Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000629

Physical Location & Seq

Genomic Coordinates Reverse (-)

88238782 .. 88248174

Gene Structure 9393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00150880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3015 bp

ATGGCTGGTGATAGTAATGGCAGCCCTGCAGCCTCCGAGTCCTTCGTGAAGATGCCAACCATAAAGTTCACCAAGCTCTTCATCAATGGAGAATTCGTCGACTCCATCTCAGGTAAAACATTCGAGACCATAGATCCAAGAACCGGGGAGGTGATAACCAGAGTTGCAGAGGGAGATAAAGAAGACGTGGACCTGGCGGTGAAAGCTGCACGCGCCGCCTTCGACCATGGCCCTTGGCCTCGTTTTCCCGGCGCTGAGAGAGGAGCGATTATGTTGAAGTTTGCAGACTTGATTGATGAACACACAGAAGAACTGGCCAAGTTGGATACAGTTGATGCTGGGAAGTTGTTCGGTTTTGGCAAAGCTGTAGACATACCTCAGGTAGCACACATGGTACGTTACTATGCCGGTGCAGCTGATAAAATTCATGGGGAGGTGCTGAAAATGTCGCGTGAGCTCCAAGGTTATACGTTGCTCGAACCCATTGGTGTTGTCGGACACATTATTCCCTGGAATTTCCCCAGCAGCCTGCTGTTTGCTAAGGTTGCCCCTACCTTAGCTGCTGGTTGCACTATGGTCATCAAACCTGCTGAGCAAACACCTCTTTCGGCGCTTTATTATGCCCATCTGGCTAAGTTGGCTGGTGTTCCTGATGGAGTACTCAATGTCATAACTGGATTTGGAAAGACTGCTGGTGCTGCCGTCACCCATCATATGGACATTGACAAAGTCAGTTTTACTGGTTCCACGGACGTAGGTCGTGAGGTGATGCAGGCTGCAGCGAAGAGCAATTTAAAAGCAGTTTCACTTGAACTAGGGGGCAAGTCACCGCTTTTAATTTTTGATGATGCTGATGTCGACAAGGCTGCTGACCTTGCTCTCTTGGGAATCCTCTACAACAAGGGAGAAATTTGTGTGGCCAGTTCTCGAGTCTTTGTTCAAGAAGGAATTTATGATGAACTTGTGAAGAAGTTGCAAGTGAAGGCAAAGGATTGGGTTGTTGGGGATCCTTTTGATCCTAATGTTCGTCAAGGACCCCAGGTTGATAAAAAACAGTTTGAGAAAATCTTGACATACATTGAGCATGGGAAAAGAGAAGGAGCAACTTTGCTAACAGGAGGAAAGCCTGTGGGGAAGAAGGGCTATTACATTGAGCCAACAGTATTCACTGATGTCAAGGATGACATGCTTATAGCCAAGGATGAAATATTCGGACCTGTAATGTCACTGATGAAGTTCAAGACCATTGAGGAGGGAATAGCGAGAGCCAACAACACCAAGTATGGCCTAGCTGCAGGCATTGTAACCAAGAACATTGATGTGGCTAACACCGTCTCAAGATCAATCCGCGCAGGCATTATATGGATCAACTGCTACTTTGCCTTCGACCGCGATTGCCCTTATGGAGGATACAAGATGAGTGGCTTTGGAAGAGACTTTGCGTCATGCTATACGAAGCCAAGCAAGAGCAAGCCTCTTGACAAAGAAACAAAGATAATGGGTGGCCAAAGTAATGGAAGCTCTGCATGCTCCGAAGAGTCATTTGTGAAGATGCCAACGATAAAGTTCACCAAGCTCTTCATCAACGGAGAATTCGTCGATTCCGTTTCAGGAAAAACATTTGAGACGATAGACCCAAGAACAGGGGAGTTGATAACCAGAGTGGCAGAAGGAGACAAGGAAGACGTGGATTTGGCCGTGAAAGCTGCACGCGCGGCCTTTGACCACGGCCCCTGGCCTCGCTTGCCCGGCGCTGAGAGGGGAGCAATTATGTTGAAGTTTGCAGACTTGATTGATGTTCACACAGAAGAACTGGCCAAGTTGGATACAGTTGATGCTGGGAAGTTGTTTAGTTTTGGCAAAGCCGTAGACATACCTCAGGTAGCACAAACTCTACGTTACTATGCTGGTGCAGCTGATAAAATTCATGGAGAGGTGCTCAAAATGTCACGCGAGCTTCAAGCTTATACATTACTCGAACCCATTGGAGTTGTCGGACACATCATTCCATGGAATTTTCCCAGCACCCTGTTATTCGCTAAGGTTGCTCCTTCCTTGGCAGCTGGTTGCACAATGGTTGTCAAGCCAGCTGAACAATCACCTCTTTCGGCTCTTTATTATGCATATCTCGCAAAGTTGGCTGGTGTTCCTGACGGAGTGCTCAATGTCATCACTGGATATGGAGAGACAGCTGGTGCTGCCATCACCCATCATATGGACGTTGACAAAGTCAGTTTTACTGGATCCTCAGAGGTCGGCCGTGAAGTAATGCAGGCTGCAGCAAAGAGCAATTTAAAAGCAGTCTCACTTGAACTAGGGGGCAAGTCACCCCTTTTGATTTTTGATGATGCTGATGTAGACATGGCTGCTGACCTTGCTCTCTTGGGGATTCTCTTCAACAAGGGAGAAATTTGCGTGGCAAGTTCTCGTGTTTTTGTTCAAGAAGGGATTTATGATGAGCTTGTGAAGAAGCTGAAAGAGAAGGCAAAAGATTGGGTTGTTGGAGATCCTTTTGATCCTAATGTTCGTCAAGGACCCCAGGTAGATAAAACGCAGTACGAGAAAATCTTGACCTACATTGAACATGGCAAAAGAGAAGGAGCAACTTTGTTAACAGGGGGCAAGCCTGTGGGGAAGAAGGGTTATTACATTGAGCCAACAGTATTCACTGATGTCAAGGATGACATGCTTATAGCCACGGATGAAATATTCGGACCTGTCATGTCGCTAATGAAGTTCAAGACAATTGAGGAGGGAATAGAGAGGGCCAACAAAACCAGATATGGCCTAGCAGCTGGCATTGTAACCAAGAACATCGATGTGGCCAACACCGTCTCAAGATCTATCCGCGCGGGCACTATATGGATCAACTGCTACTTTGCCTTCGGCAACGATGTCCCTTTTGGAGGATACAAGATGAGTGGCTTTGGAAGAGACTATGGTATGCAGGGCCTCCACAAGTATCTGCATACTAAATCTGTGGTCACTCCCATTTATAACTCTCCTTGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

1004

Amino Acids

108.86

Weight (kDa)

6.13

Isoelectric Point (pI)

29.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	32 - 479	1.6e-169	Aldehyde dehydrogenase family
Aldedh	PF00171	532 - 994	2.1e-173	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24503
fragaria_vesca	FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05090 FvH4_1g05100
malus_domestica	MD02G1049700.v1.1 MD02G1049800.v1.1 MD02G1049900.v1.1 MD02G1050000.v1.1 MD15G1187300.v1.1
prunus_persica	Prupe.7G229100_v2.0.a1 Prupe.7G229100_v2.0.a1
pyrus_communis	pycom02g04120 pycom15g16790
rosa_chinensis	RchiOBHm_Chr2g0090721 RchiOBHm_Chr2g0090731 RchiOBHm_Chr2g0090741 RchiOBHm_Chr3g0491911 RchiOBHm_Chr3g0491951 RchiOBHm_Chr3g0491981
rosa_laevigata	RLG00000016137 RLG00000016138 RLG00000016139 RLG00000022800 RLG00000022801 RLG00000022808 RLG00000022810 RLG00000022817
rosa_multiflora	Rmu_sc0004195.1_g000003 Rmu_ssc0000367.1_g000002 Rmu_ssc0000367.1_g000003
rosa_roxburghii	Rroxscaffold_2G00150860 Rroxscaffold_2G00150870 Rroxscaffold_2G00150880 Rroxscaffold_6G00390770 Rroxscaffold_6G00392670
rosa_rugosa	Rorug02G0009900 Rorug02G0010000 Rorug02G0010100 Rorug02G0010200 Rorug03G0250900 Rorug03G0250900 Rorug03G0290800
rosa_samantha	Rh2AG056000 Rh2BG054400 Rh2BG054800 Rh2CG056700 Rh2CG056800 Rh2CG057100 Rh2DG055500 Rh2DG055700 Rh3AG300500 Rh3AG300700 Rh3AG300800 Rh3AG300900 Rh3BG336800 Rh3BG337100 Rh3CG334100 Rh3CG334200 Rh3DG336000 Rh3DG336300 Rh3DG336400 Rh3DG336500
rosa_wichuraiana	Rw2G004650 Rw2G004660 Rw3G026580 Rw3G026590 Rw3G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2997
Acc36I	ACCTGC	1 cut(s)	595
AccB7I	CCANNNNNTGG	2 cut(s)	715, 2215
AccI	GTMKAC	5 cut(s)	99, 369, 858, 1869, 2358
AccII	CGCG	9 cut(s)	213, 451, 1350, 1392, 1713, 1715, 1953, 2850, 2852
AciI	CCGC	8 cut(s)	197, 216, 830, 1348, 1390, 1715, 2848, 2852
AcoI	YGGCCR	7 cut(s)	315, 918, 1504, 1695, 1815, 2257, 2823
AcsI	RAATTY	9 cut(s)	92, 423, 514, 909, 948, 1592, 1923, 2014, 2409
AfaI	GTAC	3 cut(s)	396, 660, 2558
AfiI	CCNNNNNNNGG	6 cut(s)	143, 715, 1406, 1643, 2215, 2906
AhdI	GACNNNNNGTC	1 cut(s)	1441
AjiI	CACGTC	2 cut(s)	187, 1687
AjnI	CCWGG	5 cut(s)	192, 509, 1038, 1733, 2538
Alw21I	GWGCWC	3 cut(s)	459, 1941, 2163
Alw26I	GTCTC	9 cut(s)	119, 1339, 1428, 1619, 1668, 2180, 2308, 2839, 2928
Ama87I	CYCGRG	1 cut(s)	927
ApoI	RAATTY	9 cut(s)	92, 423, 514, 909, 948, 1592, 1923, 2014, 2409
Asp700I	GAANNNNTTC	1 cut(s)	347
AspLEI	GCGC	7 cut(s)	215, 254, 613, 1352, 1715, 1754, 2852
AspS9I	GGNCC	9 cut(s)	190, 230, 1034, 1214, 1730, 2534, 2714, 2766, 2950
AsuC2I	CCSGG	3 cut(s)	145, 249, 1749
AvaI	CYCGRG	1 cut(s)	927
AvaII	GGWCC	5 cut(s)	190, 1034, 1214, 2534, 2714
AxyI	CCTNAGG	2 cut(s)	378, 1878
BaeGI	GKGCMC	1 cut(s)	2858
BalI	TGGCCA	5 cut(s)	317, 920, 1506, 1817, 2825
BamHI	GGATCC	2 cut(s)	1006, 2243
BanII	GRGCYC	1 cut(s)	459
BarI	GAAGNNNNNNTAC	4 cut(s)	1130, 1162, 2630, 2662
BauI	CACGAG	1 cut(s)	2427
BbsI	GAAGAC	2 cut(s)	189, 1689
Bbv12I	GWGCWC	3 cut(s)	459, 1941, 2163
BccI	CCATC	6 cut(s)	113, 633, 647, 717, 2210, 2217
BceAI	ACGGC	5 cut(s)	686, 1682, 1744, 1850, 2244
BcgI	CGANNNNNNTGC	2 cut(s)	848, 882
BciT130I	CCWGG	5 cut(s)	194, 511, 1040, 1735, 2540
BciVI	GTATCC	4 cut(s)	319, 1403, 1819, 2903
BcnI	CCSGG	3 cut(s)	145, 249, 1749
BcoDI	GTCTC	9 cut(s)	119, 1339, 1428, 1619, 1668, 2180, 2308, 2839, 2928
BfaI	CTAG	4 cut(s)	815, 1289, 2315, 2789
BfmI	CTRYAG	5 cut(s)	27, 366, 777, 1293, 2277
BfoI	RGCGCY	3 cut(s)	255, 614, 1755
BfuAI	ACCTGC	1 cut(s)	595
BfuI	GTATCC	4 cut(s)	319, 1403, 1819, 2903
BglI	GCCNNNNNGGC	1 cut(s)	629
BglII	AGATCT	1 cut(s)	2840
BlpI	GCTNAGC	1 cut(s)	591
BmcAI	AGTACT	1 cut(s)	660
Bme1390I	CCNGG	8 cut(s)	145, 194, 249, 511, 1040, 1735, 1749, 2540
Bme18I	GGWCC	5 cut(s)	190, 1034, 1214, 2534, 2714
BmeRI	GACNNNNNGTC	1 cut(s)	1441
BmeT110I	CYCGRG	1 cut(s)	927
BmgBI	CACGTC	2 cut(s)	187, 1687
BmgT120I	GGNCC	9 cut(s)	190, 230, 1034, 1214, 1730, 2534, 2714, 2766, 2950
BmiI	GGNNCC	6 cut(s)	745, 1008, 1036, 1732, 2245, 2536
BmrFI	CCNGG	8 cut(s)	145, 194, 249, 511, 1040, 1735, 1749, 2540
BmsI	GCATC	7 cut(s)	42, 325, 759, 838, 1542, 1825, 2338
BoxI	GACNNNNGTC	1 cut(s)	756
BpiI	GAAGAC	2 cut(s)	189, 1689
BplI	GAGNNNNNCTC	4 cut(s)	1459, 1491, 1923, 1955
Bpu10I	CCTNAGC	3 cut(s)	540, 556, 2040
Bpu1102I	GCTNAGC	1 cut(s)	591
BpuEI	CTTGAG	2 cut(s)	1321, 2821
BpuMI	CCSGG	3 cut(s)	145, 249, 1749
Bsa29I	ATCGAT	1 cut(s)	2817
BsaI	GGTCTC	1 cut(s)	119
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 1581, 1611
Bsc4I	CCNNNNNNNGG	6 cut(s)	143, 715, 1406, 1643, 2215, 2906
Bse118I	RCCGGY	1 cut(s)	407
Bse1I	ACTGG	7 cut(s)	318, 679, 745, 921, 1818, 2179, 2245
Bse21I	CCTNAGG	2 cut(s)	378, 1878
BseBI	CCWGG	5 cut(s)	194, 511, 1040, 1735, 2540
BseCI	ATCGAT	1 cut(s)	2817
BseGI	GGATG	4 cut(s)	1186, 1207, 2686, 2707
BseLI	CCNNNNNNNGG	6 cut(s)	143, 715, 1406, 1643, 2215, 2906
BseMII	CTCAG	7 cut(s)	123, 246, 392, 582, 1746, 1892, 2262
BseNI	ACTGG	7 cut(s)	318, 679, 745, 921, 1818, 2179, 2245
BseRI	GAGGAG	3 cut(s)	276, 1265, 2765
BseSI	GKGCMC	1 cut(s)	2858
BseX3I	CGGCCG	1 cut(s)	2257
BseYI	CCCAGC	4 cut(s)	338, 521, 1838, 2021
BsgI	GTGCAG	4 cut(s)	192, 432, 1692, 1932
Bsh1236I	CGCG	9 cut(s)	213, 451, 1350, 1392, 1713, 1715, 1953, 2850, 2852
Bsh1285I	CGRYCG	2 cut(s)	1390, 2260
BshVI	ATCGAT	1 cut(s)	2817
BsiEI	CGRYCG	2 cut(s)	1390, 2260
BsiHKAI	GWGCWC	3 cut(s)	459, 1941, 2163
BsiHKCI	CYCGRG	1 cut(s)	927
BsiSI	CCGG	4 cut(s)	144, 249, 408, 1749
BslFI	GGGAC	1 cut(s)	2882
BslI	CCNNNNNNNGG	6 cut(s)	143, 715, 1406, 1643, 2215, 2906
BsmAI	GTCTC	9 cut(s)	119, 1339, 1428, 1619, 1668, 2180, 2308, 2839, 2928
BsmBI	CGTCTC	3 cut(s)	1339, 1619, 2839
BsmFI	GGGAC	1 cut(s)	2882
Bso31I	GGTCTC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	927
Bsp1286I	GDGCHC	4 cut(s)	459, 1941, 2163, 2858
Bsp1720I	GCTNAGC	1 cut(s)	591
Bsp19I	CCATGG	2 cut(s)	226, 2009
BspACI	CCGC	8 cut(s)	197, 216, 830, 1348, 1390, 1715, 2848, 2852
BspCNI	CTCAG	7 cut(s)	122, 247, 391, 583, 1747, 1891, 2261
BspDI	ATCGAT	1 cut(s)	2817
BspFNI	CGCG	9 cut(s)	213, 451, 1350, 1392, 1713, 1715, 1953, 2850, 2852
BspLI	GGNNCC	6 cut(s)	745, 1008, 1036, 1732, 2245, 2536
BspMAI	CTGCAG	4 cut(s)	31, 781, 1297, 2281
BspMI	ACCTGC	1 cut(s)	595
BspQI	GCTCTTC	3 cut(s)	83, 779, 1583
BspTNI	GGTCTC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	407
BsrI	ACTGG	7 cut(s)	318, 679, 745, 921, 1818, 2179, 2245
BssAI	RCCGGY	1 cut(s)	407
BssSI	CACGAG	1 cut(s)	2427
BssT1I	CCWWGG	7 cut(s)	226, 233, 460, 1197, 2009, 2055, 3005
Bst2BI	CACGAG	1 cut(s)	2427
Bst2UI	CCWGG	5 cut(s)	194, 511, 1040, 1735, 2540
Bst4CI	ACNGT	7 cut(s)	331, 1056, 1162, 1333, 1831, 2662, 2833
Bst6I	CTCTTC	7 cut(s)	83, 779, 1426, 1530, 1583, 2399, 2926
BstDSI	CCRYGG	5 cut(s)	226, 747, 1726, 2009, 2697
BstENI	CCTNNNNNAGG	2 cut(s)	1404, 2904
BstF5I	GGATG	4 cut(s)	1186, 1207, 2686, 2707
BstFNI	CGCG	9 cut(s)	213, 451, 1350, 1392, 1713, 1715, 1953, 2850, 2852
BstH2I	RGCGCY	3 cut(s)	255, 614, 1755
BstHHI	GCGC	7 cut(s)	215, 254, 613, 1352, 1715, 1754, 2852
BstMAI	GTCTC	9 cut(s)	119, 1339, 1428, 1619, 1668, 2180, 2308, 2839, 2928
BstMCI	CGRYCG	2 cut(s)	1390, 2260
BstNI	CCWGG	5 cut(s)	194, 511, 1040, 1735, 2540
BstNSI	RCATGY	3 cut(s)	1189, 1530, 2689
BstPAI	GACNNNNGTC	1 cut(s)	756
BstSCI	CCNGG	8 cut(s)	143, 192, 247, 509, 1038, 1733, 1747, 2538
BstSFI	CTRYAG	5 cut(s)	27, 366, 777, 1293, 2277
BstSLI	GKGCMC	1 cut(s)	2858
BstUI	CGCG	9 cut(s)	213, 451, 1350, 1392, 1713, 1715, 1953, 2850, 2852
BstV2I	GAAGAC	2 cut(s)	189, 1689
BstX2I	RGATCY	5 cut(s)	133, 1006, 2243, 2506, 2840
BstXI	CCANNNNNNTGG	1 cut(s)	1514
BstYI	RGATCY	5 cut(s)	133, 1006, 2243, 2506, 2840
BstZI	CGGCCG	1 cut(s)	2257
Bsu15I	ATCGAT	1 cut(s)	2817
Bsu36I	CCTNAGG	2 cut(s)	378, 1878
BsuI	GTATCC	4 cut(s)	319, 1403, 1819, 2903
BsuTUI	ATCGAT	1 cut(s)	2817
BtgI	CCRYGG	5 cut(s)	226, 747, 1726, 2009, 2697
BtrI	CACGTC	2 cut(s)	187, 1687
BtsCI	GGATG	4 cut(s)	1186, 1207, 2686, 2707
BtsIMutI	CAGTG	4 cut(s)	1167, 1226, 2172, 2667
BveI	ACCTGC	1 cut(s)	595
CfoI	GCGC	7 cut(s)	215, 254, 613, 1352, 1715, 1754, 2852
Cfr10I	RCCGGY	1 cut(s)	407
Cfr13I	GGNCC	9 cut(s)	190, 230, 1034, 1214, 1730, 2534, 2714, 2766, 2950
ClaI	ATCGAT	1 cut(s)	2817
CseI	GACGC	1 cut(s)	1431
Csp6I	GTAC	3 cut(s)	395, 659, 2557
CspCI	CAANNNNNGTGG	4 cut(s)	1402, 1437, 2902, 2937
CviQI	GTAC	3 cut(s)	395, 659, 2557
DraI	TTTAAA	2 cut(s)	795, 2295
DriI	GACNNNNNGTC	1 cut(s)	1441
EaeI	YGGCCR	7 cut(s)	315, 918, 1504, 1695, 1815, 2257, 2823
EagI	CGGCCG	1 cut(s)	2257
Eam1104I	CTCTTC	7 cut(s)	83, 779, 1426, 1530, 1583, 2399, 2926
Eam1105I	GACNNNNNGTC	1 cut(s)	1441
EarI	CTCTTC	7 cut(s)	83, 779, 1426, 1530, 1583, 2399, 2926
Ecl136II	GAGCTC	1 cut(s)	457
EclXI	CGGCCG	1 cut(s)	2257
Eco130I	CCWWGG	7 cut(s)	226, 233, 460, 1197, 2009, 2055, 3005
Eco24I	GRGCYC	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	5 cut(s)	190, 1034, 1214, 2534, 2714
Eco52I	CGGCCG	1 cut(s)	2257
Eco53kI	GAGCTC	1 cut(s)	457
Eco81I	CCTNAGG	2 cut(s)	378, 1878
Eco88I	CYCGRG	1 cut(s)	927
EcoICRI	GAGCTC	1 cut(s)	457
EcoNI	CCTNNNNNAGG	2 cut(s)	1404, 2904
EcoO109I	RGGNCCY	3 cut(s)	1034, 2534, 2950
EcoRI	GAATTC	2 cut(s)	92, 1592
EcoRII	CCWGG	5 cut(s)	192, 509, 1038, 1733, 2538
EcoT14I	CCWWGG	7 cut(s)	226, 233, 460, 1197, 2009, 2055, 3005
EcoT22I	ATGCAT	1 cut(s)	2125
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	7 cut(s)	226, 233, 460, 1197, 2009, 2055, 3005
Esp3I	CGTCTC	3 cut(s)	1339, 1619, 2839
FaqI	GGGAC	1 cut(s)	2882
FauI	CCCGC	1 cut(s)	2845
FauNDI	CATATG	2 cut(s)	714, 2214
FblI	GTMKAC	5 cut(s)	99, 369, 858, 1869, 2358
FokI	GGATG	4 cut(s)	1193, 1214, 2693, 2714
FriOI	GRGCYC	1 cut(s)	459
FspBI	CTAG	4 cut(s)	815, 1289, 2315, 2789
GlaI	GCGC	7 cut(s)	214, 253, 612, 1351, 1714, 1753, 2851
GsaI	CCCAGC	4 cut(s)	342, 525, 1842, 2025
HaeII	RGCGCY	3 cut(s)	255, 614, 1755
HapII	CCGG	4 cut(s)	144, 249, 408, 1749
HgaI	GACGC	1 cut(s)	1431
HhaI	GCGC	7 cut(s)	215, 254, 613, 1352, 1715, 1754, 2852
Hin6I	GCGC	7 cut(s)	213, 252, 611, 1350, 1713, 1752, 2850
HinP1I	GCGC	7 cut(s)	213, 252, 611, 1350, 1713, 1752, 2850
HincII	GTYRAC	4 cut(s)	100, 859, 2224, 2613
HindII	GTYRAC	4 cut(s)	100, 859, 2224, 2613
HindIII	AAGCTT	1 cut(s)	1962
HinfI	GANTC	7 cut(s)	38, 101, 888, 930, 1538, 1601, 2389
HpaI	GTTAAC	1 cut(s)	2613
HpaII	CCGG	4 cut(s)	144, 249, 408, 1749
Hpy188I	TCNGA	8 cut(s)	37, 497, 1214, 1534, 1997, 2251, 2714, 3014
Hpy99I	CGWCG	2 cut(s)	101, 1601
HpyCH4III	ACNGT	7 cut(s)	331, 1056, 1162, 1333, 1831, 2662, 2833
HpyCH4IV	ACGT	7 cut(s)	186, 397, 470, 753, 1686, 1897, 2220
HpySE526I	ACGT	7 cut(s)	186, 397, 470, 753, 1686, 1897, 2220
HspAI	GCGC	7 cut(s)	213, 252, 611, 1350, 1713, 1752, 2850
KspAI	GTTAAC	1 cut(s)	2613
LguI	GCTCTTC	3 cut(s)	83, 779, 1583
LmnI	GCTCC	7 cut(s)	263, 462, 1100, 1535, 1763, 2053, 2600
LweI	GCATC	7 cut(s)	42, 325, 759, 838, 1542, 1825, 2338
MaeI	CTAG	4 cut(s)	815, 1289, 2315, 2789
MaeII	ACGT	7 cut(s)	186, 397, 470, 753, 1686, 1897, 2220
MfeI	CAATTG	1 cut(s)	2745
MflI	RGATCY	5 cut(s)	133, 1006, 2243, 2506, 2840
MhlI	GDGCHC	4 cut(s)	459, 1941, 2163, 2858
MlsI	TGGCCA	5 cut(s)	317, 920, 1506, 1817, 2825
MluNI	TGGCCA	5 cut(s)	317, 920, 1506, 1817, 2825
MlyI	GAGTC	4 cut(s)	47, 95, 939, 1547
MmeI	TCCRAC	5 cut(s)	303, 475, 1803, 1975, 2482
Mox20I	TGGCCA	5 cut(s)	317, 920, 1506, 1817, 2825
Mph1103I	ATGCAT	1 cut(s)	2125
MroXI	GAANNNNTTC	1 cut(s)	347
MscI	TGGCCA	5 cut(s)	317, 920, 1506, 1817, 2825
MseI	TTAA	4 cut(s)	794, 836, 2294, 2612
MslI	CAYNNNNRTG	2 cut(s)	1319, 2819
Msp20I	TGGCCA	5 cut(s)	317, 920, 1506, 1817, 2825
MspA1I	CMGCKG	6 cut(s)	416, 1916, 2063, 2090, 2192, 2795
MspI	CCGG	4 cut(s)	144, 249, 408, 1749
MspR9I	CCNGG	8 cut(s)	145, 194, 249, 511, 1040, 1735, 1749, 2540
MunI	CAATTG	1 cut(s)	2745
MvaI	CCWGG	5 cut(s)	194, 511, 1040, 1735, 2540
MvnI	CGCG	9 cut(s)	213, 451, 1350, 1392, 1713, 1715, 1953, 2850, 2852
NciI	CCSGG	3 cut(s)	145, 249, 1749
NcoI	CCATGG	2 cut(s)	226, 2009
NdeI	CATATG	2 cut(s)	714, 2214
NlaIV	GGNNCC	6 cut(s)	745, 1008, 1036, 1732, 2245, 2536
NmuCI	GTSAC	6 cut(s)	703, 825, 1224, 1947, 2325, 2983
NsiI	ATGCAT	1 cut(s)	2125
NspI	RCATGY	3 cut(s)	1189, 1530, 2689
PaeI	GCATGC	1 cut(s)	1530
PaeR7I	CTCGAG	1 cut(s)	927
PciSI	GCTCTTC	3 cut(s)	83, 779, 1583
PcsI	WCGNNNNNNNCGW	2 cut(s)	1593, 1602
PdmI	GAANNNNTTC	1 cut(s)	347
PfeI	GAWTC	3 cut(s)	888, 1601, 2389
PflFI	GACNNNGTC	2 cut(s)	728, 2228
PflMI	CCANNNNNTGG	2 cut(s)	715, 2215
PleI	GAGTC	4 cut(s)	46, 95, 938, 1546
PpsI	GAGTC	4 cut(s)	46, 95, 938, 1546
PpuMI	RGGWCCY	2 cut(s)	1034, 2534
PshAI	GACNNNNGTC	1 cut(s)	756
PsiI	TTATAA	1 cut(s)	2997
Psp124BI	GAGCTC	1 cut(s)	459
Psp5II	RGGWCCY	2 cut(s)	1034, 2534
Psp6I	CCWGG	5 cut(s)	192, 509, 1038, 1733, 2538
PspFI	CCCAGC	4 cut(s)	338, 521, 1838, 2021
PspGI	CCWGG	5 cut(s)	192, 509, 1038, 1733, 2538
PspN4I	GGNNCC	6 cut(s)	745, 1008, 1036, 1732, 2245, 2536
PspPI	GGNCC	9 cut(s)	190, 230, 1034, 1214, 1730, 2534, 2714, 2766, 2950
PspPPI	RGGWCCY	2 cut(s)	1034, 2534
PstI	CTGCAG	4 cut(s)	31, 781, 1297, 2281
PsuI	RGATCY	5 cut(s)	133, 1006, 2243, 2506, 2840
PsyI	GACNNNGTC	2 cut(s)	728, 2228
PvuII	CAGCTG	6 cut(s)	416, 1916, 2063, 2090, 2192, 2795
RsaI	GTAC	3 cut(s)	396, 660, 2558
RsaNI	GTAC	3 cut(s)	395, 659, 2557
RseI	CAYNNNNRTG	2 cut(s)	1319, 2819
SacI	GAGCTC	1 cut(s)	459
SalI	GTCGAC	2 cut(s)	98, 857
SapI	GCTCTTC	3 cut(s)	83, 779, 1583
SaqAI	TTAA	4 cut(s)	794, 836, 2294, 2612
Sau96I	GGNCC	9 cut(s)	190, 230, 1034, 1214, 1730, 2534, 2714, 2766, 2950
ScaI	AGTACT	1 cut(s)	660
SchI	GAGTC	4 cut(s)	47, 95, 939, 1547
ScrFI	CCNGG	8 cut(s)	145, 194, 249, 511, 1040, 1735, 1749, 2540
SduI	GDGCHC	4 cut(s)	459, 1941, 2163, 2858
SfaNI	GCATC	7 cut(s)	42, 325, 759, 838, 1542, 1825, 2338
SfcI	CTRYAG	5 cut(s)	27, 366, 777, 1293, 2277
Sfr274I	CTCGAG	1 cut(s)	927
SinI	GGWCC	5 cut(s)	190, 1034, 1214, 2534, 2714
SlaI	CTCGAG	1 cut(s)	927
SmiMI	CAYNNNNRTG	2 cut(s)	1319, 2819
SmlI	CTYRAG	3 cut(s)	927, 1336, 2836
SmoI	CTYRAG	3 cut(s)	927, 1336, 2836
SphI	GCATGC	1 cut(s)	1530
SsiI	CCGC	8 cut(s)	197, 216, 830, 1348, 1390, 1715, 2848, 2852
SspI	AATATT	2 cut(s)	1209, 2709
SspMI	CTAG	4 cut(s)	815, 1289, 2315, 2789
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	8 cut(s)	143, 192, 247, 509, 1038, 1733, 1747, 2538
StyI	CCWWGG	7 cut(s)	226, 233, 460, 1197, 2009, 2055, 3005
TaaI	ACNGT	7 cut(s)	331, 1056, 1162, 1333, 1831, 2662, 2833
TaiI	ACGT	7 cut(s)	189, 400, 473, 756, 1689, 1900, 2223
TatI	WGTACW	1 cut(s)	658
TauI	GCSGC	2 cut(s)	218, 1718
TfiI	GAWTC	3 cut(s)	888, 1601, 2389
Tru1I	TTAA	4 cut(s)	794, 836, 2294, 2612
Tru9I	TTAA	4 cut(s)	794, 836, 2294, 2612
TscAI	CASTG	4 cut(s)	1174, 1233, 2179, 2674
TseFI	GTSAC	6 cut(s)	703, 825, 1224, 1947, 2325, 2983
Tsp45I	GTSAC	6 cut(s)	703, 825, 1224, 1947, 2325, 2983
TspGWI	ACGGA	5 cut(s)	764, 1594, 1602, 2169, 2714
TspRI	CASTG	4 cut(s)	1174, 1233, 2179, 2674
Tth111I	GACNNNGTC	2 cut(s)	728, 2228
Van91I	CCANNNNNTGG	2 cut(s)	715, 2215
VpaK11BI	GGWCC	5 cut(s)	190, 1034, 1214, 2534, 2714
XagI	CCTNNNNNAGG	2 cut(s)	1404, 2904
XapI	RAATTY	9 cut(s)	92, 423, 514, 909, 948, 1592, 1923, 2014, 2409
XceI	RCATGY	3 cut(s)	1189, 1530, 2689
XhoI	CTCGAG	1 cut(s)	927
XmiI	GTMKAC	5 cut(s)	99, 369, 858, 1869, 2358
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	4 cut(s)	815, 1289, 2315, 2789
ZrmI	AGTACT	1 cut(s)	660
Zsp2I	ATGCAT	1 cut(s)	2125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.