Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000629

Physical Location & Seq

Genomic Coordinates Reverse (-)

37069060 .. 37070965

Gene Structure 1906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG300700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTTTGTTGGGCTCTGCTTGATGAGAAATTATACATGGGAACGTACAATATAGCCAACTTGGAAGTGATGCAAACTGCAGCAAAGAGCAATCTGAAAACAGGAGAAATTTTTGTGACTAGTTCTCGAGTCTTTGTTCAAGAAGGAATTTATGATCAACTTGTGAAGAAGTTGCAAGTGAAGGCAAAGGATTGGGTTGTTGGGGATCCTTTTGATCCTATTGTTCATCAAGGACCCCAGGTTGATAAAAAGCAGTTTGAGAAAATCTTGACCTACATTGAGCAGGGGAAAAGAGAAGGAGAAACTTTGTTAACAGGAGGAAAGCCTGTGGGGAAGAAGGGTTATTACATTGAGCCAACAGTATTCACTGATGTCAAGGATGATATGCTTATTGCTAAGGATGAAATATTTGGACCTGTAATGTCGCTAATGAAGTTCAAGACCATTGAGAAGAGAGTAGAGAGAGCCAACAACACCAAGTATGGCCTAGCTGCATGCATTGTAACCAAGAACGTCATGTGGCTAACACCGTCTCAAGATCAATCCGCGCAGGCATTATATGGATCAACTGCTACTTTGCCTTCGACCGCGATTGCCCTTATGGTGGATACAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

205

Amino Acids

22.95

Weight (kDa)

8.37

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	23 - 172	7.1e-49	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24503
fragaria_vesca	FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05090 FvH4_1g05100
malus_domestica	MD02G1049700.v1.1 MD02G1049800.v1.1 MD02G1049900.v1.1 MD02G1050000.v1.1 MD15G1187300.v1.1
prunus_persica	Prupe.7G229100_v2.0.a1 Prupe.7G229100_v2.0.a1
pyrus_communis	pycom02g04120 pycom15g16790
rosa_chinensis	RchiOBHm_Chr2g0090721 RchiOBHm_Chr2g0090731 RchiOBHm_Chr2g0090741 RchiOBHm_Chr3g0491911 RchiOBHm_Chr3g0491951 RchiOBHm_Chr3g0491981
rosa_laevigata	RLG00000016137 RLG00000016138 RLG00000016139 RLG00000022800 RLG00000022801 RLG00000022808 RLG00000022810 RLG00000022817
rosa_multiflora	Rmu_sc0004195.1_g000003 Rmu_ssc0000367.1_g000002 Rmu_ssc0000367.1_g000003
rosa_roxburghii	Rroxscaffold_2G00150860 Rroxscaffold_2G00150870 Rroxscaffold_2G00150880 Rroxscaffold_6G00390770 Rroxscaffold_6G00392670
rosa_rugosa	Rorug02G0009900 Rorug02G0010000 Rorug02G0010100 Rorug02G0010200 Rorug03G0250900 Rorug03G0250900 Rorug03G0290800
rosa_samantha	Rh2AG056000 Rh2BG054400 Rh2BG054800 Rh2CG056700 Rh2CG056800 Rh2CG057100 Rh2DG055500 Rh2DG055700 Rh3AG300500 Rh3AG300700 Rh3AG300800 Rh3AG300900 Rh3BG336800 Rh3BG337100 Rh3CG334100 Rh3CG334200 Rh3DG336000 Rh3DG336300 Rh3DG336400 Rh3DG336500
rosa_wichuraiana	Rw2G004650 Rw2G004660 Rw3G026580 Rw3G026590 Rw3G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	548, 590
AciI	CCGC	2 cut(s)	546, 588
AclWI	GGATC	4 cut(s)	200, 209, 213, 571
AcsI	RAATTY	2 cut(s)	108, 147
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	1 cut(s)	604
AgsI	TTSAA	2 cut(s)	140, 439
AhlI	ACTAGT	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	1 cut(s)	491
AluI	AGCT	1 cut(s)	491
Alw26I	GTCTC	1 cut(s)	537
AlwI	GGATC	4 cut(s)	200, 209, 213, 571
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	1 cut(s)	484
ApeKI	GCWGC	2 cut(s)	80, 491
ApoI	RAATTY	2 cut(s)	108, 147
AspLEI	GCGC	1 cut(s)	550
AspS9I	GGNCC	2 cut(s)	233, 413
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	2 cut(s)	233, 413
BamHI	GGATCC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	16
BarI	GAAGNNNNNNTAC	2 cut(s)	329, 361
BbvI	GCAGC	2 cut(s)	92, 478
BciT130I	CCWGG	1 cut(s)	239
BciVI	GTATCC	1 cut(s)	601
BclI	TGATCA	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	537
BcuI	ACTAGT	1 cut(s)	119
BfaI	CTAG	2 cut(s)	120, 488
BfmI	CTRYAG	1 cut(s)	78
BfuI	GTATCC	1 cut(s)	601
BisI	GCNGC	2 cut(s)	81, 492
BlsI	GCNGC	2 cut(s)	82, 493
Bme1390I	CCNGG	1 cut(s)	239
Bme18I	GGWCC	2 cut(s)	233, 413
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	233, 413
BmiI	GGNNCC	2 cut(s)	207, 235
BmrFI	CCNGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	60
Bpu10I	CCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	519
BsaJI	CCNNGG	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	2 cut(s)	385, 406
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseXI	GCAGC	2 cut(s)	92, 478
Bsh1236I	CGCG	2 cut(s)	548, 590
Bsh1285I	CGRYCG	1 cut(s)	588
BshFI	GGCC	1 cut(s)	486
BsiEI	CGRYCG	1 cut(s)	588
BsiHKCI	CYCGRG	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmAI	GTCTC	1 cut(s)	537
BsmBI	CGTCTC	1 cut(s)	537
BsnI	GGCC	1 cut(s)	486
BsoBI	CYCGRG	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	5 cut(s)	154, 205, 214, 538, 563
BspACI	CCGC	2 cut(s)	546, 588
BspANI	GGCC	1 cut(s)	486
BspFNI	CGCG	2 cut(s)	548, 590
BspLI	GGNNCC	2 cut(s)	207, 235
BspMAI	CTGCAG	1 cut(s)	82
BspPI	GGATC	4 cut(s)	200, 209, 213, 571
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	5 cut(s)	154, 205, 214, 538, 563
Bst2UI	CCWGG	1 cut(s)	239
Bst4CI	ACNGT	2 cut(s)	361, 531
Bst6I	CTCTTC	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	496, 552
BstDEI	CTNAG	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	385, 406
BstFNI	CGCG	2 cut(s)	548, 590
BstHHI	GCGC	1 cut(s)	550
BstKTI	GATC	5 cut(s)	157, 208, 217, 541, 566
BstMAI	GTCTC	1 cut(s)	537
BstMBI	GATC	5 cut(s)	154, 205, 214, 538, 563
BstMCI	CGRYCG	1 cut(s)	588
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	237
BstSFI	CTRYAG	1 cut(s)	78
BstUI	CGCG	2 cut(s)	548, 590
BstV1I	GCAGC	2 cut(s)	92, 478
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	601
BsuRI	GGCC	1 cut(s)	486
BtsCI	GGATG	2 cut(s)	385, 406
BtsIMutI	CAGTG	1 cut(s)	366
Cac8I	GCNNGC	2 cut(s)	496, 552
CfoI	GCGC	1 cut(s)	550
Cfr13I	GGNCC	2 cut(s)	233, 413
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	3 cut(s)	37, 495, 517
CviJI	RGCY	8 cut(s)	14, 56, 325, 355, 467, 486, 491, 523
CviKI_1	RGCY	8 cut(s)	14, 56, 325, 355, 467, 486, 491, 523
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	5 cut(s)	156, 207, 216, 540, 565
DpnII	GATC	5 cut(s)	154, 205, 214, 538, 563
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	16
Eco47I	GGWCC	2 cut(s)	233, 413
Eco88I	CYCGRG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	237
EcoT22I	ATGCAT	1 cut(s)	500
EcoT38I	GRGCYC	1 cut(s)	16
Esp3I	CGTCTC	1 cut(s)	537
FaeI	CATG	3 cut(s)	40, 498, 520
FatI	CATG	3 cut(s)	36, 494, 516
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	81, 492
FokI	GGATG	2 cut(s)	392, 413
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	2 cut(s)	81, 492
FspBI	CTAG	2 cut(s)	120, 488
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	2 cut(s)	81, 492
HaeIII	GGCC	1 cut(s)	486
HhaI	GCGC	1 cut(s)	550
Hin1II	CATG	3 cut(s)	40, 498, 520
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HincII	GTYRAC	1 cut(s)	312
HindII	GTYRAC	1 cut(s)	312
HinfI	GANTC	1 cut(s)	129
HpaI	GTTAAC	1 cut(s)	312
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	5 cut(s)	126, 140, 268, 439, 536
Hpy8I	GTNNAC	1 cut(s)	312
HpyAV	CCTTC	5 cut(s)	137, 175, 290, 331, 591
HpyCH4III	ACNGT	2 cut(s)	361, 531
HpyCH4IV	ACGT	2 cut(s)	44, 513
HpyCH4V	TGCA	5 cut(s)	73, 80, 175, 494, 498
HpyF3I	CTNAG	1 cut(s)	396
HpySE526I	ACGT	2 cut(s)	44, 513
Hsp92II	CATG	3 cut(s)	40, 498, 520
HspAI	GCGC	1 cut(s)	548
Ksp22I	TGATCA	1 cut(s)	154
KspAI	GTTAAC	1 cut(s)	312
Kzo9I	GATC	5 cut(s)	154, 205, 214, 538, 563
LpnPI	CCDG	8 cut(s)	87, 224, 251, 269, 300, 339, 429, 536
Lsp1109I	GCAGC	2 cut(s)	92, 478
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	2 cut(s)	120, 488
MaeII	ACGT	2 cut(s)	44, 513
MaeIII	GTNAC	2 cut(s)	115, 502
MalI	GATC	5 cut(s)	156, 207, 216, 540, 565
MboI	GATC	5 cut(s)	154, 205, 214, 538, 563
MboII	GAAGA	3 cut(s)	178, 346, 463
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	3 cut(s)	29, 108, 147
MlyI	GAGTC	1 cut(s)	138
MnlI	CCTC	1 cut(s)	311
Mph1103I	ATGCAT	1 cut(s)	500
MseI	TTAA	1 cut(s)	311
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	2 cut(s)	548, 590
NdeII	GATC	5 cut(s)	154, 205, 214, 538, 563
NlaIII	CATG	3 cut(s)	40, 498, 520
NlaIV	GGNNCC	2 cut(s)	207, 235
NmuCI	GTSAC	1 cut(s)	115
NsiI	ATGCAT	1 cut(s)	500
NspI	RCATGY	1 cut(s)	498
PaeI	GCATGC	1 cut(s)	498
PaeR7I	CTCGAG	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	82, 493
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PpuMI	RGGWCCY	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	207, 235
PspPI	GGNCC	2 cut(s)	233, 413
PspPPI	RGGWCCY	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	2 cut(s)	81, 492
Sau3AI	GATC	5 cut(s)	154, 205, 214, 538, 563
Sau96I	GGNCC	2 cut(s)	233, 413
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	6 cut(s)	47, 243, 275, 418, 493, 516
SfaNI	GCATC	1 cut(s)	60
SfcI	CTRYAG	1 cut(s)	78
Sfr274I	CTCGAG	1 cut(s)	126
SinI	GGWCC	2 cut(s)	233, 413
SlaI	CTCGAG	1 cut(s)	126
SmlI	CTYRAG	2 cut(s)	126, 534
SmoI	CTYRAG	2 cut(s)	126, 534
SpeI	ACTAGT	1 cut(s)	119
SphI	GCATGC	1 cut(s)	498
Sse9I	AATT	3 cut(s)	29, 108, 147
SsiI	CCGC	2 cut(s)	546, 588
SspI	AATATT	1 cut(s)	408
SspMI	CTAG	2 cut(s)	120, 488
StyD4I	CCNGG	1 cut(s)	237
TaaI	ACNGT	2 cut(s)	361, 531
TaiI	ACGT	2 cut(s)	47, 516
TaqI	TCGA	2 cut(s)	127, 584
TasI	AATT	3 cut(s)	29, 108, 147
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	80, 491
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	215, 417, 446
TspRI	CASTG	1 cut(s)	373
VpaK11BI	GGWCC	2 cut(s)	233, 413
XapI	RAATTY	2 cut(s)	108, 147
XceI	RCATGY	1 cut(s)	498
XhoI	CTCGAG	1 cut(s)	126
XspI	CTAG	2 cut(s)	120, 488
Zsp2I	ATGCAT	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.