Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000629

Physical Location & Seq

Genomic Coordinates Forward (+)

901279 .. 903714

Gene Structure 2436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0010000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTGGCGGCGAATCTGAAGGCGGAGACTTTGGGTCTGATGGAGAAGAGGAGTGCTTTGGAGGCGGAGATGAATGCCATCATCGAGCGTCTTACTCAGCCCGGCGGTCCTGGACTTTCCGGCAACCTCCTTAACTTCGAGGGGTTTCCTCGCGAGGACATTGACATCCCAGCTGTGCGAGCTGAACGGCGTCGTCTTGCTGAACTGAAAAATGATTACAAAGAGATTACGGAGAAATTGGACCGAAATATACAAGTTTTGCATTCGGCAAAGCTTGCTCCAAAATCATCATCCCTCAAACCATCGGATGGTCAGAGTGGTTCAGTTGTCAATGTTGGAGAATCGGCATCTTCAGCCAATGTTTCTTCGAATGTGATGGATGTGGATGTGAGCGTACCTTTTGCATTGGTTGATGAGATAGCTGATGCATCGCCAGCAGCAGAGGATGGTTTACAGCTTGGAGATCAGATTGTGAAATTTGGCAATGTAGAAAATGGTGACAATTTGTTGCAGAAACTTGCTTCTGAGGCTCAAACGAATCAGGGTTGTGCTGTACCTGTCATGGTCTTAAGGCAAGGTGCCCAAGTCAACTTAATGGTGACACCTAGAACATGGCAAGGCAGGGGTCTGCTGGGGTGTCATTTCCAGATCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

218

Amino Acids

23.33

Weight (kDa)

4.95

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nas2_N	PF18265	13 - 89	1.2e-21	Nas2 N_terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24503
fragaria_vesca	FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05090 FvH4_1g05100
malus_domestica	MD02G1049700.v1.1 MD02G1049800.v1.1 MD02G1049900.v1.1 MD02G1050000.v1.1 MD15G1187300.v1.1
prunus_persica	Prupe.7G229100_v2.0.a1 Prupe.7G229100_v2.0.a1
pyrus_communis	pycom02g04120 pycom15g16790
rosa_chinensis	RchiOBHm_Chr2g0090721 RchiOBHm_Chr2g0090731 RchiOBHm_Chr2g0090741 RchiOBHm_Chr3g0491911 RchiOBHm_Chr3g0491951 RchiOBHm_Chr3g0491981
rosa_laevigata	RLG00000016137 RLG00000016138 RLG00000016139 RLG00000022800 RLG00000022801 RLG00000022808 RLG00000022810 RLG00000022817
rosa_multiflora	Rmu_sc0004195.1_g000003 Rmu_ssc0000367.1_g000002 Rmu_ssc0000367.1_g000003
rosa_roxburghii	Rroxscaffold_2G00150860 Rroxscaffold_2G00150870 Rroxscaffold_2G00150880 Rroxscaffold_6G00390770 Rroxscaffold_6G00392670
rosa_rugosa	Rorug02G0009900 Rorug02G0010000 Rorug02G0010100 Rorug02G0010200 Rorug03G0250900 Rorug03G0250900 Rorug03G0290800
rosa_samantha	Rh2AG056000 Rh2BG054400 Rh2BG054800 Rh2CG056700 Rh2CG056800 Rh2CG057100 Rh2DG055500 Rh2DG055700 Rh3AG300500 Rh3AG300700 Rh3AG300800 Rh3AG300900 Rh3BG336800 Rh3BG337100 Rh3CG334100 Rh3CG334200 Rh3DG336000 Rh3DG336300 Rh3DG336400 Rh3DG336500
rosa_wichuraiana	Rw2G004650 Rw2G004660 Rw3G026580 Rw3G026590 Rw3G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	578
AccB7I	CCANNNNNTGG	1 cut(s)	308
AccII	CGCG	1 cut(s)	153
AciI	CCGC	4 cut(s)	8, 23, 65, 105
AcsI	RAATTY	1 cut(s)	476
AcuI	CTGAAG	2 cut(s)	38, 336
AcyI	GRCGYC	1 cut(s)	190
AfaI	GTAC	2 cut(s)	396, 555
AfiI	CCNNNNNNNGG	1 cut(s)	308
AflII	CTTAAG	1 cut(s)	568
AhdI	GACNNNNNGTC	1 cut(s)	33
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	5 cut(s)	173, 182, 274, 422, 457
AluI	AGCT	5 cut(s)	173, 182, 274, 422, 457
Alw26I	GTCTC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	437
ApoI	RAATTY	1 cut(s)	476
AspS9I	GGNCC	2 cut(s)	107, 241
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	509, 610
AsuII	TTCGAA	1 cut(s)	368
AvaII	GGWCC	2 cut(s)	107, 241
BaeGI	GKGCMC	1 cut(s)	583
BanI	GGYRCC	1 cut(s)	578
BbvI	GCAGC	1 cut(s)	449
BccI	CCATC	6 cut(s)	34, 86, 302, 310, 370, 440
BceAI	ACGGC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	606
BfrI	CTTAAG	1 cut(s)	568
BglII	AGATCT	1 cut(s)	648
BisI	GCNGC	2 cut(s)	9, 438
BlsI	GCNGC	2 cut(s)	10, 439
Bme1390I	CCNGG	2 cut(s)	102, 111
Bme18I	GGWCC	2 cut(s)	107, 241
BmeRI	GACNNNNNGTC	1 cut(s)	33
BmgT120I	GGNCC	2 cut(s)	107, 241
BmiI	GGNNCC	1 cut(s)	580
BmrFI	CCNGG	2 cut(s)	102, 111
BmsI	GCATC	3 cut(s)	356, 415, 437
Bpu14I	TTCGAA	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	102
BsaHI	GRCGYC	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	490
BseBI	CCWGG	1 cut(s)	111
BseGI	GGATG	6 cut(s)	165, 290, 313, 385, 391, 451
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	2 cut(s)	110, 516
BseRI	GAGGAG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	583
BseXI	GCAGC	1 cut(s)	449
BseYI	CCCAGC	2 cut(s)	169, 631
Bsh1236I	CGCG	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	578
BsiSI	CCGG	2 cut(s)	102, 120
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	20
BsmI	GAATGC	2 cut(s)	79, 262
Bsp119I	TTCGAA	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	583
Bsp143I	GATC	2 cut(s)	463, 648
Bsp68I	TCGCGA	1 cut(s)	153
BspACI	CCGC	4 cut(s)	8, 23, 65, 105
BspCNI	CTCAG	2 cut(s)	109, 517
BspFNI	CGCG	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	580
BspT104I	TTCGAA	1 cut(s)	368
BspT107I	GGYRCC	1 cut(s)	578
BspTI	CTTAAG	1 cut(s)	568
BsrDI	GCAATG	1 cut(s)	490
BssMI	GATC	2 cut(s)	463, 648
BssNI	GRCGYC	1 cut(s)	190
Bst2UI	CCWGG	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	190
BstAFI	CTTAAG	1 cut(s)	568
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstBI	TTCGAA	1 cut(s)	368
BstC8I	GCNNGC	3 cut(s)	180, 276, 435
BstDEI	CTNAG	2 cut(s)	96, 525
BstF5I	GGATG	6 cut(s)	165, 290, 313, 385, 391, 451
BstFNI	CGCG	1 cut(s)	153
BstKTI	GATC	2 cut(s)	466, 651
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	2 cut(s)	463, 648
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 179, 275, 353, 434, 527
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	2 cut(s)	100, 109
BstSLI	GKGCMC	1 cut(s)	583
BstUI	CGCG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	449
BstX2I	RGATCY	1 cut(s)	648
BstYI	RGATCY	1 cut(s)	648
BtgZI	GCGATG	1 cut(s)	414
BtsCI	GGATG	6 cut(s)	165, 290, 313, 385, 391, 451
BtuMI	TCGCGA	1 cut(s)	153
Cac8I	GCNNGC	3 cut(s)	180, 276, 435
Cfr13I	GGNCC	2 cut(s)	107, 241
CseI	GACGC	2 cut(s)	77, 179
Csp6I	GTAC	2 cut(s)	395, 554
CviAII	CATG	2 cut(s)	562, 612
CviJI	RGCY	8 cut(s)	100, 173, 182, 274, 356, 422, 457, 530
CviKI_1	RGCY	8 cut(s)	100, 173, 182, 274, 356, 422, 457, 530
CviQI	GTAC	2 cut(s)	395, 554
DdeI	CTNAG	2 cut(s)	96, 525
DpnI	GATC	2 cut(s)	465, 650
DpnII	GATC	2 cut(s)	463, 648
DriI	GACNNNNNGTC	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	41
Eam1105I	GACNNNNNGTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	41
EciI	GGCGGA	2 cut(s)	38, 80
Eco47I	GGWCC	2 cut(s)	107, 241
Eco57I	CTGAAG	2 cut(s)	38, 336
EcoRII	CCWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	430
FaeI	CATG	2 cut(s)	565, 615
FaiI	YATR	3 cut(s)	251, 563, 613
FatI	CATG	2 cut(s)	561, 611
Fnu4HI	GCNGC	2 cut(s)	9, 438
FokI	GGATG	6 cut(s)	152, 277, 320, 392, 398, 458
Fsp4HI	GCNGC	2 cut(s)	9, 438
FspBI	CTAG	1 cut(s)	606
GluI	GCNGC	2 cut(s)	9, 438
GsaI	CCCAGC	2 cut(s)	173, 635
HapII	CCGG	2 cut(s)	102, 120
HgaI	GACGC	2 cut(s)	77, 179
Hin1I	GRCGYC	1 cut(s)	190
Hin1II	CATG	2 cut(s)	565, 615
HincII	GTYRAC	1 cut(s)	589
HindII	GTYRAC	1 cut(s)	589
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	3 cut(s)	13, 341, 538
HpaII	CCGG	2 cut(s)	102, 120
HphI	GGTGA	2 cut(s)	509, 610
Hpy166II	GTNNAC	2 cut(s)	452, 589
Hpy188I	TCNGA	6 cut(s)	18, 39, 307, 315, 468, 526
Hpy188III	TCNNGA	2 cut(s)	152, 646
Hpy8I	GTNNAC	2 cut(s)	452, 589
Hpy99I	CGWCG	1 cut(s)	195
HpyAV	CCTTC	1 cut(s)	13
HpyCH4V	TGCA	4 cut(s)	262, 404, 428, 511
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 179, 275, 353, 434, 527
HpyF3I	CTNAG	2 cut(s)	96, 525
Hsp92I	GRCGYC	1 cut(s)	190
Hsp92II	CATG	2 cut(s)	565, 615
Kzo9I	GATC	2 cut(s)	463, 648
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	1 cut(s)	449
LweI	GCATC	3 cut(s)	356, 415, 437
MaeI	CTAG	1 cut(s)	606
MaeIII	GTNAC	2 cut(s)	497, 598
MalI	GATC	2 cut(s)	465, 650
MboI	GATC	2 cut(s)	463, 648
MboII	GAAGA	3 cut(s)	58, 342, 357
MflI	RGATCY	1 cut(s)	648
MhlI	GDGCHC	1 cut(s)	583
MluCI	AATT	3 cut(s)	236, 476, 502
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	9 cut(s)	42, 55, 133, 137, 148, 159, 305, 436, 520
Mph1103I	ATGCAT	1 cut(s)	430
MseI	TTAA	3 cut(s)	132, 569, 593
MspA1I	CMGCKG	1 cut(s)	173
MspCI	CTTAAG	1 cut(s)	568
MspI	CCGG	2 cut(s)	102, 120
MspR9I	CCNGG	2 cut(s)	102, 111
Mva1269I	GAATGC	2 cut(s)	79, 262
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	153
MwoI	GCNNNNNNNGC	6 cut(s)	62, 179, 275, 353, 434, 527
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	2 cut(s)	463, 648
NlaIII	CATG	2 cut(s)	565, 615
NlaIV	GGNNCC	1 cut(s)	580
NmuCI	GTSAC	2 cut(s)	497, 598
NruI	TCGCGA	1 cut(s)	153
NsiI	ATGCAT	1 cut(s)	430
NspV	TTCGAA	1 cut(s)	368
PctI	GAATGC	2 cut(s)	79, 262
PfeI	GAWTC	3 cut(s)	13, 341, 538
PflMI	CCANNNNNTGG	1 cut(s)	308
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	2 cut(s)	10, 439
Psp6I	CCWGG	1 cut(s)	109
PspFI	CCCAGC	2 cut(s)	169, 631
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	580
PspPI	GGNCC	2 cut(s)	107, 241
PsuI	RGATCY	1 cut(s)	648
PvuII	CAGCTG	1 cut(s)	173
RruI	TCGCGA	1 cut(s)	153
RsaI	GTAC	2 cut(s)	396, 555
RsaNI	GTAC	2 cut(s)	395, 554
SaqAI	TTAA	3 cut(s)	132, 569, 593
SatI	GCNGC	2 cut(s)	9, 438
Sau3AI	GATC	2 cut(s)	463, 648
Sau96I	GGNCC	2 cut(s)	107, 241
ScrFI	CCNGG	2 cut(s)	102, 111
SduI	GDGCHC	1 cut(s)	583
SfaNI	GCATC	3 cut(s)	356, 415, 437
SfuI	TTCGAA	1 cut(s)	368
SinI	GGWCC	2 cut(s)	107, 241
SmlI	CTYRAG	1 cut(s)	568
SmoI	CTYRAG	1 cut(s)	568
Sse9I	AATT	3 cut(s)	236, 476, 502
SsiI	CCGC	4 cut(s)	8, 23, 65, 105
SspMI	CTAG	1 cut(s)	606
StyD4I	CCNGG	2 cut(s)	100, 109
TaqI	TCGA	3 cut(s)	84, 138, 368
TaqII	GACCGA	1 cut(s)	258
TasI	AATT	3 cut(s)	236, 476, 502
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	3 cut(s)	13, 341, 538
Tru1I	TTAA	3 cut(s)	132, 569, 593
Tru9I	TTAA	3 cut(s)	132, 569, 593
TseFI	GTSAC	2 cut(s)	497, 598
TseI	GCWGC	1 cut(s)	437
Tsp45I	GTSAC	2 cut(s)	497, 598
TspDTI	ATGAA	1 cut(s)	86
TspGWI	ACGGA	1 cut(s)	245
Van91I	CCANNNNNTGG	1 cut(s)	308
Vha464I	CTTAAG	1 cut(s)	568
VpaK11BI	GGWCC	2 cut(s)	107, 241
XapI	RAATTY	1 cut(s)	476
XspI	CTAG	1 cut(s)	606
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.