Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000629

Physical Location & Seq

Genomic Coordinates Reverse (-)

37477541 .. 37478620

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG336500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCATGGGATTATGGGAACTGCTTTAGGATCAGTCTTGATTGTGGCGGGGCTCCGTTCTGTTCTTTGGGGGAAGACCAAGGAGACTGCGAAGCTTGAGGGAATGAGGCCAAAGAAACAGACACAAGGAGAAATTTGTGTGACGAGTTCTCGAGTCTTTGTTCAAGAAGGAATTTATGATGAACTTGTGAAGAAGTTGCAAGTGAAGGCAAAGGATTGGGTTGTTGGGGATCCTTTTGATGCTATTGTTCATCAAGGACCCCAGGTCGATAAAAAGCAGTTTGAGAAAATTTTGACCTACATCGAGCATGGGAAAAGAGAGGAGCAACTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

111

Amino Acids

12.45

Weight (kDa)

8.91

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	40 - 108	5.3e-18	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24503
fragaria_vesca	FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05090 FvH4_1g05100
malus_domestica	MD02G1049700.v1.1 MD02G1049800.v1.1 MD02G1049900.v1.1 MD02G1050000.v1.1 MD15G1187300.v1.1
prunus_persica	Prupe.7G229100_v2.0.a1 Prupe.7G229100_v2.0.a1
pyrus_communis	pycom02g04120 pycom15g16790
rosa_chinensis	RchiOBHm_Chr2g0090721 RchiOBHm_Chr2g0090731 RchiOBHm_Chr2g0090741 RchiOBHm_Chr3g0491911 RchiOBHm_Chr3g0491951 RchiOBHm_Chr3g0491981
rosa_laevigata	RLG00000016137 RLG00000016138 RLG00000016139 RLG00000022800 RLG00000022801 RLG00000022808 RLG00000022810 RLG00000022817
rosa_multiflora	Rmu_sc0004195.1_g000003 Rmu_ssc0000367.1_g000002 Rmu_ssc0000367.1_g000003
rosa_roxburghii	Rroxscaffold_2G00150860 Rroxscaffold_2G00150870 Rroxscaffold_2G00150880 Rroxscaffold_6G00390770 Rroxscaffold_6G00392670
rosa_rugosa	Rorug02G0009900 Rorug02G0010000 Rorug02G0010100 Rorug02G0010200 Rorug03G0250900 Rorug03G0250900 Rorug03G0290800
rosa_samantha	Rh2AG056000 Rh2BG054400 Rh2BG054800 Rh2CG056700 Rh2CG056800 Rh2CG057100 Rh2DG055500 Rh2DG055700 Rh3AG300500 Rh3AG300700 Rh3AG300800 Rh3AG300900 Rh3BG336800 Rh3BG337100 Rh3CG334100 Rh3CG334200 Rh3DG336000 Rh3DG336300 Rh3DG336400 Rh3DG336500
rosa_wichuraiana	Rw2G004650 Rw2G004660 Rw3G026580 Rw3G026590 Rw3G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	3 cut(s)	37, 224, 237
AcsI	RAATTY	3 cut(s)	132, 171, 288
AgsI	TTSAA	1 cut(s)	164
AhdI	GACNNNNNGTC	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	3 cut(s)	37, 224, 237
Ama87I	CYCGRG	1 cut(s)	150
AoxI	GGCC	1 cut(s)	107
ApoI	RAATTY	3 cut(s)	132, 171, 288
AspS9I	GGNCC	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	257
BamHI	GGATCC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	257
BmeRI	GACNNNNNGTC	1 cut(s)	263
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	3 cut(s)	53, 231, 259
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	78, 261
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	2 cut(s)	78, 261
BseRI	GAGGAG	1 cut(s)	335
BshFI	GGCC	1 cut(s)	109
BsiHKCI	CYCGRG	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	109
BsoBI	CYCGRG	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	29, 229
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	109
BspLI	GGNNCC	3 cut(s)	53, 231, 259
BspPI	GGATC	3 cut(s)	37, 224, 237
BssECI	CCNNGG	2 cut(s)	78, 261
BssMI	GATC	2 cut(s)	29, 229
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	263
BstKTI	GATC	2 cut(s)	32, 232
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	29, 229
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	257
CviAII	CATG	2 cut(s)	5, 308
CviJI	RGCY	3 cut(s)	52, 94, 109
CviKI_1	RGCY	3 cut(s)	52, 94, 109
DpnI	GATC	2 cut(s)	31, 231
DpnII	GATC	2 cut(s)	29, 229
DriI	GACNNNNNGTC	1 cut(s)	263
Eam1105I	GACNNNNNGTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	2 cut(s)	8, 311
FaiI	YATR	4 cut(s)	6, 14, 177, 309
FatI	CATG	2 cut(s)	4, 307
FauI	CCCGC	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	8, 311
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	153
Hpy188III	TCNNGA	3 cut(s)	37, 150, 164
HpyAV	CCTTC	2 cut(s)	161, 199
HpyCH4V	TGCA	2 cut(s)	4, 199
Hsp92II	CATG	2 cut(s)	8, 311
Kzo9I	GATC	2 cut(s)	29, 229
LmnI	GCTCC	2 cut(s)	57, 322
LpnPI	CCDG	2 cut(s)	248, 275
LweI	GCATC	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	31, 231
MboI	GATC	2 cut(s)	29, 229
MboII	GAAGA	2 cut(s)	85, 202
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	3 cut(s)	132, 171, 288
MlyI	GAGTC	1 cut(s)	162
MnlI	CCTC	3 cut(s)	91, 99, 313
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
NdeII	GATC	2 cut(s)	29, 229
NlaIII	CATG	2 cut(s)	8, 311
NlaIV	GGNNCC	3 cut(s)	53, 231, 259
NmuCI	GTSAC	1 cut(s)	139
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	150
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PpuMI	RGGWCCY	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	3 cut(s)	53, 231, 259
PspPI	GGNCC	1 cut(s)	257
PspPPI	RGGWCCY	1 cut(s)	257
PsuI	RGATCY	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	334
Sau3AI	GATC	2 cut(s)	29, 229
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	3 cut(s)	96, 267, 299
SfaNI	GCATC	1 cut(s)	229
Sfr274I	CTCGAG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	150
SmlI	CTYRAG	2 cut(s)	95, 150
SmoI	CTYRAG	2 cut(s)	95, 150
Sse9I	AATT	3 cut(s)	132, 171, 288
SsiI	CCGC	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	78
TaqI	TCGA	3 cut(s)	151, 267, 303
TasI	AATT	3 cut(s)	132, 171, 288
Tru1I	TTAA	1 cut(s)	334
Tru9I	TTAA	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	195, 239
TspGWI	ACGGA	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	3 cut(s)	132, 171, 288
XhoI	CTCGAG	1 cut(s)	150
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.