Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004195.1

Orthogroup ID

OG0000629

Physical Location & Seq

Genomic Coordinates Forward (+)

17086 .. 18701

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004195.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atggtgcctgaaggtatcgctggagctcgacgacgatacggcaccctaaggtacaatatagccatcttggaagtgatgcagactgcagcaaagagcaatctgaaaacagtttcacttgaactaaggggcaagtcaccccttttaatttttgatgatgctgatgtcgacaaggctgctgatgaccttgctctcttgggaatcgtctacaacaagggagaaatttttgtgaccagttctcgagtctttgttcaagaaggaatttatgatgaacttgtgaagaagttgcaagtaaaggcaaaggattgggttgttggggttccttttgatcctattattcatcaaggaccccaggtaacacaggcaaaaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

123

Amino Acids

13.59

Weight (kDa)

7.93

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24503
fragaria_vesca	FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05090 FvH4_1g05100
malus_domestica	MD02G1049700.v1.1 MD02G1049800.v1.1 MD02G1049900.v1.1 MD02G1050000.v1.1 MD15G1187300.v1.1
prunus_persica	Prupe.7G229100_v2.0.a1 Prupe.7G229100_v2.0.a1
pyrus_communis	pycom02g04120 pycom15g16790
rosa_chinensis	RchiOBHm_Chr2g0090721 RchiOBHm_Chr2g0090731 RchiOBHm_Chr2g0090741 RchiOBHm_Chr3g0491911 RchiOBHm_Chr3g0491951 RchiOBHm_Chr3g0491981
rosa_laevigata	RLG00000016137 RLG00000016138 RLG00000016139 RLG00000022800 RLG00000022801 RLG00000022808 RLG00000022810 RLG00000022817
rosa_multiflora	Rmu_sc0004195.1_g000003 Rmu_ssc0000367.1_g000002 Rmu_ssc0000367.1_g000003
rosa_roxburghii	Rroxscaffold_2G00150860 Rroxscaffold_2G00150870 Rroxscaffold_2G00150880 Rroxscaffold_6G00390770 Rroxscaffold_6G00392670
rosa_rugosa	Rorug02G0009900 Rorug02G0010000 Rorug02G0010100 Rorug02G0010200 Rorug03G0250900 Rorug03G0250900 Rorug03G0290800
rosa_samantha	Rh2AG056000 Rh2BG054400 Rh2BG054800 Rh2CG056700 Rh2CG056800 Rh2CG057100 Rh2DG055500 Rh2DG055700 Rh3AG300500 Rh3AG300700 Rh3AG300800 Rh3AG300900 Rh3BG336800 Rh3BG337100 Rh3CG334100 Rh3CG334200 Rh3DG336000 Rh3DG336300 Rh3DG336400 Rh3DG336500
rosa_wichuraiana	Rw2G004650 Rw2G004660 Rw3G026580 Rw3G026590 Rw3G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 41
AccI	GTMKAC	2 cut(s)	165, 204
AclWI	GGATC	1 cut(s)	320
AcsI	RAATTY	2 cut(s)	219, 258
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	1 cut(s)	53
AgsI	TTSAA	2 cut(s)	119, 251
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw21I	GWGCWC	1 cut(s)	28
AlwI	GGATC	1 cut(s)	320
Ama87I	CYCGRG	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	86, 173
ApoI	RAATTY	2 cut(s)	219, 258
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	126
AvaI	CYCGRG	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	344
AxyI	CCTNAGG	1 cut(s)	47
BanI	GGYRCC	2 cut(s)	4, 41
BanII	GRGCYC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	28
BbvI	GCAGC	2 cut(s)	98, 160
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BciT130I	CCWGG	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	2 cut(s)	87, 174
BlsI	GCNGC	2 cut(s)	88, 175
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	1 cut(s)	344
BmeT110I	CYCGRG	1 cut(s)	237
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	4 cut(s)	6, 43, 318, 346
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	2 cut(s)	66, 145
BpmI	CTGGAG	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	348
Bse1I	ACTGG	1 cut(s)	231
Bse21I	CCTNAGG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	2 cut(s)	98, 160
BshNI	GGYRCC	2 cut(s)	4, 41
BsiHKAI	GWGCWC	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp143I	GATC	1 cut(s)	325
BspLI	GGNNCC	4 cut(s)	6, 43, 318, 346
BspMAI	CTGCAG	1 cut(s)	88
BspPI	GGATC	1 cut(s)	320
BspT107I	GGYRCC	2 cut(s)	4, 41
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	47, 122
BstKTI	GATC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	98, 160
Bsu36I	CCTNAGG	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	52
CviJI	RGCY	3 cut(s)	26, 62, 173
CviKI_1	RGCY	3 cut(s)	26, 62, 173
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	2 cut(s)	47, 122
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
Ecl136II	GAGCTC	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	344
Eco53kI	GAGCTC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	30
Eco81I	CCTNAGG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	237
EcoICRI	GAGCTC	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	28
FaiI	YATR	2 cut(s)	59, 264
FblI	GTMKAC	2 cut(s)	165, 204
Fnu4HI	GCNGC	2 cut(s)	87, 174
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	2 cut(s)	87, 174
GluI	GCNGC	2 cut(s)	87, 174
GsuI	CTGGAG	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	2 cut(s)	198, 240
HphI	GGTGA	1 cut(s)	126
Hpy166II	GTNNAC	2 cut(s)	166, 205
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	2 cut(s)	237, 251
Hpy8I	GTNNAC	2 cut(s)	166, 205
Hpy99I	CGWCG	2 cut(s)	33, 36
HpyAV	CCTTC	2 cut(s)	5, 248
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	3 cut(s)	79, 86, 286
HpyF3I	CTNAG	2 cut(s)	47, 122
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	6 cut(s)	6, 21, 244, 335, 344, 362
Lsp1109I	GCAGC	2 cut(s)	98, 160
LweI	GCATC	2 cut(s)	66, 145
MaeIII	GTNAC	3 cut(s)	132, 226, 352
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	3 cut(s)	144, 219, 258
MlyI	GAGTC	1 cut(s)	249
MseI	TTAA	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	350
NdeII	GATC	1 cut(s)	325
NlaIV	GGNNCC	4 cut(s)	6, 43, 318, 346
NmuCI	GTSAC	2 cut(s)	132, 226
PaeR7I	CTCGAG	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	198
PkrI	GCNGC	2 cut(s)	88, 175
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
PpuMI	RGGWCCY	1 cut(s)	344
Psp124BI	GAGCTC	1 cut(s)	28
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	4 cut(s)	6, 43, 318, 346
PspPI	GGNCC	1 cut(s)	344
PspPPI	RGGWCCY	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SacI	GAGCTC	1 cut(s)	28
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	2 cut(s)	87, 174
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	28
SetI	ASST	5 cut(s)	16, 28, 53, 186, 354
SfaNI	GCATC	2 cut(s)	66, 145
SfcI	CTRYAG	1 cut(s)	84
Sfr274I	CTCGAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	344
SlaI	CTCGAG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	237
SmoI	CTYRAG	1 cut(s)	237
Sse9I	AATT	3 cut(s)	144, 219, 258
SstI	GAGCTC	1 cut(s)	28
StyD4I	CCNGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	3 cut(s)	28, 165, 238
TasI	AATT	3 cut(s)	144, 219, 258
TfiI	GAWTC	1 cut(s)	198
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TseFI	GTSAC	2 cut(s)	132, 226
TseI	GCWGC	2 cut(s)	86, 173
Tsp45I	GTSAC	2 cut(s)	132, 226
TspDTI	ATGAA	2 cut(s)	282, 326
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	2 cut(s)	219, 258
XhoI	CTCGAG	1 cut(s)	237
XmiI	GTMKAC	2 cut(s)	165, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.