Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000629

Physical Location & Seq

Genomic Coordinates Reverse (-)

37258223 .. 37259408

Gene Structure 1186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG334200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCACGAACAGTGCTCTGGGGCAAGTCAACCCCTTTTAATTTTTAATGATGCTGATGTCGACAAGGCTGCTGGCCTTGCTCTCTTGGGAATCCTCTACTACAACAAGGGAGAAATTTGTGTGACCAGTTCTCGAGTCTTTGTTCAAGAAGGAATTTATGATGAACTTGTGAAGAAGTTGCAAGTGAAGGCAAAGGATTGGGTTGTTGGGGATCCTTTTGATCCTATTGTTCATCAAGGACCCCAGAGAGGAGCAACTTTGTTAACAGGAGGAAAGCCTGTAGGGAAGAAGGGTTATTACATTGAGCCAACAGTATTCACTGTAGTCAAGGATGATATGCTTATTGCCAAGGATGACATATTCGGACCTGTAATGTCGCTAATGAAGTTCAAGACCATTGAGGAGGGAGTAGCGAGAGCCAACAATACCAAGTATGGCCTAGCTGCAGGCATTGTAACCAAGAACATCATGTGGCTAACACCGTCTCAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

164

Amino Acids

17.92

Weight (kDa)

6.12

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	7 - 82	2.1e-17	Aldehyde dehydrogenase family
Aldedh	PF00171	77 - 156	4.9e-27	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24503
fragaria_vesca	FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05090 FvH4_1g05100
malus_domestica	MD02G1049700.v1.1 MD02G1049800.v1.1 MD02G1049900.v1.1 MD02G1050000.v1.1 MD15G1187300.v1.1
prunus_persica	Prupe.7G229100_v2.0.a1 Prupe.7G229100_v2.0.a1
pyrus_communis	pycom02g04120 pycom15g16790
rosa_chinensis	RchiOBHm_Chr2g0090721 RchiOBHm_Chr2g0090731 RchiOBHm_Chr2g0090741 RchiOBHm_Chr3g0491911 RchiOBHm_Chr3g0491951 RchiOBHm_Chr3g0491981
rosa_laevigata	RLG00000016137 RLG00000016138 RLG00000016139 RLG00000022800 RLG00000022801 RLG00000022808 RLG00000022810 RLG00000022817
rosa_multiflora	Rmu_sc0004195.1_g000003 Rmu_ssc0000367.1_g000002 Rmu_ssc0000367.1_g000003
rosa_roxburghii	Rroxscaffold_2G00150860 Rroxscaffold_2G00150870 Rroxscaffold_2G00150880 Rroxscaffold_6G00390770 Rroxscaffold_6G00392670
rosa_rugosa	Rorug02G0009900 Rorug02G0010000 Rorug02G0010100 Rorug02G0010200 Rorug03G0250900 Rorug03G0250900 Rorug03G0290800
rosa_samantha	Rh2AG056000 Rh2BG054400 Rh2BG054800 Rh2CG056700 Rh2CG056800 Rh2CG057100 Rh2DG055500 Rh2DG055700 Rh3AG300500 Rh3AG300700 Rh3AG300800 Rh3AG300900 Rh3BG336800 Rh3BG337100 Rh3CG334100 Rh3CG334200 Rh3DG336000 Rh3DG336300 Rh3DG336400 Rh3DG336500
rosa_wichuraiana	Rw2G004650 Rw2G004660 Rw3G026580 Rw3G026590 Rw3G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	60
AclWI	GGATC	3 cut(s)	206, 215, 219
AcsI	RAATTY	2 cut(s)	114, 153
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	2 cut(s)	146, 391
AluBI	AGCT	1 cut(s)	443
AluI	AGCT	1 cut(s)	443
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	3 cut(s)	206, 215, 219
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	2 cut(s)	73, 436
ApeKI	GCWGC	2 cut(s)	68, 443
ApoI	RAATTY	2 cut(s)	114, 153
AspS9I	GGNCC	2 cut(s)	239, 365
AvaI	CYCGRG	1 cut(s)	132
AvaII	GGWCC	2 cut(s)	239, 365
BamHI	GGATCC	1 cut(s)	211
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	2 cut(s)	55, 430
BcgI	CGANNNNNNTGC	2 cut(s)	50, 84
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	3 cut(s)	279, 321, 444
BisI	GCNGC	2 cut(s)	69, 444
BlsI	GCNGC	2 cut(s)	70, 445
Bme18I	GGWCC	2 cut(s)	239, 365
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	2 cut(s)	239, 365
BmiI	GGNNCC	2 cut(s)	213, 241
BmsI	GCATC	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	2 cut(s)	337, 358
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	2 cut(s)	264, 416
BseXI	GCAGC	2 cut(s)	55, 430
BshFI	GGCC	2 cut(s)	75, 438
BsiHKAI	GWGCWC	1 cut(s)	17
BsiHKCI	CYCGRG	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	489
BsmBI	CGTCTC	1 cut(s)	489
BsnI	GGCC	2 cut(s)	75, 438
BsoBI	CYCGRG	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	211, 220
BspANI	GGCC	2 cut(s)	75, 438
BspLI	GGNNCC	2 cut(s)	213, 241
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	3 cut(s)	206, 215, 219
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	2 cut(s)	211, 220
BssT1I	CCWWGG	1 cut(s)	348
Bst4CI	ACNGT	4 cut(s)	12, 313, 322, 483
BstC8I	GCNNGC	2 cut(s)	73, 448
BstF5I	GGATG	2 cut(s)	337, 358
BstKTI	GATC	2 cut(s)	214, 223
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	2 cut(s)	211, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstSFI	CTRYAG	3 cut(s)	279, 321, 444
BstV1I	GCAGC	2 cut(s)	55, 430
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	75, 438
BtsCI	GGATG	2 cut(s)	337, 358
BtsIMutI	CAGTG	2 cut(s)	17, 318
Cac8I	GCNNGC	2 cut(s)	73, 448
Cfr13I	GGNCC	2 cut(s)	239, 365
CviAII	CATG	1 cut(s)	469
CviJI	RGCY	8 cut(s)	68, 75, 277, 307, 419, 438, 443, 475
CviKI_1	RGCY	8 cut(s)	68, 75, 277, 307, 419, 438, 443, 475
DpnI	GATC	2 cut(s)	213, 222
DpnII	GATC	2 cut(s)	211, 220
Eco130I	CCWWGG	1 cut(s)	348
Eco47I	GGWCC	2 cut(s)	239, 365
Eco88I	CYCGRG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	489
FaeI	CATG	1 cut(s)	472
FaiI	YATR	5 cut(s)	159, 338, 359, 435, 470
FatI	CATG	1 cut(s)	468
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	69, 444
FokI	GGATG	2 cut(s)	344, 365
Fsp4HI	GCNGC	2 cut(s)	69, 444
FspBI	CTAG	1 cut(s)	440
GluI	GCNGC	2 cut(s)	69, 444
HaeIII	GGCC	2 cut(s)	75, 438
Hin1II	CATG	1 cut(s)	472
HincII	GTYRAC	3 cut(s)	29, 61, 264
HindII	GTYRAC	3 cut(s)	29, 61, 264
HinfI	GANTC	2 cut(s)	90, 135
HpaI	GTTAAC	1 cut(s)	264
Hpy166II	GTNNAC	3 cut(s)	29, 61, 264
Hpy188I	TCNGA	1 cut(s)	365
Hpy188III	TCNNGA	4 cut(s)	132, 146, 391, 488
Hpy8I	GTNNAC	3 cut(s)	29, 61, 264
HpyAV	CCTTC	3 cut(s)	143, 181, 283
HpyCH4III	ACNGT	4 cut(s)	12, 313, 322, 483
HpyCH4V	TGCA	3 cut(s)	4, 181, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	472
KspAI	GTTAAC	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	211, 220
LmnI	GCTCC	1 cut(s)	251
LpnPI	CCDG	8 cut(s)	3, 57, 139, 252, 257, 291, 381, 432
Lsp1109I	GCAGC	2 cut(s)	55, 430
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	440
MaeIII	GTNAC	2 cut(s)	121, 454
MalI	GATC	2 cut(s)	213, 222
MboI	GATC	2 cut(s)	211, 220
MboII	GAAGA	2 cut(s)	184, 298
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	3 cut(s)	39, 114, 153
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	5 cut(s)	104, 242, 263, 394, 397
MseI	TTAA	4 cut(s)	38, 45, 263, 493
MwoI	GCNNNNNNNGC	1 cut(s)	77
NdeII	GATC	2 cut(s)	211, 220
NlaIII	CATG	1 cut(s)	472
NlaIV	GGNNCC	2 cut(s)	213, 241
NmuCI	GTSAC	1 cut(s)	121
PaeR7I	CTCGAG	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	70, 445
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PpuMI	RGGWCCY	1 cut(s)	239
Psp5II	RGGWCCY	1 cut(s)	239
PspN4I	GGNNCC	2 cut(s)	213, 241
PspPI	GGNCC	2 cut(s)	239, 365
PspPPI	RGGWCCY	1 cut(s)	239
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	211
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	4 cut(s)	38, 45, 263, 493
SatI	GCNGC	2 cut(s)	69, 444
Sau3AI	GATC	2 cut(s)	211, 220
Sau96I	GGNCC	2 cut(s)	239, 365
SchI	GAGTC	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	2 cut(s)	370, 445
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	3 cut(s)	279, 321, 444
Sfr274I	CTCGAG	1 cut(s)	132
SinI	GGWCC	2 cut(s)	239, 365
SlaI	CTCGAG	1 cut(s)	132
SmlI	CTYRAG	2 cut(s)	132, 486
SmoI	CTYRAG	2 cut(s)	132, 486
Sse9I	AATT	3 cut(s)	39, 114, 153
SspMI	CTAG	1 cut(s)	440
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	4 cut(s)	12, 313, 322, 483
TaqI	TCGA	2 cut(s)	60, 133
TasI	AATT	3 cut(s)	39, 114, 153
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	4 cut(s)	38, 45, 263, 493
Tru9I	TTAA	4 cut(s)	38, 45, 263, 493
TscAI	CASTG	2 cut(s)	17, 325
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	2 cut(s)	68, 443
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	3 cut(s)	177, 221, 398
TspRI	CASTG	2 cut(s)	17, 325
VpaK11BI	GGWCC	2 cut(s)	239, 365
XapI	RAATTY	2 cut(s)	114, 153
XhoI	CTCGAG	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.