Aldehyde dehydrogenase family
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2997 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2894 |
| Acc36I | ACCTGC | 1 cut(s) | 595 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 715, 2215 |
| AccI | GTMKAC | 5 cut(s) | 99, 369, 858, 1869, 2358 |
| AciI | CCGC | 7 cut(s) | 197, 216, 1348, 1390, 1715, 2848, 2852 |
| AclWI | GGATC | 8 cut(s) | 128, 1001, 1010, 1014, 1373, 2501, 2510, 2873 |
| AcoI | YGGCCR | 7 cut(s) | 315, 918, 1504, 1695, 1815, 2257, 2823 |
| AcsI | RAATTY | 9 cut(s) | 92, 423, 514, 909, 948, 1592, 1923, 2014, 2409 |
| AfaI | GTAC | 3 cut(s) | 396, 660, 2026 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 143, 715, 1406, 1643, 2215, 2906 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1441 |
| AjiI | CACGTC | 2 cut(s) | 187, 1687 |
| AjnI | CCWGG | 6 cut(s) | 192, 509, 1038, 1733, 2538, 3005 |
| Alw21I | GWGCWC | 3 cut(s) | 459, 1941, 2163 |
| Alw26I | GTCTC | 8 cut(s) | 119, 1339, 1428, 1479, 1619, 2180, 2839, 2928 |
| AlwI | GGATC | 8 cut(s) | 128, 1001, 1010, 1014, 1373, 2501, 2510, 2873 |
| Ama87I | CYCGRG | 1 cut(s) | 927 |
| ApaI | GGGCCC | 1 cut(s) | 1734 |
| ApoI | RAATTY | 9 cut(s) | 92, 423, 514, 909, 948, 1592, 1923, 2014, 2409 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 347, 1847 |
| AspLEI | GCGC | 8 cut(s) | 215, 254, 613, 1352, 1715, 1754, 1953, 2852 |
| AspS9I | GGNCC | 9 cut(s) | 190, 230, 1034, 1214, 1730, 1731, 2534, 2714, 2950 |
| AsuC2I | CCSGG | 4 cut(s) | 145, 249, 1749, 1840 |
| AvaI | CYCGRG | 1 cut(s) | 927 |
| AvaII | GGWCC | 5 cut(s) | 190, 1034, 1214, 2534, 2714 |
| AxyI | CCTNAGG | 2 cut(s) | 378, 1878 |
| BaeGI | GKGCMC | 2 cut(s) | 1734, 2858 |
| BalI | TGGCCA | 5 cut(s) | 317, 920, 1506, 1817, 2825 |
| BamHI | GGATCC | 1 cut(s) | 1006 |
| BanII | GRGCYC | 2 cut(s) | 459, 1734 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1130, 1162, 2630, 2662 |
| BauI | CACGAG | 1 cut(s) | 2427 |
| BbsI | GAAGAC | 2 cut(s) | 189, 1689 |
| Bbv12I | GWGCWC | 3 cut(s) | 459, 1941, 2163 |
| BccI | CCATC | 5 cut(s) | 633, 647, 717, 2210, 2217 |
| BceAI | ACGGC | 4 cut(s) | 686, 1682, 1850, 2244 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 848, 882 |
| BciT130I | CCWGG | 6 cut(s) | 194, 511, 1040, 1735, 2540, 3007 |
| BciVI | GTATCC | 4 cut(s) | 319, 1403, 1819, 2903 |
| BclI | TGATCA | 1 cut(s) | 2455 |
| BcnI | CCSGG | 4 cut(s) | 145, 249, 1749, 1840 |
| BcoDI | GTCTC | 8 cut(s) | 119, 1339, 1428, 1479, 1619, 2180, 2839, 2928 |
| BfaI | CTAG | 5 cut(s) | 815, 1289, 1478, 2315, 2789 |
| BfmI | CTRYAG | 4 cut(s) | 27, 366, 777, 1293 |
| BfoI | RGCGCY | 3 cut(s) | 255, 614, 1755 |
| BfuAI | ACCTGC | 1 cut(s) | 595 |
| BfuI | GTATCC | 4 cut(s) | 319, 1403, 1819, 2903 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 629 |
| BglII | AGATCT | 1 cut(s) | 2840 |
| BlpI | GCTNAGC | 1 cut(s) | 591 |
| BmcAI | AGTACT | 1 cut(s) | 660 |
| Bme18I | GGWCC | 5 cut(s) | 190, 1034, 1214, 2534, 2714 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1441 |
| BmeT110I | CYCGRG | 1 cut(s) | 927 |
| BmgBI | CACGTC | 2 cut(s) | 187, 1687 |
| BmgT120I | GGNCC | 9 cut(s) | 190, 230, 1034, 1214, 1730, 1731, 2534, 2714, 2950 |
| BmiI | GGNNCC | 6 cut(s) | 745, 1008, 1036, 1732, 2245, 2536 |
| BmrI | ACTGGG | 1 cut(s) | 2016 |
| BmsI | GCATC | 7 cut(s) | 42, 325, 759, 838, 1542, 1825, 2338 |
| BmuI | ACTGGG | 1 cut(s) | 2016 |
| BoxI | GACNNNNGTC | 1 cut(s) | 756 |
| BpiI | GAAGAC | 2 cut(s) | 189, 1689 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1923, 1955 |
| Bpu10I | CCTNAGC | 3 cut(s) | 540, 556, 2040 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 591 |
| BpuEI | CTTGAG | 2 cut(s) | 1321, 2821 |
| BpuMI | CCSGG | 4 cut(s) | 145, 249, 1749, 1840 |
| Bsa29I | ATCGAT | 2 cut(s) | 1317, 2817 |
| BsaI | GGTCTC | 1 cut(s) | 119 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 81, 111, 1581, 1611 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 143, 715, 1406, 1643, 2215, 2906 |
| Bse118I | RCCGGY | 2 cut(s) | 407, 2795 |
| Bse1I | ACTGG | 8 cut(s) | 318, 679, 745, 921, 1818, 2022, 2179, 2245 |
| Bse21I | CCTNAGG | 2 cut(s) | 378, 1878 |
| BseBI | CCWGG | 6 cut(s) | 194, 511, 1040, 1735, 2540, 3007 |
| BseCI | ATCGAT | 2 cut(s) | 1317, 2817 |
| BseGI | GGATG | 4 cut(s) | 1186, 1207, 2686, 2707 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 143, 715, 1406, 1643, 2215, 2906 |
| BseMII | CTCAG | 7 cut(s) | 123, 246, 392, 582, 1746, 1892, 2262 |
| BseNI | ACTGG | 8 cut(s) | 318, 679, 745, 921, 1818, 2022, 2179, 2245 |
| BseRI | GAGGAG | 3 cut(s) | 276, 1265, 2765 |
| BseSI | GKGCMC | 2 cut(s) | 1734, 2858 |
| BseX3I | CGGCCG | 1 cut(s) | 2257 |
| BseYI | CCCAGC | 2 cut(s) | 338, 521 |
| BsgI | GTGCAG | 4 cut(s) | 192, 432, 1692, 1932 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1390, 2260 |
| BshVI | ATCGAT | 2 cut(s) | 1317, 2817 |
| BsiEI | CGRYCG | 2 cut(s) | 1390, 2260 |
| BsiHKAI | GWGCWC | 3 cut(s) | 459, 1941, 2163 |
| BsiHKCI | CYCGRG | 1 cut(s) | 927 |
| BsiSI | CCGG | 6 cut(s) | 144, 249, 408, 1749, 1839, 2796 |
| BslFI | GGGAC | 1 cut(s) | 2882 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 143, 715, 1406, 1643, 2215, 2906 |
| BsmAI | GTCTC | 8 cut(s) | 119, 1339, 1428, 1479, 1619, 2180, 2839, 2928 |
| BsmBI | CGTCTC | 2 cut(s) | 1339, 1619 |
| BsmFI | GGGAC | 1 cut(s) | 2882 |
| Bso31I | GGTCTC | 1 cut(s) | 119 |
| BsoBI | CYCGRG | 1 cut(s) | 927 |
| Bsp120I | GGGCCC | 1 cut(s) | 1730 |
| Bsp1286I | GDGCHC | 5 cut(s) | 459, 1734, 1941, 2163, 2858 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 591 |
| Bsp19I | CCATGG | 1 cut(s) | 2009 |
| BspACI | CCGC | 7 cut(s) | 197, 216, 1348, 1390, 1715, 2848, 2852 |
| BspCNI | CTCAG | 7 cut(s) | 122, 247, 391, 583, 1747, 1891, 2261 |
| BspDI | ATCGAT | 2 cut(s) | 1317, 2817 |
| BspLI | GGNNCC | 6 cut(s) | 745, 1008, 1036, 1732, 2245, 2536 |
| BspMAI | CTGCAG | 3 cut(s) | 31, 781, 1297 |
| BspMI | ACCTGC | 1 cut(s) | 595 |
| BspPI | GGATC | 8 cut(s) | 128, 1001, 1010, 1014, 1373, 2501, 2510, 2873 |
| BspQI | GCTCTTC | 2 cut(s) | 83, 1583 |
| BspTNI | GGTCTC | 1 cut(s) | 119 |
| BsrFI | RCCGGY | 2 cut(s) | 407, 2795 |
| BsrI | ACTGG | 8 cut(s) | 318, 679, 745, 921, 1818, 2022, 2179, 2245 |
| BssAI | RCCGGY | 2 cut(s) | 407, 2795 |
| BssSI | CACGAG | 1 cut(s) | 2427 |
| BssT1I | CCWWGG | 5 cut(s) | 233, 460, 1197, 2009, 2055 |
| Bst2BI | CACGAG | 1 cut(s) | 2427 |
| Bst2UI | CCWGG | 6 cut(s) | 194, 511, 1040, 1735, 2540, 3007 |
| Bst4CI | ACNGT | 7 cut(s) | 331, 1056, 1162, 1333, 1831, 2662, 2833 |
| Bst6I | CTCTTC | 6 cut(s) | 83, 1426, 1530, 1583, 2399, 2926 |
| BstDSI | CCRYGG | 4 cut(s) | 747, 1726, 2009, 2697 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1404, 2904 |
| BstF5I | GGATG | 4 cut(s) | 1186, 1207, 2686, 2707 |
| BstH2I | RGCGCY | 3 cut(s) | 255, 614, 1755 |
| BstHHI | GCGC | 8 cut(s) | 215, 254, 613, 1352, 1715, 1754, 1953, 2852 |
| BstMAI | GTCTC | 8 cut(s) | 119, 1339, 1428, 1479, 1619, 2180, 2839, 2928 |
| BstMCI | CGRYCG | 2 cut(s) | 1390, 2260 |
| BstNI | CCWGG | 6 cut(s) | 194, 511, 1040, 1735, 2540, 3007 |
| BstNSI | RCATGY | 3 cut(s) | 1189, 1530, 2689 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 756 |
| BstSFI | CTRYAG | 4 cut(s) | 27, 366, 777, 1293 |
| BstSLI | GKGCMC | 2 cut(s) | 1734, 2858 |
| BstV2I | GAAGAC | 2 cut(s) | 189, 1689 |
| BstX2I | RGATCY | 4 cut(s) | 133, 1006, 2506, 2840 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1514 |
| BstYI | RGATCY | 4 cut(s) | 133, 1006, 2506, 2840 |
| BstZI | CGGCCG | 1 cut(s) | 2257 |
| Bsu15I | ATCGAT | 2 cut(s) | 1317, 2817 |
| Bsu36I | CCTNAGG | 2 cut(s) | 378, 1878 |
| BsuI | GTATCC | 4 cut(s) | 319, 1403, 1819, 2903 |
| BsuTUI | ATCGAT | 2 cut(s) | 1317, 2817 |
| BtgI | CCRYGG | 4 cut(s) | 747, 1726, 2009, 2697 |
| BtrI | CACGTC | 2 cut(s) | 187, 1687 |
| BtsCI | GGATG | 4 cut(s) | 1186, 1207, 2686, 2707 |
| BtsIMutI | CAGTG | 5 cut(s) | 1167, 1226, 2172, 2667, 2829 |
| BveI | ACCTGC | 1 cut(s) | 595 |
| CfoI | GCGC | 8 cut(s) | 215, 254, 613, 1352, 1715, 1754, 1953, 2852 |
| Cfr10I | RCCGGY | 2 cut(s) | 407, 2795 |
| Cfr13I | GGNCC | 9 cut(s) | 190, 230, 1034, 1214, 1730, 1731, 2534, 2714, 2950 |
| ClaI | ATCGAT | 2 cut(s) | 1317, 2817 |
| CseI | GACGC | 1 cut(s) | 1431 |
| Csp6I | GTAC | 3 cut(s) | 395, 659, 2025 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1402, 1437, 2902, 2937 |
| CviQI | GTAC | 3 cut(s) | 395, 659, 2025 |
| DraI | TTTAAA | 2 cut(s) | 795, 2295 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2894 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1441 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2894 |
| EaeI | YGGCCR | 7 cut(s) | 315, 918, 1504, 1695, 1815, 2257, 2823 |
| EagI | CGGCCG | 1 cut(s) | 2257 |
| Eam1104I | CTCTTC | 6 cut(s) | 83, 1426, 1530, 1583, 2399, 2926 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1441 |
| EarI | CTCTTC | 6 cut(s) | 83, 1426, 1530, 1583, 2399, 2926 |
| Ecl136II | GAGCTC | 1 cut(s) | 457 |
| EclXI | CGGCCG | 1 cut(s) | 2257 |
| Eco130I | CCWWGG | 5 cut(s) | 233, 460, 1197, 2009, 2055 |
| Eco24I | GRGCYC | 2 cut(s) | 459, 1734 |
| Eco31I | GGTCTC | 1 cut(s) | 119 |
| Eco47I | GGWCC | 5 cut(s) | 190, 1034, 1214, 2534, 2714 |
| Eco52I | CGGCCG | 1 cut(s) | 2257 |
| Eco53kI | GAGCTC | 1 cut(s) | 457 |
| Eco81I | CCTNAGG | 2 cut(s) | 378, 1878 |
| Eco88I | CYCGRG | 1 cut(s) | 927 |
| EcoICRI | GAGCTC | 1 cut(s) | 457 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1404, 2904 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1034, 1731, 2534, 2950 |
| EcoRI | GAATTC | 2 cut(s) | 92, 1592 |
| EcoRII | CCWGG | 6 cut(s) | 192, 509, 1038, 1733, 2538, 3005 |
| EcoT14I | CCWWGG | 5 cut(s) | 233, 460, 1197, 2009, 2055 |
| EcoT38I | GRGCYC | 2 cut(s) | 459, 1734 |
| ErhI | CCWWGG | 5 cut(s) | 233, 460, 1197, 2009, 2055 |
| Esp3I | CGTCTC | 2 cut(s) | 1339, 1619 |
| FaqI | GGGAC | 1 cut(s) | 2882 |
| FauI | CCCGC | 1 cut(s) | 2845 |
| FauNDI | CATATG | 2 cut(s) | 714, 2214 |
| FbaI | TGATCA | 1 cut(s) | 2455 |
| FblI | GTMKAC | 5 cut(s) | 99, 369, 858, 1869, 2358 |
| FokI | GGATG | 4 cut(s) | 1193, 1214, 2693, 2714 |
| FriOI | GRGCYC | 2 cut(s) | 459, 1734 |
| FspBI | CTAG | 5 cut(s) | 815, 1289, 1478, 2315, 2789 |
| GlaI | GCGC | 8 cut(s) | 214, 253, 612, 1351, 1714, 1753, 1952, 2851 |
| GsaI | CCCAGC | 2 cut(s) | 342, 525 |
| HaeII | RGCGCY | 3 cut(s) | 255, 614, 1755 |
| HapII | CCGG | 6 cut(s) | 144, 249, 408, 1749, 1839, 2796 |
| HgaI | GACGC | 1 cut(s) | 1431 |
| HhaI | GCGC | 8 cut(s) | 215, 254, 613, 1352, 1715, 1754, 1953, 2852 |
| Hin6I | GCGC | 8 cut(s) | 213, 252, 611, 1350, 1713, 1752, 1951, 2850 |
| HinP1I | GCGC | 8 cut(s) | 213, 252, 611, 1350, 1713, 1752, 1951, 2850 |
| HincII | GTYRAC | 5 cut(s) | 100, 859, 2224, 2475, 2613 |
| HindII | GTYRAC | 5 cut(s) | 100, 859, 2224, 2475, 2613 |
| HindIII | AAGCTT | 1 cut(s) | 1962 |
| HinfI | GANTC | 7 cut(s) | 38, 101, 888, 930, 1538, 1601, 2389 |
| HpaI | GTTAAC | 1 cut(s) | 2613 |
| HpaII | CCGG | 6 cut(s) | 144, 249, 408, 1749, 1839, 2796 |
| Hpy188I | TCNGA | 7 cut(s) | 37, 497, 1214, 1534, 1997, 2251, 2714 |
| Hpy99I | CGWCG | 2 cut(s) | 101, 1601 |
| HpyCH4III | ACNGT | 7 cut(s) | 331, 1056, 1162, 1333, 1831, 2662, 2833 |
| HpyCH4IV | ACGT | 7 cut(s) | 186, 397, 470, 753, 1686, 1897, 2220 |
| HpySE526I | ACGT | 7 cut(s) | 186, 397, 470, 753, 1686, 1897, 2220 |
| HspAI | GCGC | 8 cut(s) | 213, 252, 611, 1350, 1713, 1752, 1951, 2850 |
| KroI | GCCGGC | 1 cut(s) | 2795 |
| KroNI | GCCGGC | 1 cut(s) | 2797 |
| Ksp22I | TGATCA | 1 cut(s) | 2455 |
| KspAI | GTTAAC | 1 cut(s) | 2613 |
| LguI | GCTCTTC | 2 cut(s) | 83, 1583 |
| LmnI | GCTCC | 7 cut(s) | 263, 462, 1100, 1535, 1763, 2053, 2600 |
| LweI | GCATC | 7 cut(s) | 42, 325, 759, 838, 1542, 1825, 2338 |
| MaeI | CTAG | 5 cut(s) | 815, 1289, 1478, 2315, 2789 |
| MaeII | ACGT | 7 cut(s) | 186, 397, 470, 753, 1686, 1897, 2220 |
| MaeIII | GTNAC | 9 cut(s) | 398, 703, 825, 1224, 1303, 1898, 2325, 2803, 2983 |
| MfeI | CAATTG | 1 cut(s) | 2745 |
| MflI | RGATCY | 4 cut(s) | 133, 1006, 2506, 2840 |
| MhlI | GDGCHC | 5 cut(s) | 459, 1734, 1941, 2163, 2858 |
| MlsI | TGGCCA | 5 cut(s) | 317, 920, 1506, 1817, 2825 |
| MluNI | TGGCCA | 5 cut(s) | 317, 920, 1506, 1817, 2825 |
| MlyI | GAGTC | 4 cut(s) | 47, 95, 939, 1547 |
| MmeI | TCCRAC | 5 cut(s) | 303, 475, 1803, 1975, 2482 |
| Mox20I | TGGCCA | 5 cut(s) | 317, 920, 1506, 1817, 2825 |
| MroNI | GCCGGC | 1 cut(s) | 2795 |
| MroXI | GAANNNNTTC | 2 cut(s) | 347, 1847 |
| MscI | TGGCCA | 5 cut(s) | 317, 920, 1506, 1817, 2825 |
| MseI | TTAA | 4 cut(s) | 794, 836, 2294, 2612 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1319, 2819 |
| Msp20I | TGGCCA | 5 cut(s) | 317, 920, 1506, 1817, 2825 |
| MspA1I | CMGCKG | 4 cut(s) | 416, 1916, 2063, 2192 |
| MspI | CCGG | 6 cut(s) | 144, 249, 408, 1749, 1839, 2796 |
| MunI | CAATTG | 1 cut(s) | 2745 |
| MvaI | CCWGG | 6 cut(s) | 194, 511, 1040, 1735, 2540, 3007 |
| NaeI | GCCGGC | 1 cut(s) | 2797 |
| NciI | CCSGG | 4 cut(s) | 145, 249, 1749, 1840 |
| NcoI | CCATGG | 1 cut(s) | 2009 |
| NdeI | CATATG | 2 cut(s) | 714, 2214 |
| NgoMIV | GCCGGC | 1 cut(s) | 2795 |
| NlaIV | GGNNCC | 6 cut(s) | 745, 1008, 1036, 1732, 2245, 2536 |
| NmeAIII | GCCGAG | 1 cut(s) | 2116 |
| NmuCI | GTSAC | 5 cut(s) | 703, 825, 1224, 2325, 2983 |
| NspI | RCATGY | 3 cut(s) | 1189, 1530, 2689 |
| PaeI | GCATGC | 1 cut(s) | 1530 |
| PaeR7I | CTCGAG | 1 cut(s) | 927 |
| PciSI | GCTCTTC | 2 cut(s) | 83, 1583 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1602 |
| PdiI | GCCGGC | 1 cut(s) | 2797 |
| PdmI | GAANNNNTTC | 2 cut(s) | 347, 1847 |
| PfeI | GAWTC | 3 cut(s) | 888, 1601, 2389 |
| PflFI | GACNNNGTC | 2 cut(s) | 728, 2228 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 715, 2215 |
| PleI | GAGTC | 4 cut(s) | 46, 95, 938, 1546 |
| PpsI | GAGTC | 4 cut(s) | 46, 95, 938, 1546 |
| PpuMI | RGGWCCY | 2 cut(s) | 1034, 2534 |
| PshAI | GACNNNNGTC | 1 cut(s) | 756 |
| PsiI | TTATAA | 1 cut(s) | 2997 |
| Psp124BI | GAGCTC | 1 cut(s) | 459 |
| Psp5II | RGGWCCY | 2 cut(s) | 1034, 2534 |
| Psp6I | CCWGG | 6 cut(s) | 192, 509, 1038, 1733, 2538, 3005 |
| PspFI | CCCAGC | 2 cut(s) | 338, 521 |
| PspGI | CCWGG | 6 cut(s) | 192, 509, 1038, 1733, 2538, 3005 |
| PspN4I | GGNNCC | 6 cut(s) | 745, 1008, 1036, 1732, 2245, 2536 |
| PspOMI | GGGCCC | 1 cut(s) | 1730 |
| PspPI | GGNCC | 9 cut(s) | 190, 230, 1034, 1214, 1730, 1731, 2534, 2714, 2950 |
| PspPPI | RGGWCCY | 2 cut(s) | 1034, 2534 |
| PstI | CTGCAG | 3 cut(s) | 31, 781, 1297 |
| PsuI | RGATCY | 4 cut(s) | 133, 1006, 2506, 2840 |
| PsyI | GACNNNGTC | 2 cut(s) | 728, 2228 |
| PvuII | CAGCTG | 4 cut(s) | 416, 1916, 2063, 2192 |
| RsaI | GTAC | 3 cut(s) | 396, 660, 2026 |
| RsaNI | GTAC | 3 cut(s) | 395, 659, 2025 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1319, 2819 |
| SacI | GAGCTC | 1 cut(s) | 459 |
| SalI | GTCGAC | 2 cut(s) | 98, 857 |
| SapI | GCTCTTC | 2 cut(s) | 83, 1583 |
| SaqAI | TTAA | 4 cut(s) | 794, 836, 2294, 2612 |
| Sau96I | GGNCC | 9 cut(s) | 190, 230, 1034, 1214, 1730, 1731, 2534, 2714, 2950 |
| ScaI | AGTACT | 1 cut(s) | 660 |
| SchI | GAGTC | 4 cut(s) | 47, 95, 939, 1547 |
| SduI | GDGCHC | 5 cut(s) | 459, 1734, 1941, 2163, 2858 |
| SfaNI | GCATC | 7 cut(s) | 42, 325, 759, 838, 1542, 1825, 2338 |
| SfcI | CTRYAG | 4 cut(s) | 27, 366, 777, 1293 |
| Sfr274I | CTCGAG | 1 cut(s) | 927 |
| SinI | GGWCC | 5 cut(s) | 190, 1034, 1214, 2534, 2714 |
| SlaI | CTCGAG | 1 cut(s) | 927 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1319, 2819 |
| SmlI | CTYRAG | 3 cut(s) | 927, 1336, 2836 |
| SmoI | CTYRAG | 3 cut(s) | 927, 1336, 2836 |
| SphI | GCATGC | 1 cut(s) | 1530 |
| SsiI | CCGC | 7 cut(s) | 197, 216, 1348, 1390, 1715, 2848, 2852 |
| SspI | AATATT | 2 cut(s) | 1209, 2709 |
| SspMI | CTAG | 5 cut(s) | 815, 1289, 1478, 2315, 2789 |
| SstI | GAGCTC | 1 cut(s) | 459 |
| StyI | CCWWGG | 5 cut(s) | 233, 460, 1197, 2009, 2055 |
| TaaI | ACNGT | 7 cut(s) | 331, 1056, 1162, 1333, 1831, 2662, 2833 |
| TaiI | ACGT | 7 cut(s) | 189, 400, 473, 756, 1689, 1900, 2223 |
| TatI | WGTACW | 1 cut(s) | 658 |
| TauI | GCSGC | 2 cut(s) | 218, 1718 |
| TfiI | GAWTC | 3 cut(s) | 888, 1601, 2389 |
| Tru1I | TTAA | 4 cut(s) | 794, 836, 2294, 2612 |
| Tru9I | TTAA | 4 cut(s) | 794, 836, 2294, 2612 |
| TscAI | CASTG | 5 cut(s) | 1174, 1233, 2179, 2674, 2836 |
| TseFI | GTSAC | 5 cut(s) | 703, 825, 1224, 2325, 2983 |
| Tsp45I | GTSAC | 5 cut(s) | 703, 825, 1224, 2325, 2983 |
| TspGWI | ACGGA | 5 cut(s) | 34, 764, 1594, 2169, 2714 |
| TspRI | CASTG | 5 cut(s) | 1174, 1233, 2179, 2674, 2836 |
| Tth111I | GACNNNGTC | 2 cut(s) | 728, 2228 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 715, 2215 |
| VpaK11BI | GGWCC | 5 cut(s) | 190, 1034, 1214, 2534, 2714 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1404, 2904 |
| XapI | RAATTY | 9 cut(s) | 92, 423, 514, 909, 948, 1592, 1923, 2014, 2409 |
| XbaI | TCTAGA | 1 cut(s) | 1477 |
| XceI | RCATGY | 3 cut(s) | 1189, 1530, 2689 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 529 |
| XhoI | CTCGAG | 1 cut(s) | 927 |
| XmiI | GTMKAC | 5 cut(s) | 99, 369, 858, 1869, 2358 |
| XmnI | GAANNNNTTC | 2 cut(s) | 347, 1847 |
| XspI | CTAG | 5 cut(s) | 815, 1289, 1478, 2315, 2789 |
| ZrmI | AGTACT | 1 cut(s) | 660 |