Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000629

Physical Location & Seq

Genomic Coordinates Forward (+)

4174313 .. 4176205

Gene Structure 1893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016139

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGTCATCAAACCAGCTGAGCAGACACCACTTTCAGCTCTCTATTATGCTCATCTGGCCAAGTTGGTAAGCTTGCAAAAACATTCTCATAGTATTAATCCGGCACAGTTGCTTGACATGCTATGTGGCGAGACTGTGACGGGCGAGACTGTGACAGGTTATGTGGTCTATCCTATTGACAACTTAGTTCTAGTGACGTTGTTTATGAAGGCTGGCGTTCCTGATGGAGTGATTAATGTCATAACTGGATATGGAGAGACTGCTGGTTCGGCCATCACTCATCATATGGACATTGACAAAGTCAATTTTACTGGTTCCACAGACGTAGGCCGTCAAGTGATGCAGGCTGCAGCAAAGAGCAACTTAAAAGCAGTTTCACTTGAACTAGGGGGCAGGGCTGCTGACCTTGCTCTCTTAGGAATCCTCTACAACAAGTTCCGTGTTTTTGTTCAAGAAGGGATCTATGATGAACTTGTGAAGAAATTAAAAGTAAAGGCAAAATCTTGGGCTGTTGGGGATCCTTTTGATCCTAATGTTCGTCAAGGACCCCAGGGGGCAAGCTGGGGGAACAAGGGATATTACAGTGAGCTAACAGTATTCACTGATGTCAAGGATGACATGCTCGTAGCCAACGATGAGATATTTGGACCTGTAAAGTCTCTGATGAAGTTCAAGACCATTGAGGAGGCAATACAGAGAGCCAACTGCACCGAGTATGGCCTAGCAGCCACTCCCATCTATAACTCTCCATGGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

253

Amino Acids

27.45

Weight (kDa)

5.96

Isoelectric Point (pI)

19.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	60 - 134	4.4e-24	Aldehyde dehydrogenase family
Aldedh	PF00171	147 - 184	4.6e-07	Aldehyde dehydrogenase family
Aldedh	PF00171	190 - 243	7.2e-17	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24503
fragaria_vesca	FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05090 FvH4_1g05100
malus_domestica	MD02G1049700.v1.1 MD02G1049800.v1.1 MD02G1049900.v1.1 MD02G1050000.v1.1 MD15G1187300.v1.1
prunus_persica	Prupe.7G229100_v2.0.a1 Prupe.7G229100_v2.0.a1
pyrus_communis	pycom02g04120 pycom15g16790
rosa_chinensis	RchiOBHm_Chr2g0090721 RchiOBHm_Chr2g0090731 RchiOBHm_Chr2g0090741 RchiOBHm_Chr3g0491911 RchiOBHm_Chr3g0491951 RchiOBHm_Chr3g0491981
rosa_laevigata	RLG00000016137 RLG00000016138 RLG00000016139 RLG00000022800 RLG00000022801 RLG00000022808 RLG00000022810 RLG00000022817
rosa_multiflora	Rmu_sc0004195.1_g000003 Rmu_ssc0000367.1_g000002 Rmu_ssc0000367.1_g000003
rosa_roxburghii	Rroxscaffold_2G00150860 Rroxscaffold_2G00150870 Rroxscaffold_2G00150880 Rroxscaffold_6G00390770 Rroxscaffold_6G00392670
rosa_rugosa	Rorug02G0009900 Rorug02G0010000 Rorug02G0010100 Rorug02G0010200 Rorug03G0250900 Rorug03G0250900 Rorug03G0290800
rosa_samantha	Rh2AG056000 Rh2BG054400 Rh2BG054800 Rh2CG056700 Rh2CG056800 Rh2CG057100 Rh2DG055500 Rh2DG055700 Rh3AG300500 Rh3AG300700 Rh3AG300800 Rh3AG300900 Rh3BG336800 Rh3BG337100 Rh3CG334100 Rh3CG334200 Rh3DG336000 Rh3DG336300 Rh3DG336400 Rh3DG336500
rosa_wichuraiana	Rw2G004650 Rw2G004660 Rw3G026580 Rw3G026590 Rw3G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	467, 512, 521, 525
AcoI	YGGCCR	2 cut(s)	57, 270
AgsI	TTSAA	3 cut(s)	383, 452, 673
AjnI	CCWGG	1 cut(s)	549
AluBI	AGCT	5 cut(s)	17, 38, 72, 561, 589
AluI	AGCT	5 cut(s)	17, 38, 72, 561, 589
Alw26I	GTCTC	4 cut(s)	125, 140, 251, 663
AlwI	GGATC	4 cut(s)	467, 512, 521, 525
AoxI	GGCC	4 cut(s)	57, 270, 328, 718
ApeKI	GCWGC	4 cut(s)	347, 350, 398, 725
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AseI	ATTAAT	2 cut(s)	96, 234
AspS9I	GGNCC	2 cut(s)	545, 647
AvaII	GGWCC	2 cut(s)	545, 647
BalI	TGGCCA	1 cut(s)	59
BamHI	GGATCC	1 cut(s)	517
BbvI	GCAGC	4 cut(s)	334, 362, 385, 737
BccI	CCATC	3 cut(s)	218, 281, 743
BceAI	ACGGC	1 cut(s)	315
BciT130I	CCWGG	1 cut(s)	551
BcoDI	GTCTC	4 cut(s)	125, 140, 251, 663
BfaI	CTAG	3 cut(s)	191, 386, 722
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	4 cut(s)	348, 351, 399, 726
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	4 cut(s)	349, 352, 400, 727
Bme1390I	CCNGG	1 cut(s)	551
Bme18I	GGWCC	2 cut(s)	545, 647
BmgT120I	GGNCC	2 cut(s)	545, 647
BmiI	GGNNCC	3 cut(s)	316, 519, 547
BmrFI	CCNGG	1 cut(s)	551
BmsI	GCATC	1 cut(s)	330
Bpu1102I	GCTNAGC	1 cut(s)	18
BsaJI	CCNNGG	3 cut(s)	549, 550, 749
Bse1I	ACTGG	2 cut(s)	250, 316
BseBI	CCWGG	1 cut(s)	551
BseDI	CCNNGG	3 cut(s)	549, 550, 749
BseGI	GGATG	1 cut(s)	619
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	2 cut(s)	250, 316
BseRI	GAGGAG	1 cut(s)	698
BseXI	GCAGC	4 cut(s)	334, 362, 385, 737
BseYI	CCCAGC	1 cut(s)	561
BsgI	GTGCAG	1 cut(s)	691
BshFI	GGCC	4 cut(s)	59, 272, 330, 720
BsiSI	CCGG	1 cut(s)	101
BsmAI	GTCTC	4 cut(s)	125, 140, 251, 663
BsnI	GGCC	4 cut(s)	59, 272, 330, 720
Bsp143I	GATC	3 cut(s)	459, 517, 526
Bsp1720I	GCTNAGC	1 cut(s)	18
Bsp19I	CCATGG	1 cut(s)	749
BspANI	GGCC	4 cut(s)	59, 272, 330, 720
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	3 cut(s)	316, 519, 547
BspMAI	CTGCAG	1 cut(s)	352
BspPI	GGATC	4 cut(s)	467, 512, 521, 525
BsrI	ACTGG	2 cut(s)	250, 316
BssECI	CCNNGG	3 cut(s)	549, 550, 749
BssMI	GATC	3 cut(s)	459, 517, 526
BssT1I	CCWWGG	1 cut(s)	749
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	5 cut(s)	108, 136, 151, 584, 595
BstC8I	GCNNGC	4 cut(s)	74, 214, 345, 559
BstDEI	CTNAG	3 cut(s)	18, 184, 415
BstDSI	CCRYGG	1 cut(s)	749
BstF5I	GGATG	1 cut(s)	619
BstKTI	GATC	3 cut(s)	462, 520, 529
BstMAI	GTCTC	4 cut(s)	125, 140, 251, 663
BstMBI	GATC	3 cut(s)	459, 517, 526
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 118, 269, 407
BstNI	CCWGG	1 cut(s)	551
BstNSI	RCATGY	2 cut(s)	121, 622
BstSCI	CCNGG	1 cut(s)	549
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	4 cut(s)	334, 362, 385, 737
BstX2I	RGATCY	2 cut(s)	459, 517
BstYI	RGATCY	2 cut(s)	459, 517
BsuRI	GGCC	4 cut(s)	59, 272, 330, 720
BtgI	CCRYGG	1 cut(s)	749
BtsCI	GGATG	1 cut(s)	619
BtsIMutI	CAGTG	2 cut(s)	589, 600
Cac8I	GCNNGC	4 cut(s)	74, 214, 345, 559
Cfr13I	GGNCC	2 cut(s)	545, 647
CviAII	CATG	3 cut(s)	118, 619, 750
DdeI	CTNAG	3 cut(s)	18, 184, 415
DpnI	GATC	3 cut(s)	461, 519, 528
DpnII	GATC	3 cut(s)	459, 517, 526
EaeI	YGGCCR	2 cut(s)	57, 270
Eco130I	CCWWGG	1 cut(s)	749
Eco47I	GGWCC	2 cut(s)	545, 647
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	549
EcoT14I	CCWWGG	1 cut(s)	749
ErhI	CCWWGG	1 cut(s)	749
FaeI	CATG	3 cut(s)	121, 622, 753
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FatI	CATG	3 cut(s)	117, 618, 749
FauNDI	CATATG	1 cut(s)	285
Fnu4HI	GCNGC	4 cut(s)	348, 351, 399, 726
FokI	GGATG	1 cut(s)	626
Fsp4HI	GCNGC	4 cut(s)	348, 351, 399, 726
FspBI	CTAG	3 cut(s)	191, 386, 722
GluI	GCNGC	4 cut(s)	348, 351, 399, 726
GsaI	CCCAGC	1 cut(s)	565
HaeIII	GGCC	4 cut(s)	59, 272, 330, 720
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	3 cut(s)	121, 622, 753
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	1 cut(s)	420
HpaII	CCGG	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	663
Hpy188III	TCNNGA	3 cut(s)	221, 452, 673
HpyAV	CCTTC	2 cut(s)	202, 449
HpyCH4III	ACNGT	5 cut(s)	108, 136, 151, 584, 595
HpyCH4IV	ACGT	2 cut(s)	197, 324
HpyCH4V	TGCA	4 cut(s)	76, 343, 350, 708
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 118, 269, 407
HpyF3I	CTNAG	3 cut(s)	18, 184, 415
HpySE526I	ACGT	2 cut(s)	197, 324
Hsp92II	CATG	3 cut(s)	121, 622, 753
Kzo9I	GATC	3 cut(s)	459, 517, 526
Lsp1109I	GCAGC	4 cut(s)	334, 362, 385, 737
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	3 cut(s)	191, 386, 722
MaeII	ACGT	2 cut(s)	197, 324
MaeIII	GTNAC	3 cut(s)	136, 151, 193
MalI	GATC	3 cut(s)	461, 519, 528
MboI	GATC	3 cut(s)	459, 517, 526
MboII	GAAGA	1 cut(s)	490
MflI	RGATCY	2 cut(s)	459, 517
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	2 cut(s)	304, 482
MluNI	TGGCCA	1 cut(s)	59
MnlI	CCTC	3 cut(s)	434, 676, 679
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	4 cut(s)	96, 234, 365, 485
Msp20I	TGGCCA	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	4 cut(s)	56, 118, 269, 407
NcoI	CCATGG	1 cut(s)	749
NdeI	CATATG	1 cut(s)	285
NdeII	GATC	3 cut(s)	459, 517, 526
NlaIII	CATG	3 cut(s)	121, 622, 753
NlaIV	GGNNCC	3 cut(s)	316, 519, 547
NmuCI	GTSAC	3 cut(s)	136, 151, 193
NspI	RCATGY	2 cut(s)	121, 622
PasI	CCCWGGG	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	420
PflFI	GACNNNGTC	1 cut(s)	299
PkrI	GCNGC	4 cut(s)	349, 352, 400, 727
PpuMI	RGGWCCY	1 cut(s)	545
PshBI	ATTAAT	2 cut(s)	96, 234
Psp5II	RGGWCCY	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	549
PspFI	CCCAGC	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	3 cut(s)	316, 519, 547
PspPI	GGNCC	2 cut(s)	545, 647
PspPPI	RGGWCCY	1 cut(s)	545
PstI	CTGCAG	1 cut(s)	352
PsuI	RGATCY	2 cut(s)	459, 517
PsyI	GACNNNGTC	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	17
SaqAI	TTAA	4 cut(s)	96, 234, 365, 485
SatI	GCNGC	4 cut(s)	348, 351, 399, 726
Sau3AI	GATC	3 cut(s)	459, 517, 526
Sau96I	GGNCC	2 cut(s)	545, 647
ScrFI	CCNGG	1 cut(s)	551
SfaNI	GCATC	1 cut(s)	330
SfcI	CTRYAG	1 cut(s)	348
SinI	GGWCC	2 cut(s)	545, 647
Sse9I	AATT	2 cut(s)	304, 482
SspMI	CTAG	3 cut(s)	191, 386, 722
StyD4I	CCNGG	1 cut(s)	549
StyI	CCWWGG	1 cut(s)	749
TaaI	ACNGT	5 cut(s)	108, 136, 151, 584, 595
TaiI	ACGT	2 cut(s)	200, 327
TasI	AATT	2 cut(s)	304, 482
TfiI	GAWTC	1 cut(s)	420
Tru1I	TTAA	4 cut(s)	96, 234, 365, 485
Tru9I	TTAA	4 cut(s)	96, 234, 365, 485
TscAI	CASTG	2 cut(s)	589, 607
TseFI	GTSAC	3 cut(s)	136, 151, 193
TseI	GCWGC	4 cut(s)	347, 350, 398, 725
Tsp45I	GTSAC	3 cut(s)	136, 151, 193
TspDTI	ATGAA	3 cut(s)	221, 483, 680
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	2 cut(s)	589, 607
Tth111I	GACNNNGTC	1 cut(s)	299
VpaK11BI	GGWCC	2 cut(s)	545, 647
VspI	ATTAAT	2 cut(s)	96, 234
XceI	RCATGY	2 cut(s)	121, 622
XspI	CTAG	3 cut(s)	191, 386, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.