Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000629

Physical Location & Seq

Genomic Coordinates Reverse (-)

37106657 .. 37108295

Gene Structure 1639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG300900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGATGCCTTTGTTCTTTGTCTTCCTCCGTTGCCCTGGATTGCTCTACACCGTTTCTCTCTATTTCTATTTCTATTTCAAAGTTGGGCTCTGCTTGATGAGAAATTATGCATGGGATTATGGGAACTGCTTTAGGATCAGTCTTGATTGTGGCCGGCTCCGTTCTGTTATTTGGGGGAAGACCAAGGAGACTGCGAAGCTTGAGGGAATGAGGCCAAAGAAACAGACACAAGTACACAGCCAAATGCTTCTGCCACCAAAAACAGCAAGATTGTACAATATAGCCAACTTGGAAGTGATGCAGGCTGCAGCAAAGAGCAAAGTTTCACTTGAACTACGGGGCAAAATAAGCTGTGAACTCCTAACGTTGTACAAAACATTCCCTATGACCATTGAGGAGGGAGTAGCGAGAGCCAACAATACCAAGTATGGCCTAGCTGCAGGCATTGTAACCAAGAACATCATGTGGCTAACACCGTCTCAAGATCAATCCGCGCAGGCATTATATGGATCAACAGCTACTTTGCCTTCGACCGGGACGTATAAGTCTCCTCGTAATGTCAGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

189

Amino Acids

21.38

Weight (kDa)

9.73

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24503
fragaria_vesca	FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05090 FvH4_1g05100
malus_domestica	MD02G1049700.v1.1 MD02G1049800.v1.1 MD02G1049900.v1.1 MD02G1050000.v1.1 MD15G1187300.v1.1
prunus_persica	Prupe.7G229100_v2.0.a1 Prupe.7G229100_v2.0.a1
pyrus_communis	pycom02g04120 pycom15g16790
rosa_chinensis	RchiOBHm_Chr2g0090721 RchiOBHm_Chr2g0090731 RchiOBHm_Chr2g0090741 RchiOBHm_Chr3g0491911 RchiOBHm_Chr3g0491951 RchiOBHm_Chr3g0491981
rosa_laevigata	RLG00000016137 RLG00000016138 RLG00000016139 RLG00000022800 RLG00000022801 RLG00000022808 RLG00000022810 RLG00000022817
rosa_multiflora	Rmu_sc0004195.1_g000003 Rmu_ssc0000367.1_g000002 Rmu_ssc0000367.1_g000003
rosa_roxburghii	Rroxscaffold_2G00150860 Rroxscaffold_2G00150870 Rroxscaffold_2G00150880 Rroxscaffold_6G00390770 Rroxscaffold_6G00392670
rosa_rugosa	Rorug02G0009900 Rorug02G0010000 Rorug02G0010100 Rorug02G0010200 Rorug03G0250900 Rorug03G0250900 Rorug03G0290800
rosa_samantha	Rh2AG056000 Rh2BG054400 Rh2BG054800 Rh2CG056700 Rh2CG056800 Rh2CG057100 Rh2DG055500 Rh2DG055700 Rh3AG300500 Rh3AG300700 Rh3AG300800 Rh3AG300900 Rh3BG336800 Rh3BG337100 Rh3CG334100 Rh3CG334200 Rh3DG336000 Rh3DG336300 Rh3DG336400 Rh3DG336500
rosa_wichuraiana	Rw2G004650 Rw2G004660 Rw3G026580 Rw3G026590 Rw3G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	544
AccII	CGCG	1 cut(s)	494
AciI	CCGC	1 cut(s)	492
AclI	AACGTT	1 cut(s)	365
AclWI	GGATC	2 cut(s)	143, 517
AcoI	YGGCCR	1 cut(s)	151
AfaI	GTAC	3 cut(s)	234, 275, 371
AfiI	CCNNNNNNNGG	1 cut(s)	533
AgsI	TTSAA	2 cut(s)	79, 332
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	4 cut(s)	199, 351, 437, 518
AluI	AGCT	4 cut(s)	199, 351, 437, 518
Alw26I	GTCTC	3 cut(s)	182, 483, 552
AlwI	GGATC	2 cut(s)	143, 517
AoxI	GGCC	3 cut(s)	151, 212, 430
ApeKI	GCWGC	3 cut(s)	305, 308, 437
AspLEI	GCGC	1 cut(s)	496
AsuC2I	CCSGG	1 cut(s)	535
BanII	GRGCYC	1 cut(s)	90
BbsI	GAAGAC	2 cut(s)	13, 185
BbvI	GCAGC	3 cut(s)	292, 320, 424
BciT130I	CCWGG	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	535
BcoDI	GTCTC	3 cut(s)	182, 483, 552
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	2 cut(s)	306, 438
BisI	GCNGC	3 cut(s)	306, 309, 438
BlsI	GCNGC	3 cut(s)	307, 310, 439
Bme1390I	CCNGG	2 cut(s)	36, 535
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	2 cut(s)	36, 535
BmsI	GCATC	1 cut(s)	288
BpiI	GAAGAC	2 cut(s)	13, 185
BpuEI	CTTGAG	2 cut(s)	221, 465
BpuMI	CCSGG	1 cut(s)	535
BsaJI	CCNNGG	2 cut(s)	34, 183
Bsc4I	CCNNNNNNNGG	1 cut(s)	533
Bse118I	RCCGGY	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	34, 183
BseLI	CCNNNNNNNGG	1 cut(s)	533
BseRI	GAGGAG	2 cut(s)	410, 540
BseXI	GCAGC	3 cut(s)	292, 320, 424
Bsh1236I	CGCG	1 cut(s)	494
Bsh1285I	CGRYCG	1 cut(s)	534
BshFI	GGCC	3 cut(s)	153, 214, 432
BsiEI	CGRYCG	1 cut(s)	534
BsiSI	CCGG	2 cut(s)	154, 534
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	1 cut(s)	533
BsmAI	GTCTC	3 cut(s)	182, 483, 552
BsmBI	CGTCTC	1 cut(s)	483
BsmFI	GGGAC	1 cut(s)	550
BsnI	GGCC	3 cut(s)	153, 214, 432
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp1407I	TGTACA	2 cut(s)	273, 369
Bsp143I	GATC	3 cut(s)	135, 484, 509
BspACI	CCGC	1 cut(s)	492
BspANI	GGCC	3 cut(s)	153, 214, 432
BspFNI	CGCG	1 cut(s)	494
BspLI	GGNNCC	1 cut(s)	158
BspMAI	CTGCAG	2 cut(s)	310, 442
BspPI	GGATC	2 cut(s)	143, 517
BsrFI	RCCGGY	1 cut(s)	153
BsrGI	TGTACA	2 cut(s)	273, 369
BssAI	RCCGGY	1 cut(s)	153
BssECI	CCNNGG	2 cut(s)	34, 183
BssMI	GATC	3 cut(s)	135, 484, 509
BssT1I	CCWWGG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	52, 477
BstAUI	TGTACA	2 cut(s)	273, 369
BstC8I	GCNNGC	4 cut(s)	155, 303, 442, 498
BstFNI	CGCG	1 cut(s)	494
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	3 cut(s)	138, 487, 512
BstMAI	GTCTC	3 cut(s)	182, 483, 552
BstMBI	GATC	3 cut(s)	135, 484, 509
BstMCI	CGRYCG	1 cut(s)	534
BstMWI	GCNNNNNNNGC	1 cut(s)	348
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	2 cut(s)	34, 533
BstSFI	CTRYAG	2 cut(s)	306, 438
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	3 cut(s)	292, 320, 424
BstV2I	GAAGAC	2 cut(s)	13, 185
BsuRI	GGCC	3 cut(s)	153, 214, 432
Cac8I	GCNNGC	4 cut(s)	155, 303, 442, 498
CfoI	GCGC	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	153
Csp6I	GTAC	3 cut(s)	233, 274, 370
CviAII	CATG	2 cut(s)	111, 463
CviQI	GTAC	3 cut(s)	233, 274, 370
DpnI	GATC	3 cut(s)	137, 486, 511
DpnII	GATC	3 cut(s)	135, 484, 509
DrdI	GACNNNNNNGTC	1 cut(s)	544
DseDI	GACNNNNNNGTC	1 cut(s)	544
EaeI	YGGCCR	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	183
Eco24I	GRGCYC	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	183
EcoT22I	ATGCAT	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	483
FaeI	CATG	2 cut(s)	114, 466
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	2 cut(s)	110, 462
Fnu4HI	GCNGC	3 cut(s)	306, 309, 438
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	3 cut(s)	306, 309, 438
FspBI	CTAG	1 cut(s)	434
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	3 cut(s)	306, 309, 438
HaeIII	GGCC	3 cut(s)	153, 214, 432
HapII	CCGG	2 cut(s)	154, 534
HhaI	GCGC	1 cut(s)	496
Hin1II	CATG	2 cut(s)	114, 466
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HindIII	AAGCTT	1 cut(s)	197
HpaII	CCGG	2 cut(s)	154, 534
Hpy166II	GTNNAC	2 cut(s)	235, 356
Hpy188III	TCNNGA	2 cut(s)	143, 482
Hpy8I	GTNNAC	2 cut(s)	235, 356
HpyAV	CCTTC	1 cut(s)	537
HpyCH4III	ACNGT	2 cut(s)	52, 477
HpyCH4IV	ACGT	2 cut(s)	365, 539
HpyCH4V	TGCA	4 cut(s)	110, 301, 308, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	348
HpySE526I	ACGT	2 cut(s)	365, 539
Hsp92II	CATG	2 cut(s)	114, 466
HspAI	GCGC	1 cut(s)	494
KroI	GCCGGC	1 cut(s)	153
KroNI	GCCGGC	1 cut(s)	155
Kzo9I	GATC	3 cut(s)	135, 484, 509
LmnI	GCTCC	1 cut(s)	162
LpnPI	CCDG	7 cut(s)	21, 48, 167, 287, 426, 482, 547
Lsp1109I	GCAGC	3 cut(s)	292, 320, 424
LweI	GCATC	1 cut(s)	288
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	2 cut(s)	365, 539
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	3 cut(s)	137, 486, 511
MboI	GATC	3 cut(s)	135, 484, 509
MboII	GAAGA	2 cut(s)	13, 190
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	1 cut(s)	103
MnlI	CCTC	6 cut(s)	35, 196, 204, 388, 391, 561
Mph1103I	ATGCAT	1 cut(s)	112
MroNI	GCCGGC	1 cut(s)	153
MspI	CCGG	2 cut(s)	154, 534
MspR9I	CCNGG	2 cut(s)	36, 535
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	1 cut(s)	348
NaeI	GCCGGC	1 cut(s)	155
NciI	CCSGG	1 cut(s)	535
NdeII	GATC	3 cut(s)	135, 484, 509
NgoMIV	GCCGGC	1 cut(s)	153
NlaIII	CATG	2 cut(s)	114, 466
NlaIV	GGNNCC	1 cut(s)	158
NsiI	ATGCAT	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	1 cut(s)	536
PdiI	GCCGGC	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	307, 310, 439
Psp1406I	AACGTT	1 cut(s)	365
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	158
PstI	CTGCAG	2 cut(s)	310, 442
RsaI	GTAC	3 cut(s)	234, 275, 371
RsaNI	GTAC	3 cut(s)	233, 274, 370
SatI	GCNGC	3 cut(s)	306, 309, 438
Sau3AI	GATC	3 cut(s)	135, 484, 509
ScrFI	CCNGG	2 cut(s)	36, 535
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	6 cut(s)	201, 353, 368, 439, 520, 542
SfaNI	GCATC	1 cut(s)	288
SfcI	CTRYAG	2 cut(s)	306, 438
SmlI	CTYRAG	2 cut(s)	200, 480
SmoI	CTYRAG	2 cut(s)	200, 480
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	1 cut(s)	492
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	2 cut(s)	34, 533
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	52, 477
TaiI	ACGT	2 cut(s)	368, 542
TaqI	TCGA	1 cut(s)	530
TasI	AATT	1 cut(s)	103
TatI	WGTACW	3 cut(s)	232, 273, 369
TseI	GCWGC	3 cut(s)	305, 308, 437
TspGWI	ACGGA	2 cut(s)	17, 149
XspI	CTAG	1 cut(s)	434
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.