Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000629

Physical Location & Seq

Genomic Coordinates Reverse (-)

88201328 .. 88202550

Gene Structure 1223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00150860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAAGGCTGGAGTTCCTGATGGAGTGATTAATGTCATAACTGGATATGGAGAGACTGCTGGTTCGGCCATCACTCATCATATGGACATTGACAAAGTCAATTTTACTGGTTCCACAGACGTAGGCCGTCAAGTGATGCAGGCTGCAGCAAAGAGCAACTTAAAAGCAGTTTCACTTGAACTAGGGGGCAAGTCACCCCTTTTAATTTTTGATGATTCCGATGTAGATAAGGCTGCTGACCTTGCTCTCTTAGGAATCCTCTACAACCAGCATGGAAAAAGAGAAGGAGCCACTTTGTTAACAGGGGGCAAGCCTTTGGGGAACAAGGGATATTACATCGAGCCAACAGTATTCACTGATGTCAAGGATGACATGCTCATAGCCAAGGATGAGATATTTGGACCTGTAATGTCTCTGATGAAGTTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

143

Amino Acids

15.2

Weight (kDa)

5.53

Isoelectric Point (pI)

17.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	2 - 90	7.1e-31	Aldehyde dehydrogenase family
Aldedh	PF00171	88 - 143	5.1e-17	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24503
fragaria_vesca	FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05090 FvH4_1g05100
malus_domestica	MD02G1049700.v1.1 MD02G1049800.v1.1 MD02G1049900.v1.1 MD02G1050000.v1.1 MD15G1187300.v1.1
prunus_persica	Prupe.7G229100_v2.0.a1 Prupe.7G229100_v2.0.a1
pyrus_communis	pycom02g04120 pycom15g16790
rosa_chinensis	RchiOBHm_Chr2g0090721 RchiOBHm_Chr2g0090731 RchiOBHm_Chr2g0090741 RchiOBHm_Chr3g0491911 RchiOBHm_Chr3g0491951 RchiOBHm_Chr3g0491981
rosa_laevigata	RLG00000016137 RLG00000016138 RLG00000016139 RLG00000022800 RLG00000022801 RLG00000022808 RLG00000022810 RLG00000022817
rosa_multiflora	Rmu_sc0004195.1_g000003 Rmu_ssc0000367.1_g000002 Rmu_ssc0000367.1_g000003
rosa_roxburghii	Rroxscaffold_2G00150860 Rroxscaffold_2G00150870 Rroxscaffold_2G00150880 Rroxscaffold_6G00390770 Rroxscaffold_6G00392670
rosa_rugosa	Rorug02G0009900 Rorug02G0010000 Rorug02G0010100 Rorug02G0010200 Rorug03G0250900 Rorug03G0250900 Rorug03G0290800
rosa_samantha	Rh2AG056000 Rh2BG054400 Rh2BG054800 Rh2CG056700 Rh2CG056800 Rh2CG057100 Rh2DG055500 Rh2DG055700 Rh3AG300500 Rh3AG300700 Rh3AG300800 Rh3AG300900 Rh3BG336800 Rh3BG337100 Rh3CG334100 Rh3CG334200 Rh3DG336000 Rh3DG336300 Rh3DG336400 Rh3DG336500
rosa_wichuraiana	Rw2G004650 Rw2G004660 Rw3G026580 Rw3G026590 Rw3G026600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	179, 427
Alw26I	GTCTC	2 cut(s)	47, 417
AoxI	GGCC	2 cut(s)	66, 124
ApeKI	GCWGC	3 cut(s)	143, 146, 233
ArsI	GACNNNNNNTTYG	2 cut(s)	46, 78
AseI	ATTAAT	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	401
BbvI	GCAGC	3 cut(s)	130, 158, 220
BccI	CCATC	2 cut(s)	14, 77
BceAI	ACGGC	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	47, 417
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	3 cut(s)	144, 147, 234
BlsI	GCNGC	3 cut(s)	145, 148, 235
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	2 cut(s)	112, 289
BmsI	GCATC	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	384
Bse1I	ACTGG	2 cut(s)	46, 112
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	2 cut(s)	373, 394
BseNI	ACTGG	2 cut(s)	46, 112
BseXI	GCAGC	3 cut(s)	130, 158, 220
BshFI	GGCC	2 cut(s)	68, 126
BsmAI	GTCTC	2 cut(s)	47, 417
BsnI	GGCC	2 cut(s)	68, 126
BspANI	GGCC	2 cut(s)	68, 126
BspLI	GGNNCC	2 cut(s)	112, 289
BspMAI	CTGCAG	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	46, 112
BssECI	CCNNGG	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	349
BstC8I	GCNNGC	2 cut(s)	141, 311
BstDEI	CTNAG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	373, 394
BstMAI	GTCTC	2 cut(s)	47, 417
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 242
BstNSI	RCATGY	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	130, 158, 220
BsuRI	GGCC	2 cut(s)	68, 126
BtsCI	GGATG	2 cut(s)	373, 394
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	2 cut(s)	141, 311
Cfr13I	GGNCC	1 cut(s)	401
CviAII	CATG	2 cut(s)	272, 373
CviJI	RGCY	9 cut(s)	8, 68, 126, 143, 233, 290, 313, 343, 383
CviKI_1	RGCY	9 cut(s)	8, 68, 126, 143, 233, 290, 313, 343, 383
DdeI	CTNAG	1 cut(s)	250
EaeI	YGGCCR	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	384
Eco47I	GGWCC	1 cut(s)	401
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	2 cut(s)	275, 376
FaiI	YATR	7 cut(s)	38, 48, 81, 83, 273, 374, 380
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FatI	CATG	2 cut(s)	271, 372
FauNDI	CATATG	1 cut(s)	81
Fnu4HI	GCNGC	3 cut(s)	144, 147, 234
FokI	GGATG	2 cut(s)	380, 401
Fsp4HI	GCNGC	3 cut(s)	144, 147, 234
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	3 cut(s)	144, 147, 234
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	68, 126
Hin1II	CATG	2 cut(s)	275, 376
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	2 cut(s)	215, 255
HpaI	GTTAAC	1 cut(s)	300
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	2 cut(s)	220, 417
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	1 cut(s)	300
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	2 cut(s)	139, 146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 242
HpyF3I	CTNAG	1 cut(s)	250
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	275, 376
KspAI	GTTAAC	1 cut(s)	300
LmnI	GCTCC	1 cut(s)	287
LpnPI	CCDG	8 cut(s)	27, 30, 45, 93, 125, 281, 288, 417
Lsp1109I	GCAGC	3 cut(s)	130, 158, 220
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	192
MluCI	AATT	2 cut(s)	100, 204
MnlI	CCTC	1 cut(s)	269
MseI	TTAA	4 cut(s)	30, 161, 203, 299
MwoI	GCNNNNNNNGC	2 cut(s)	65, 242
NdeI	CATATG	1 cut(s)	81
NlaIII	CATG	2 cut(s)	275, 376
NlaIV	GGNNCC	2 cut(s)	112, 289
NmuCI	GTSAC	1 cut(s)	192
NspI	RCATGY	1 cut(s)	376
PfeI	GAWTC	2 cut(s)	215, 255
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	3 cut(s)	145, 148, 235
PshBI	ATTAAT	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	112, 289
PspPI	GGNCC	1 cut(s)	401
PstI	CTGCAG	1 cut(s)	148
PsyI	GACNNNGTC	1 cut(s)	95
SaqAI	TTAA	4 cut(s)	30, 161, 203, 299
SatI	GCNGC	3 cut(s)	144, 147, 234
Sau96I	GGNCC	1 cut(s)	401
SetI	ASST	3 cut(s)	123, 243, 406
SfaNI	GCATC	1 cut(s)	126
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	401
Sse9I	AATT	2 cut(s)	100, 204
SspMI	CTAG	1 cut(s)	182
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	1 cut(s)	339
TasI	AATT	2 cut(s)	100, 204
TfiI	GAWTC	2 cut(s)	215, 255
Tru1I	TTAA	4 cut(s)	30, 161, 203, 299
Tru9I	TTAA	4 cut(s)	30, 161, 203, 299
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	3 cut(s)	143, 146, 233
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	361
Tth111I	GACNNNGTC	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	401
VspI	ATTAAT	1 cut(s)	30
XceI	RCATGY	1 cut(s)	376
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.