Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000629

Physical Location & Seq

Genomic Coordinates Reverse (-)

38754162 .. 38755203

Gene Structure 1042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45487

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGATGCTGATGTCGACAAGGCTGCTGACCTTGCTCCCTTGGGAATCCTCTATAACAAGTTCTCGAGTCTTTCTTCAAGAAGGAATTTATGATGAACTTATGAAGAAGTTGCAAGTGAAGGCAAAGGATTGGGTTGTTGGGGATCCTTTTCATCAAGGACCCCAGAGAGGAGCAACTTTGTTAACAGGAGGAAAGCCTGTGGGGAAGAAGGGTTATTACATTGAGCCAACAGTATTCACTGTAGTCAAGGATGATATGCTTATTGCCAAGGATGACATATTCGGACCTGTAGTGTCGCTAATGAAGTTCAAGACCATTGAGGAGGGAGTAGCGAGAGCCAACAATACCAAGTATGGCCTAGCTGCAGGCATTGTAACCAAGAACATCATGTGGCTAACACCGTCTCAAGATCAATCCGCGCAGGCATTATATGGATCAACAGCTACTTTGCCTTCGACCGGGACGTATAAGTCTCCTCGTAATGTCAGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

164

Amino Acids

18.05

Weight (kDa)

9.4

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	52 - 129	1.2e-26	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24503
fragaria_vesca	FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05090 FvH4_1g05100
malus_domestica	MD02G1049700.v1.1 MD02G1049800.v1.1 MD02G1049900.v1.1 MD02G1050000.v1.1 MD15G1187300.v1.1
prunus_persica	Prupe.7G229100_v2.0.a1 Prupe.7G229100_v2.0.a1
pyrus_communis	pycom02g04120 pycom15g16790
rosa_chinensis	RchiOBHm_Chr2g0090721 RchiOBHm_Chr2g0090731 RchiOBHm_Chr2g0090741 RchiOBHm_Chr3g0491911 RchiOBHm_Chr3g0491951 RchiOBHm_Chr3g0491981
rosa_laevigata	RLG00000016137 RLG00000016138 RLG00000016139 RLG00000022800 RLG00000022801 RLG00000022808 RLG00000022810 RLG00000022817
rosa_multiflora	Rmu_sc0004195.1_g000003 Rmu_ssc0000367.1_g000002 Rmu_ssc0000367.1_g000003
rosa_roxburghii	Rroxscaffold_2G00150860 Rroxscaffold_2G00150870 Rroxscaffold_2G00150880 Rroxscaffold_6G00390770 Rroxscaffold_6G00392670
rosa_rugosa	Rorug02G0009900 Rorug02G0010000 Rorug02G0010100 Rorug02G0010200 Rorug03G0250900 Rorug03G0250900 Rorug03G0290800
rosa_samantha	Rh2AG056000 Rh2BG054400 Rh2BG054800 Rh2CG056700 Rh2CG056800 Rh2CG057100 Rh2DG055500 Rh2DG055700 Rh3AG300500 Rh3AG300700 Rh3AG300800 Rh3AG300900 Rh3BG336800 Rh3BG337100 Rh3CG334100 Rh3CG334200 Rh3DG336000 Rh3DG336300 Rh3DG336400 Rh3DG336500
rosa_wichuraiana	Rw2G004650 Rw2G004660 Rw3G026580 Rw3G026590 Rw3G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	469
AccI	GTMKAC	1 cut(s)	14
AccII	CGCG	1 cut(s)	419
AciI	CCGC	1 cut(s)	417
AclWI	GGATC	3 cut(s)	137, 150, 442
AcsI	RAATTY	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	167, 458
AgsI	TTSAA	2 cut(s)	77, 310
AluBI	AGCT	2 cut(s)	362, 443
AluI	AGCT	2 cut(s)	362, 443
Alw26I	GTCTC	2 cut(s)	408, 477
AlwI	GGATC	3 cut(s)	137, 150, 442
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	2 cut(s)	22, 362
ApoI	RAATTY	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	421
AspS9I	GGNCC	2 cut(s)	158, 284
AsuC2I	CCSGG	1 cut(s)	460
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	2 cut(s)	158, 284
BamHI	GGATCC	1 cut(s)	142
BarI	GAAGNNNNNNTAC	2 cut(s)	200, 232
BbvI	GCAGC	2 cut(s)	9, 349
BcgI	CGANNNNNNTGC	2 cut(s)	4, 38
BcnI	CCSGG	1 cut(s)	460
BcoDI	GTCTC	2 cut(s)	408, 477
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	3 cut(s)	240, 288, 363
BisI	GCNGC	2 cut(s)	23, 363
BlsI	GCNGC	2 cut(s)	24, 364
Bme1390I	CCNGG	1 cut(s)	460
Bme18I	GGWCC	2 cut(s)	158, 284
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	158, 284
BmiI	GGNNCC	2 cut(s)	144, 160
BmrFI	CCNGG	1 cut(s)	460
BpuEI	CTTGAG	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	460
BsaJI	CCNNGG	2 cut(s)	38, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 458
BseDI	CCNNGG	2 cut(s)	38, 267
BseGI	GGATG	2 cut(s)	256, 277
BseLI	CCNNNNNNNGG	2 cut(s)	167, 458
BseRI	GAGGAG	3 cut(s)	183, 335, 465
BseXI	GCAGC	2 cut(s)	9, 349
Bsh1236I	CGCG	1 cut(s)	419
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	357
BsiEI	CGRYCG	1 cut(s)	459
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	459
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	2 cut(s)	167, 458
BsmAI	GTCTC	2 cut(s)	408, 477
BsmBI	CGTCTC	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	357
BsoBI	CYCGRG	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	142, 409, 434
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	1 cut(s)	357
BspFNI	CGCG	1 cut(s)	419
BspLI	GGNNCC	2 cut(s)	144, 160
BspMAI	CTGCAG	1 cut(s)	367
BspPI	GGATC	3 cut(s)	137, 150, 442
BssECI	CCNNGG	2 cut(s)	38, 267
BssMI	GATC	3 cut(s)	142, 409, 434
BssT1I	CCWWGG	2 cut(s)	38, 267
Bst4CI	ACNGT	3 cut(s)	232, 241, 402
BstC8I	GCNNGC	2 cut(s)	367, 423
BstF5I	GGATG	2 cut(s)	256, 277
BstFNI	CGCG	1 cut(s)	419
BstHHI	GCGC	1 cut(s)	421
BstKTI	GATC	3 cut(s)	145, 412, 437
BstMAI	GTCTC	2 cut(s)	408, 477
BstMBI	GATC	3 cut(s)	142, 409, 434
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	458
BstSFI	CTRYAG	3 cut(s)	240, 288, 363
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	2 cut(s)	9, 349
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	256, 277
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	367, 423
CfoI	GCGC	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	158, 284
CviAII	CATG	1 cut(s)	388
CviJI	RGCY	8 cut(s)	22, 196, 226, 338, 357, 362, 394, 443
CviKI_1	RGCY	8 cut(s)	22, 196, 226, 338, 357, 362, 394, 443
DpnI	GATC	3 cut(s)	144, 411, 436
DpnII	GATC	3 cut(s)	142, 409, 434
DrdI	GACNNNNNNGTC	1 cut(s)	469
DseDI	GACNNNNNNGTC	1 cut(s)	469
Eco130I	CCWWGG	2 cut(s)	38, 267
Eco47I	GGWCC	2 cut(s)	158, 284
Eco88I	CYCGRG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	158
EcoT14I	CCWWGG	2 cut(s)	38, 267
ErhI	CCWWGG	2 cut(s)	38, 267
Esp3I	CGTCTC	1 cut(s)	408
FaeI	CATG	1 cut(s)	391
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	1 cut(s)	387
FblI	GTMKAC	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	23, 363
FokI	GGATG	2 cut(s)	263, 284
Fsp4HI	GCNGC	2 cut(s)	23, 363
FspBI	CTAG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	420
GluI	GCNGC	2 cut(s)	23, 363
HaeIII	GGCC	1 cut(s)	357
HapII	CCGG	1 cut(s)	459
HhaI	GCGC	1 cut(s)	421
Hin1II	CATG	1 cut(s)	391
Hin6I	GCGC	1 cut(s)	419
HinP1I	GCGC	1 cut(s)	419
HincII	GTYRAC	2 cut(s)	15, 183
HindII	GTYRAC	2 cut(s)	15, 183
HinfI	GANTC	2 cut(s)	44, 66
HpaI	GTTAAC	1 cut(s)	183
HpaII	CCGG	1 cut(s)	459
Hpy166II	GTNNAC	2 cut(s)	15, 183
Hpy188I	TCNGA	1 cut(s)	284
Hpy188III	TCNNGA	4 cut(s)	63, 77, 310, 407
Hpy8I	GTNNAC	2 cut(s)	15, 183
HpyAV	CCTTC	4 cut(s)	74, 112, 202, 462
HpyCH4III	ACNGT	3 cut(s)	232, 241, 402
HpyCH4IV	ACGT	1 cut(s)	464
HpyCH4V	TGCA	2 cut(s)	112, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpySE526I	ACGT	1 cut(s)	464
Hsp92II	CATG	1 cut(s)	391
HspAI	GCGC	1 cut(s)	419
KspAI	GTTAAC	1 cut(s)	183
Kzo9I	GATC	3 cut(s)	142, 409, 434
LmnI	GCTCC	2 cut(s)	39, 170
LpnPI	CCDG	7 cut(s)	171, 176, 210, 300, 351, 407, 472
Lsp1109I	GCAGC	2 cut(s)	9, 349
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	464
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	3 cut(s)	144, 411, 436
MboI	GATC	3 cut(s)	142, 409, 434
MboII	GAAGA	3 cut(s)	65, 115, 217
MflI	RGATCY	1 cut(s)	142
MluCI	AATT	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	75
MnlI	CCTC	6 cut(s)	58, 161, 182, 313, 316, 486
MseI	TTAA	1 cut(s)	182
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	1 cut(s)	460
MvnI	CGCG	1 cut(s)	419
MwoI	GCNNNNNNNGC	1 cut(s)	31
NciI	CCSGG	1 cut(s)	460
NdeII	GATC	3 cut(s)	142, 409, 434
NlaIII	CATG	1 cut(s)	391
NlaIV	GGNNCC	2 cut(s)	144, 160
PaeR7I	CTCGAG	1 cut(s)	63
PcsI	WCGNNNNNNNCGW	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	44
PkrI	GCNGC	2 cut(s)	24, 364
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	158
Psp5II	RGGWCCY	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	144, 160
PspPI	GGNCC	2 cut(s)	158, 284
PspPPI	RGGWCCY	1 cut(s)	158
PstI	CTGCAG	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	142
SalI	GTCGAC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	2 cut(s)	23, 363
Sau3AI	GATC	3 cut(s)	142, 409, 434
Sau96I	GGNCC	2 cut(s)	158, 284
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	460
SetI	ASST	5 cut(s)	32, 289, 364, 445, 467
SfcI	CTRYAG	3 cut(s)	240, 288, 363
Sfr274I	CTCGAG	1 cut(s)	63
SinI	GGWCC	2 cut(s)	158, 284
SlaI	CTCGAG	1 cut(s)	63
SmlI	CTYRAG	2 cut(s)	63, 405
SmoI	CTYRAG	2 cut(s)	63, 405
Sse9I	AATT	1 cut(s)	84
SsiI	CCGC	1 cut(s)	417
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	458
StyI	CCWWGG	2 cut(s)	38, 267
TaaI	ACNGT	3 cut(s)	232, 241, 402
TaiI	ACGT	1 cut(s)	467
TaqI	TCGA	3 cut(s)	14, 64, 455
TasI	AATT	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	1 cut(s)	244
TseI	GCWGC	2 cut(s)	22, 362
TspDTI	ATGAA	4 cut(s)	108, 116, 140, 317
TspRI	CASTG	1 cut(s)	244
VpaK11BI	GGWCC	2 cut(s)	158, 284
XapI	RAATTY	1 cut(s)	84
XhoI	CTCGAG	1 cut(s)	63
XmiI	GTMKAC	1 cut(s)	14
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.