TspDTI ATGAA 2 cut(s) 73, 668
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 3 cut(s) 328, 753, 823
VpaK11BI GGWCC 1 cut(s) 494
XagI CCTNNNNNAGG 1 cut(s) 518
XapI RAATTY 1 cut(s) 460
XceI RCATGY 2 cut(s) 274, 590
XcmI CCANNNNNNNNNTGG 1 cut(s) 685
XmnI GAANNNNTTC 1 cut(s) 678
XspI CTAG 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.