Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000629

Physical Location & Seq

Genomic Coordinates Reverse (-)

36592848 .. 36593964

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G026590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCAGACTGCAGCAAAGAGCAATCTGAAAACAGTTTCACTTGAACTAAGGGGCAAGTCACCCCTTTTAATTTTTGATGATGCTGATGTCGACAAGGCTGCTGACCTTGCTCTCTTGGGAATCGTCTACAACAAGGGAGAAATTTTTGTGACCAGTTCTCGAGTCTTTGTTCAAGAAGGAATTTATGATGAACTTGTGAAGAAGTTGCAAGTGAAGGCAAAGGATTGGGTTGTTGGGGTTCCTTTTGATCCTATTATTCATCAAGGACCCCAGTTTGAGAAAATCTTGACCTACATTGAGCAGGGGAAAAGAGAAGGAGAAACTTTGTTAACAGGAGGAAAGCCTGTGGGGAAGAAGGGTTATTACATTGAGCCAACAGTATTCACTGATGTCAAGGATGATATGCTTATTGCTAAGGATGAAATATTTGGACCTGTAATGTCGCTAATGAAGTTCAAGACCATTGAGGAGGGAGTAGAGAGAGCCAACAACACCAAGTATGGCCTAGCTGCATGCATTGTAACCAAGAACATCATGTGGCTAACACCGTCTCAAGGTCAATCCGCGCAGGCATTATATGGATCAACTGTTACTTTGCCTTCGACCCCGATTGCCATTATGGAGGATACAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

211

Amino Acids

23.28

Weight (kDa)

5.59

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	3 - 178	5.8e-58	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24503
fragaria_vesca	FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05090 FvH4_1g05100
malus_domestica	MD02G1049700.v1.1 MD02G1049800.v1.1 MD02G1049900.v1.1 MD02G1050000.v1.1 MD15G1187300.v1.1
prunus_persica	Prupe.7G229100_v2.0.a1 Prupe.7G229100_v2.0.a1
pyrus_communis	pycom02g04120 pycom15g16790
rosa_chinensis	RchiOBHm_Chr2g0090721 RchiOBHm_Chr2g0090731 RchiOBHm_Chr2g0090741 RchiOBHm_Chr3g0491911 RchiOBHm_Chr3g0491951 RchiOBHm_Chr3g0491981
rosa_laevigata	RLG00000016137 RLG00000016138 RLG00000016139 RLG00000022800 RLG00000022801 RLG00000022808 RLG00000022810 RLG00000022817
rosa_multiflora	Rmu_sc0004195.1_g000003 Rmu_ssc0000367.1_g000002 Rmu_ssc0000367.1_g000003
rosa_roxburghii	Rroxscaffold_2G00150860 Rroxscaffold_2G00150870 Rroxscaffold_2G00150880 Rroxscaffold_6G00390770 Rroxscaffold_6G00392670
rosa_rugosa	Rorug02G0009900 Rorug02G0010000 Rorug02G0010100 Rorug02G0010200 Rorug03G0250900 Rorug03G0250900 Rorug03G0290800
rosa_samantha	Rh2AG056000 Rh2BG054400 Rh2BG054800 Rh2CG056700 Rh2CG056800 Rh2CG057100 Rh2DG055500 Rh2DG055700 Rh3AG300500 Rh3AG300700 Rh3AG300800 Rh3AG300900 Rh3BG336800 Rh3BG337100 Rh3CG334100 Rh3CG334200 Rh3DG336000 Rh3DG336300 Rh3DG336400 Rh3DG336500
rosa_wichuraiana	Rw2G004650 Rw2G004660 Rw3G026580 Rw3G026590 Rw3G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	90, 126
AccII	CGCG	1 cut(s)	566
AciI	CCGC	1 cut(s)	564
AclWI	GGATC	2 cut(s)	242, 589
AcsI	RAATTY	2 cut(s)	141, 180
AfiI	CCNNNNNNNGG	1 cut(s)	554
AgsI	TTSAA	3 cut(s)	44, 173, 457
AluBI	AGCT	1 cut(s)	509
AluI	AGCT	1 cut(s)	509
Alw26I	GTCTC	1 cut(s)	555
AlwI	GGATC	2 cut(s)	242, 589
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	1 cut(s)	502
ApeKI	GCWGC	3 cut(s)	11, 98, 509
ApoI	RAATTY	2 cut(s)	141, 180
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	2 cut(s)	266, 431
AsuHPI	GGTGA	1 cut(s)	51
AvaI	CYCGRG	1 cut(s)	159
AvaII	GGWCC	2 cut(s)	266, 431
BarI	GAAGNNNNNNTAC	2 cut(s)	347, 379
BbvI	GCAGC	3 cut(s)	23, 85, 496
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciVI	GTATCC	1 cut(s)	619
BcoDI	GTCTC	1 cut(s)	555
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	619
BisI	GCNGC	3 cut(s)	12, 99, 510
BlsI	GCNGC	3 cut(s)	13, 100, 511
Bme18I	GGWCC	2 cut(s)	266, 431
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	266, 431
BmiI	GGNNCC	2 cut(s)	240, 268
BmrI	ACTGGG	1 cut(s)	265
BmsI	GCATC	1 cut(s)	70
BmuI	ACTGGG	1 cut(s)	265
Bpu10I	CCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	537
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse1I	ACTGG	2 cut(s)	153, 271
BseGI	GGATG	2 cut(s)	403, 424
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseNI	ACTGG	2 cut(s)	153, 271
BseRI	GAGGAG	1 cut(s)	482
BseXI	GCAGC	3 cut(s)	23, 85, 496
Bsh1236I	CGCG	1 cut(s)	566
BshFI	GGCC	1 cut(s)	504
BsiHKCI	CYCGRG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmAI	GTCTC	1 cut(s)	555
BsmBI	CGTCTC	1 cut(s)	555
BsnI	GGCC	1 cut(s)	504
BsoBI	CYCGRG	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	247, 581
BspACI	CCGC	1 cut(s)	564
BspANI	GGCC	1 cut(s)	504
BspFNI	CGCG	1 cut(s)	566
BspLI	GGNNCC	2 cut(s)	240, 268
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	2 cut(s)	242, 589
BsrI	ACTGG	2 cut(s)	153, 271
BssMI	GATC	2 cut(s)	247, 581
Bst4CI	ACNGT	4 cut(s)	34, 379, 549, 589
BstC8I	GCNNGC	2 cut(s)	514, 570
BstDEI	CTNAG	2 cut(s)	47, 414
BstF5I	GGATG	2 cut(s)	403, 424
BstFNI	CGCG	1 cut(s)	566
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	2 cut(s)	250, 584
BstMAI	GTCTC	1 cut(s)	555
BstMBI	GATC	2 cut(s)	247, 581
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	516
BstSFI	CTRYAG	1 cut(s)	9
BstUI	CGCG	1 cut(s)	566
BstV1I	GCAGC	3 cut(s)	23, 85, 496
BsuI	GTATCC	1 cut(s)	619
BsuRI	GGCC	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	403, 424
BtsIMutI	CAGTG	1 cut(s)	384
Cac8I	GCNNGC	2 cut(s)	514, 570
CfoI	GCGC	1 cut(s)	568
Cfr13I	GGNCC	2 cut(s)	266, 431
CviAII	CATG	2 cut(s)	513, 535
CviJI	RGCY	7 cut(s)	98, 343, 373, 485, 504, 509, 541
CviKI_1	RGCY	7 cut(s)	98, 343, 373, 485, 504, 509, 541
DdeI	CTNAG	2 cut(s)	47, 414
DpnI	GATC	2 cut(s)	249, 583
DpnII	GATC	2 cut(s)	247, 581
Eco47I	GGWCC	2 cut(s)	266, 431
Eco88I	CYCGRG	1 cut(s)	159
EcoO109I	RGGNCCY	1 cut(s)	266
EcoT22I	ATGCAT	1 cut(s)	518
Esp3I	CGTCTC	1 cut(s)	555
FaeI	CATG	2 cut(s)	516, 538
FaiI	YATR	8 cut(s)	186, 404, 501, 514, 536, 577, 579, 620
FatI	CATG	2 cut(s)	512, 534
FblI	GTMKAC	2 cut(s)	90, 126
Fnu4HI	GCNGC	3 cut(s)	12, 99, 510
FokI	GGATG	2 cut(s)	410, 431
Fsp4HI	GCNGC	3 cut(s)	12, 99, 510
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	3 cut(s)	12, 99, 510
HaeIII	GGCC	1 cut(s)	504
HhaI	GCGC	1 cut(s)	568
Hin1II	CATG	2 cut(s)	516, 538
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	2 cut(s)	91, 330
HindII	GTYRAC	2 cut(s)	91, 330
HinfI	GANTC	2 cut(s)	120, 162
HpaI	GTTAAC	1 cut(s)	330
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	3 cut(s)	91, 127, 330
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	4 cut(s)	159, 173, 286, 457
Hpy8I	GTNNAC	3 cut(s)	91, 127, 330
HpyAV	CCTTC	5 cut(s)	170, 208, 308, 349, 609
HpyCH4III	ACNGT	4 cut(s)	34, 379, 549, 589
HpyCH4V	TGCA	5 cut(s)	4, 11, 208, 512, 516
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	2 cut(s)	47, 414
Hsp92II	CATG	2 cut(s)	516, 538
HspAI	GCGC	1 cut(s)	566
KspAI	GTTAAC	1 cut(s)	330
Kzo9I	GATC	2 cut(s)	247, 581
LpnPI	CCDG	7 cut(s)	166, 284, 287, 318, 357, 447, 554
Lsp1109I	GCAGC	3 cut(s)	23, 85, 496
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	506
MaeIII	GTNAC	4 cut(s)	57, 148, 520, 589
MalI	GATC	2 cut(s)	249, 583
MboI	GATC	2 cut(s)	247, 581
MboII	GAAGA	2 cut(s)	211, 364
MluCI	AATT	3 cut(s)	69, 141, 180
MlyI	GAGTC	1 cut(s)	171
MnlI	CCTC	4 cut(s)	329, 460, 463, 616
Mph1103I	ATGCAT	1 cut(s)	518
MseI	TTAA	2 cut(s)	68, 329
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	2 cut(s)	247, 581
NlaIII	CATG	2 cut(s)	516, 538
NlaIV	GGNNCC	2 cut(s)	240, 268
NmuCI	GTSAC	2 cut(s)	57, 148
NsiI	ATGCAT	1 cut(s)	518
NspI	RCATGY	1 cut(s)	516
PaeI	GCATGC	1 cut(s)	516
PaeR7I	CTCGAG	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	120
PkrI	GCNGC	3 cut(s)	13, 100, 511
PleI	GAGTC	1 cut(s)	170
PpsI	GAGTC	1 cut(s)	170
PpuMI	RGGWCCY	1 cut(s)	266
Psp5II	RGGWCCY	1 cut(s)	266
PspN4I	GGNNCC	2 cut(s)	240, 268
PspPI	GGNCC	2 cut(s)	266, 431
PspPPI	RGGWCCY	1 cut(s)	266
PstI	CTGCAG	1 cut(s)	13
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	68, 329
SatI	GCNGC	3 cut(s)	12, 99, 510
Sau3AI	GATC	2 cut(s)	247, 581
Sau96I	GGNCC	2 cut(s)	266, 431
SchI	GAGTC	1 cut(s)	171
SetI	ASST	5 cut(s)	108, 293, 436, 511, 559
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	9
Sfr274I	CTCGAG	1 cut(s)	159
SinI	GGWCC	2 cut(s)	266, 431
SlaI	CTCGAG	1 cut(s)	159
SmlI	CTYRAG	2 cut(s)	159, 552
SmoI	CTYRAG	2 cut(s)	159, 552
SphI	GCATGC	1 cut(s)	516
Sse9I	AATT	3 cut(s)	69, 141, 180
SsiI	CCGC	1 cut(s)	564
SspI	AATATT	1 cut(s)	426
SspMI	CTAG	1 cut(s)	506
TaaI	ACNGT	4 cut(s)	34, 379, 549, 589
TaqI	TCGA	3 cut(s)	90, 160, 602
TasI	AATT	3 cut(s)	69, 141, 180
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	2 cut(s)	68, 329
Tru9I	TTAA	2 cut(s)	68, 329
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	2 cut(s)	57, 148
TseI	GCWGC	3 cut(s)	11, 98, 509
Tsp45I	GTSAC	2 cut(s)	57, 148
TspDTI	ATGAA	4 cut(s)	204, 248, 435, 464
TspRI	CASTG	1 cut(s)	391
VpaK11BI	GGWCC	2 cut(s)	266, 431
XapI	RAATTY	2 cut(s)	141, 180
XceI	RCATGY	1 cut(s)	516
XhoI	CTCGAG	1 cut(s)	159
XmiI	GTMKAC	2 cut(s)	90, 126
XspI	CTAG	1 cut(s)	506
Zsp2I	ATGCAT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.