Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000629

Physical Location & Seq

Genomic Coordinates Forward (+)

12548334 .. 12549444

Gene Structure 1111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022808

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCAGGCTGCAGCACAGAGCAATCTAAAAACAGTTTCACTTGAACTAGGGGGCAAGTCACCCCTTTTAATTTTTGATGATGCTGATGTCGACAAGGCTGCTGACCTTACTTTCTTGGGAATCCTCTACAACAAGGGAGAAATTTGTGTTGCCAGTTCTCGAATCTTTGTTCAAGAAGGAATTTATTATGAACTTGTGAAGAAGTTGCAAGTGAAGGCAAAGAATTGGGTTGTTGGGGATCCTTTTGATCCTAATGTTCATCAAGGACCCCAGCATGGGAAAAGAGAAGGAGCAACTTTGTTAACAGAGGAAAGCCTGTGGGGAAGAAGGGAGCCAACAGTATTCCCTAATGTCAAGGATGATATGCTTATTGCCGAGGATGAAATATTCAGACCTGTAATGTTGCTAATGAAGTTCAAGACCATTGAGGAGGGAGTAGAGAGAGCCAACAACACCAAGTATGGCCTAGCTGCAGGCATTGTAACCAAGAACATCATGTGGCTAACACCGTCTCAAGATCAATCTGCGCAGGCATTATATGGATCAACTGCTACTTTGCCTTCAACCGCGATTGCCCTTATGGAGGATACAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

199

Amino Acids

21.88

Weight (kDa)

5.14

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	3 - 165	1.8e-46	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24503
fragaria_vesca	FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05090 FvH4_1g05100
malus_domestica	MD02G1049700.v1.1 MD02G1049800.v1.1 MD02G1049900.v1.1 MD02G1050000.v1.1 MD15G1187300.v1.1
prunus_persica	Prupe.7G229100_v2.0.a1 Prupe.7G229100_v2.0.a1
pyrus_communis	pycom02g04120 pycom15g16790
rosa_chinensis	RchiOBHm_Chr2g0090721 RchiOBHm_Chr2g0090731 RchiOBHm_Chr2g0090741 RchiOBHm_Chr3g0491911 RchiOBHm_Chr3g0491951 RchiOBHm_Chr3g0491981
rosa_laevigata	RLG00000016137 RLG00000016138 RLG00000016139 RLG00000022800 RLG00000022801 RLG00000022808 RLG00000022810 RLG00000022817
rosa_multiflora	Rmu_sc0004195.1_g000003 Rmu_ssc0000367.1_g000002 Rmu_ssc0000367.1_g000003
rosa_roxburghii	Rroxscaffold_2G00150860 Rroxscaffold_2G00150870 Rroxscaffold_2G00150880 Rroxscaffold_6G00390770 Rroxscaffold_6G00392670
rosa_rugosa	Rorug02G0009900 Rorug02G0010000 Rorug02G0010100 Rorug02G0010200 Rorug03G0250900 Rorug03G0250900 Rorug03G0290800
rosa_samantha	Rh2AG056000 Rh2BG054400 Rh2BG054800 Rh2CG056700 Rh2CG056800 Rh2CG057100 Rh2DG055500 Rh2DG055700 Rh3AG300500 Rh3AG300700 Rh3AG300800 Rh3AG300900 Rh3BG336800 Rh3BG337100 Rh3CG334100 Rh3CG334200 Rh3DG336000 Rh3DG336300 Rh3DG336400 Rh3DG336500
rosa_wichuraiana	Rw2G004650 Rw2G004660 Rw3G026580 Rw3G026590 Rw3G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	528
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	569
AciI	CCGC	1 cut(s)	567
AclWI	GGATC	4 cut(s)	233, 242, 246, 550
AcsI	RAATTY	2 cut(s)	141, 180
AfiI	CCNNNNNNNGG	3 cut(s)	275, 276, 583
AgsI	TTSAA	4 cut(s)	44, 173, 418, 564
AluBI	AGCT	1 cut(s)	470
AluI	AGCT	1 cut(s)	470
Alw26I	GTCTC	1 cut(s)	516
AlwI	GGATC	4 cut(s)	233, 242, 246, 550
AoxI	GGCC	1 cut(s)	463
ApeKI	GCWGC	4 cut(s)	8, 11, 98, 470
ApoI	RAATTY	2 cut(s)	141, 180
AspLEI	GCGC	1 cut(s)	529
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	266
BamHI	GGATCC	1 cut(s)	238
BbvI	GCAGC	3 cut(s)	23, 85, 457
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BciVI	GTATCC	1 cut(s)	580
BcoDI	GTCTC	1 cut(s)	516
BfaI	CTAG	2 cut(s)	47, 467
BfmI	CTRYAG	2 cut(s)	9, 471
BfuI	GTATCC	1 cut(s)	580
BisI	GCNGC	4 cut(s)	9, 12, 99, 471
BlsI	GCNGC	4 cut(s)	10, 13, 100, 472
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	3 cut(s)	240, 268, 333
BmsI	GCATC	1 cut(s)	70
BpuEI	CTTGAG	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	3 cut(s)	275, 276, 583
Bse1I	ACTGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	2 cut(s)	364, 385
BseLI	CCNNNNNNNGG	3 cut(s)	275, 276, 583
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	3 cut(s)	23, 85, 457
BseYI	CCCAGC	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	569
BshFI	GGCC	1 cut(s)	465
BslI	CCNNNNNNNGG	3 cut(s)	275, 276, 583
BsmAI	GTCTC	1 cut(s)	516
BsmBI	CGTCTC	1 cut(s)	516
BsnI	GGCC	1 cut(s)	465
Bsp143I	GATC	4 cut(s)	238, 247, 517, 542
BspACI	CCGC	1 cut(s)	567
BspANI	GGCC	1 cut(s)	465
BspFNI	CGCG	1 cut(s)	569
BspLI	GGNNCC	3 cut(s)	240, 268, 333
BspMAI	CTGCAG	2 cut(s)	13, 475
BspPI	GGATC	4 cut(s)	233, 242, 246, 550
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	4 cut(s)	238, 247, 517, 542
Bst4CI	ACNGT	3 cut(s)	34, 340, 510
BstC8I	GCNNGC	3 cut(s)	6, 475, 531
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstF5I	GGATG	2 cut(s)	364, 385
BstFNI	CGCG	1 cut(s)	569
BstHHI	GCGC	1 cut(s)	529
BstKTI	GATC	4 cut(s)	241, 250, 520, 545
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	4 cut(s)	238, 247, 517, 542
BstSFI	CTRYAG	2 cut(s)	9, 471
BstUI	CGCG	1 cut(s)	569
BstV1I	GCAGC	3 cut(s)	23, 85, 457
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuI	GTATCC	1 cut(s)	580
BsuRI	GGCC	1 cut(s)	465
BtsCI	GGATG	2 cut(s)	364, 385
Cac8I	GCNNGC	3 cut(s)	6, 475, 531
CfoI	GCGC	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	266
CviAII	CATG	2 cut(s)	275, 496
CviJI	RGCY	8 cut(s)	8, 98, 315, 334, 446, 465, 470, 502
CviKI_1	RGCY	8 cut(s)	8, 98, 315, 334, 446, 465, 470, 502
DpnI	GATC	4 cut(s)	240, 249, 519, 544
DpnII	GATC	4 cut(s)	238, 247, 517, 542
Eco47I	GGWCC	1 cut(s)	266
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	266
Esp3I	CGTCTC	1 cut(s)	516
FaeI	CATG	2 cut(s)	278, 499
FaiI	YATR	8 cut(s)	189, 276, 365, 462, 497, 538, 540, 581
FatI	CATG	2 cut(s)	274, 495
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	4 cut(s)	9, 12, 99, 471
FokI	GGATG	2 cut(s)	371, 392
Fsp4HI	GCNGC	4 cut(s)	9, 12, 99, 471
FspBI	CTAG	2 cut(s)	47, 467
FspI	TGCGCA	1 cut(s)	528
GlaI	GCGC	1 cut(s)	528
GluI	GCNGC	4 cut(s)	9, 12, 99, 471
GsaI	CCCAGC	1 cut(s)	274
HaeIII	GGCC	1 cut(s)	465
HhaI	GCGC	1 cut(s)	529
Hin1II	CATG	2 cut(s)	278, 499
Hin6I	GCGC	1 cut(s)	527
HinP1I	GCGC	1 cut(s)	527
HincII	GTYRAC	2 cut(s)	91, 303
HindII	GTYRAC	2 cut(s)	91, 303
HinfI	GANTC	2 cut(s)	120, 162
HpaI	GTTAAC	1 cut(s)	303
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	2 cut(s)	91, 303
Hpy188I	TCNGA	1 cut(s)	392
Hpy188III	TCNNGA	4 cut(s)	159, 173, 418, 515
Hpy8I	GTNNAC	2 cut(s)	91, 303
HpyAV	CCTTC	5 cut(s)	170, 208, 281, 321, 570
HpyCH4III	ACNGT	3 cut(s)	34, 340, 510
HpyCH4V	TGCA	4 cut(s)	4, 11, 208, 473
Hsp92II	CATG	2 cut(s)	278, 499
HspAI	GCGC	1 cut(s)	527
KspAI	GTTAAC	1 cut(s)	303
Kzo9I	GATC	4 cut(s)	238, 247, 517, 542
LmnI	GCTCC	2 cut(s)	290, 331
LpnPI	CCDG	6 cut(s)	166, 284, 329, 408, 459, 515
Lsp1109I	GCAGC	3 cut(s)	23, 85, 457
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	2 cut(s)	47, 467
MaeIII	GTNAC	2 cut(s)	57, 481
MalI	GATC	4 cut(s)	240, 249, 519, 544
MboI	GATC	4 cut(s)	238, 247, 517, 542
MboII	GAAGA	2 cut(s)	211, 336
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	4 cut(s)	69, 141, 180, 223
MnlI	CCTC	6 cut(s)	134, 301, 370, 421, 424, 577
MseI	TTAA	2 cut(s)	68, 302
MvnI	CGCG	1 cut(s)	569
NdeII	GATC	4 cut(s)	238, 247, 517, 542
NlaIII	CATG	2 cut(s)	278, 499
NlaIV	GGNNCC	3 cut(s)	240, 268, 333
NmeAIII	GCCGAG	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	57
NsbI	TGCGCA	1 cut(s)	528
PfeI	GAWTC	2 cut(s)	120, 162
PkrI	GCNGC	4 cut(s)	10, 13, 100, 472
PpuMI	RGGWCCY	1 cut(s)	266
Psp5II	RGGWCCY	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	270
PspN4I	GGNNCC	3 cut(s)	240, 268, 333
PspPI	GGNCC	1 cut(s)	266
PspPPI	RGGWCCY	1 cut(s)	266
PstI	CTGCAG	2 cut(s)	13, 475
PsuI	RGATCY	1 cut(s)	238
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	68, 302
SatI	GCNGC	4 cut(s)	9, 12, 99, 471
Sau3AI	GATC	4 cut(s)	238, 247, 517, 542
Sau96I	GGNCC	1 cut(s)	266
SetI	ASST	3 cut(s)	108, 397, 472
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	2 cut(s)	9, 471
SinI	GGWCC	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
Sse9I	AATT	4 cut(s)	69, 141, 180, 223
SsiI	CCGC	1 cut(s)	567
SspI	AATATT	1 cut(s)	387
SspMI	CTAG	2 cut(s)	47, 467
TaaI	ACNGT	3 cut(s)	34, 340, 510
TaqI	TCGA	2 cut(s)	90, 160
TasI	AATT	4 cut(s)	69, 141, 180, 223
TfiI	GAWTC	2 cut(s)	120, 162
Tru1I	TTAA	2 cut(s)	68, 302
Tru9I	TTAA	2 cut(s)	68, 302
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	4 cut(s)	8, 11, 98, 470
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	4 cut(s)	204, 248, 396, 425
VpaK11BI	GGWCC	1 cut(s)	266
XagI	CCTNNNNNAGG	1 cut(s)	581
XapI	RAATTY	2 cut(s)	141, 180
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	2 cut(s)	47, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.