Aldehyde dehydrogenase family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Aldedh | PF00171 | 34 - 488 | 4.2e-165 | Aldehyde dehydrogenase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1479 |
| Acc36I | ACCTGC | 1 cut(s) | 595 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 715 |
| AccI | GTMKAC | 2 cut(s) | 369, 858 |
| AccII | CGCG | 5 cut(s) | 216, 451, 453, 1332, 1334 |
| AciI | CCGC | 3 cut(s) | 219, 1330, 1334 |
| AclWI | GGATC | 4 cut(s) | 131, 1001, 1010, 1355 |
| AcoI | YGGCCR | 3 cut(s) | 7, 198, 1305 |
| AcsI | RAATTY | 5 cut(s) | 95, 278, 423, 514, 909 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 146, 715, 1388 |
| AgsI | TTSAA | 8 cut(s) | 277, 461, 479, 812, 898, 941, 1064, 1222 |
| AjiI | CACGTC | 1 cut(s) | 190 |
| AjnI | CCWGG | 2 cut(s) | 236, 250 |
| AluBI | AGCT | 8 cut(s) | 24, 79, 209, 416, 457, 464, 563, 632 |
| AluI | AGCT | 8 cut(s) | 24, 79, 209, 416, 457, 464, 563, 632 |
| Alw21I | GWGCWC | 2 cut(s) | 441, 663 |
| Alw26I | GTCTC | 3 cut(s) | 122, 680, 1321 |
| AlwI | GGATC | 4 cut(s) | 131, 1001, 1010, 1355 |
| AoxI | GGCC | 7 cut(s) | 7, 198, 232, 239, 1267, 1305, 1432 |
| ApeKI | GCWGC | 7 cut(s) | 209, 413, 560, 776, 779, 866, 1274 |
| ApoI | RAATTY | 5 cut(s) | 95, 278, 423, 514, 909 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 347 |
| AspLEI | GCGC | 4 cut(s) | 218, 257, 453, 1334 |
| AspS9I | GGNCC | 3 cut(s) | 233, 1196, 1432 |
| AsuHPI | GGTGA | 4 cut(s) | 64, 166, 591, 819 |
| AvaII | GGWCC | 1 cut(s) | 1196 |
| AxyI | CCTNAGG | 1 cut(s) | 378 |
| BaeGI | GKGCMC | 1 cut(s) | 1340 |
| BalI | TGGCCA | 2 cut(s) | 9, 1307 |
| BbsI | GAAGAC | 1 cut(s) | 192 |
| Bbv12I | GWGCWC | 2 cut(s) | 441, 663 |
| BbvI | GCAGC | 7 cut(s) | 196, 425, 572, 763, 791, 853, 1286 |
| BccI | CCATC | 3 cut(s) | 647, 710, 717 |
| BceAI | ACGGC | 2 cut(s) | 185, 350 |
| BciT130I | CCWGG | 2 cut(s) | 238, 252 |
| BciVI | GTATCC | 2 cut(s) | 319, 1385 |
| BcoDI | GTCTC | 3 cut(s) | 122, 680, 1321 |
| BfaI | CTAG | 5 cut(s) | 314, 629, 815, 1271, 1489 |
| BfmI | CTRYAG | 1 cut(s) | 777 |
| BfoI | RGCGCY | 1 cut(s) | 258 |
| BfuAI | ACCTGC | 1 cut(s) | 595 |
| BfuI | GTATCC | 2 cut(s) | 319, 1385 |
| BglII | AGATCT | 1 cut(s) | 1322 |
| BisI | GCNGC | 8 cut(s) | 210, 219, 414, 561, 777, 780, 867, 1275 |
| BlpI | GCTNAGC | 1 cut(s) | 591 |
| BlsI | GCNGC | 8 cut(s) | 211, 220, 415, 562, 778, 781, 868, 1276 |
| Bme1390I | CCNGG | 2 cut(s) | 238, 252 |
| Bme18I | GGWCC | 1 cut(s) | 1196 |
| BmgBI | CACGTC | 1 cut(s) | 190 |
| BmgT120I | GGNCC | 3 cut(s) | 233, 1196, 1432 |
| BmiI | GGNNCC | 2 cut(s) | 235, 745 |
| BmrFI | CCNGG | 2 cut(s) | 238, 252 |
| BmrI | ACTGGG | 1 cut(s) | 684 |
| BmsI | GCATC | 3 cut(s) | 45, 325, 838 |
| BmuI | ACTGGG | 1 cut(s) | 684 |
| BpiI | GAAGAC | 1 cut(s) | 192 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 423, 455 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 591 |
| BpuEI | CTTGAG | 1 cut(s) | 1303 |
| Bsa29I | ATCGAT | 2 cut(s) | 102, 1299 |
| BsaJI | CCNNGG | 6 cut(s) | 36, 229, 236, 509, 555, 1179 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 146, 715, 1388 |
| Bse118I | RCCGGY | 1 cut(s) | 1277 |
| Bse1I | ACTGG | 2 cut(s) | 679, 745 |
| Bse21I | CCTNAGG | 1 cut(s) | 378 |
| BseBI | CCWGG | 2 cut(s) | 238, 252 |
| BseCI | ATCGAT | 2 cut(s) | 102, 1299 |
| BseDI | CCNNGG | 6 cut(s) | 36, 229, 236, 509, 555, 1179 |
| BseGI | GGATG | 3 cut(s) | 10, 1168, 1189 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 146, 715, 1388 |
| BseMII | CTCAG | 3 cut(s) | 392, 582, 762 |
| BseNI | ACTGG | 2 cut(s) | 679, 745 |
| BseRI | GAGGAG | 2 cut(s) | 53, 1247 |
| BseSI | GKGCMC | 1 cut(s) | 1340 |
| BseXI | GCAGC | 7 cut(s) | 196, 425, 572, 763, 791, 853, 1286 |
| BseYI | CCCAGC | 2 cut(s) | 338, 521 |
| BsgI | GTGCAG | 2 cut(s) | 195, 432 |
| Bsh1236I | CGCG | 5 cut(s) | 216, 451, 453, 1332, 1334 |
| BshFI | GGCC | 7 cut(s) | 9, 200, 234, 241, 1269, 1307, 1434 |
| BshVI | ATCGAT | 2 cut(s) | 102, 1299 |
| BsiHKAI | GWGCWC | 2 cut(s) | 441, 663 |
| BsiSI | CCGG | 1 cut(s) | 1278 |
| BslFI | GGGAC | 1 cut(s) | 1364 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 146, 715, 1388 |
| BsmAI | GTCTC | 3 cut(s) | 122, 680, 1321 |
| BsmBI | CGTCTC | 2 cut(s) | 122, 1321 |
| BsmFI | GGGAC | 1 cut(s) | 1364 |
| BsnI | GGCC | 7 cut(s) | 9, 200, 234, 241, 1269, 1307, 1434 |
| Bsp1286I | GDGCHC | 3 cut(s) | 441, 663, 1340 |
| Bsp143I | GATC | 5 cut(s) | 136, 1006, 1015, 1322, 1347 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 591 |
| Bsp19I | CCATGG | 2 cut(s) | 229, 509 |
| BspACI | CCGC | 3 cut(s) | 219, 1330, 1334 |
| BspANI | GGCC | 7 cut(s) | 9, 200, 234, 241, 1269, 1307, 1434 |
| BspCNI | CTCAG | 3 cut(s) | 391, 583, 761 |
| BspDI | ATCGAT | 2 cut(s) | 102, 1299 |
| BspFNI | CGCG | 5 cut(s) | 216, 451, 453, 1332, 1334 |
| BspLI | GGNNCC | 2 cut(s) | 235, 745 |
| BspMAI | CTGCAG | 1 cut(s) | 781 |
| BspMI | ACCTGC | 1 cut(s) | 595 |
| BspPI | GGATC | 4 cut(s) | 131, 1001, 1010, 1355 |
| BspQI | GCTCTTC | 1 cut(s) | 86 |
| BsrFI | RCCGGY | 1 cut(s) | 1277 |
| BsrI | ACTGG | 2 cut(s) | 679, 745 |
| BssAI | RCCGGY | 1 cut(s) | 1277 |
| BssECI | CCNNGG | 6 cut(s) | 36, 229, 236, 509, 555, 1179 |
| BssMI | GATC | 5 cut(s) | 136, 1006, 1015, 1322, 1347 |
| BssT1I | CCWWGG | 3 cut(s) | 229, 509, 555 |
| Bst2UI | CCWGG | 2 cut(s) | 238, 252 |
| Bst4CI | ACNGT | 3 cut(s) | 331, 1144, 1315 |
| Bst6I | CTCTTC | 2 cut(s) | 86, 899 |
| BstC8I | GCNNGC | 6 cut(s) | 214, 455, 774, 1106, 1279, 1336 |
| BstDEI | CTNAG | 5 cut(s) | 378, 540, 591, 633, 748 |
| BstDSI | CCRYGG | 3 cut(s) | 229, 509, 1179 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1386 |
| BstF5I | GGATG | 3 cut(s) | 10, 1168, 1189 |
| BstFNI | CGCG | 5 cut(s) | 216, 451, 453, 1332, 1334 |
| BstH2I | RGCGCY | 1 cut(s) | 258 |
| BstHHI | GCGC | 4 cut(s) | 218, 257, 453, 1334 |
| BstKTI | GATC | 5 cut(s) | 139, 1009, 1018, 1325, 1350 |
| BstMAI | GTCTC | 3 cut(s) | 122, 680, 1321 |
| BstMBI | GATC | 5 cut(s) | 136, 1006, 1015, 1322, 1347 |
| BstNI | CCWGG | 2 cut(s) | 238, 252 |
| BstNSI | RCATGY | 2 cut(s) | 33, 1171 |
| BstSCI | CCNGG | 2 cut(s) | 236, 250 |
| BstSFI | CTRYAG | 1 cut(s) | 777 |
| BstSLI | GKGCMC | 1 cut(s) | 1340 |
| BstUI | CGCG | 5 cut(s) | 216, 451, 453, 1332, 1334 |
| BstV1I | GCAGC | 7 cut(s) | 196, 425, 572, 763, 791, 853, 1286 |
| BstV2I | GAAGAC | 1 cut(s) | 192 |
| BstX2I | RGATCY | 3 cut(s) | 136, 1006, 1322 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 17 |
| BstYI | RGATCY | 3 cut(s) | 136, 1006, 1322 |
| Bsu15I | ATCGAT | 2 cut(s) | 102, 1299 |
| Bsu36I | CCTNAGG | 1 cut(s) | 378 |
| BsuI | GTATCC | 2 cut(s) | 319, 1385 |
| BsuRI | GGCC | 7 cut(s) | 9, 200, 234, 241, 1269, 1307, 1434 |
| BsuTUI | ATCGAT | 2 cut(s) | 102, 1299 |
| BtgI | CCRYGG | 3 cut(s) | 229, 509, 1179 |
| BtrI | CACGTC | 1 cut(s) | 190 |
| BtsCI | GGATG | 3 cut(s) | 10, 1168, 1189 |
| BtsIMutI | CAGTG | 2 cut(s) | 672, 1149 |
| BveI | ACCTGC | 1 cut(s) | 595 |
| Cac8I | GCNNGC | 6 cut(s) | 214, 455, 774, 1106, 1279, 1336 |
| CfoI | GCGC | 4 cut(s) | 218, 257, 453, 1334 |
| Cfr10I | RCCGGY | 1 cut(s) | 1277 |
| Cfr13I | GGNCC | 3 cut(s) | 233, 1196, 1432 |
| ClaI | ATCGAT | 2 cut(s) | 102, 1299 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1384, 1419 |
| CviAII | CATG | 7 cut(s) | 30, 230, 510, 862, 1067, 1168, 1204 |
| DdeI | CTNAG | 5 cut(s) | 378, 540, 591, 633, 748 |
| DpnI | GATC | 5 cut(s) | 138, 1008, 1017, 1324, 1349 |
| DpnII | GATC | 5 cut(s) | 136, 1006, 1015, 1322, 1347 |
| DraI | TTTAAA | 1 cut(s) | 795 |
| EaeI | YGGCCR | 3 cut(s) | 7, 198, 1305 |
| Eam1104I | CTCTTC | 2 cut(s) | 86, 899 |
| EarI | CTCTTC | 2 cut(s) | 86, 899 |
| Eco130I | CCWWGG | 3 cut(s) | 229, 509, 555 |
| Eco47I | GGWCC | 1 cut(s) | 1196 |
| Eco81I | CCTNAGG | 1 cut(s) | 378 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1386 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1432 |
| EcoRI | GAATTC | 1 cut(s) | 95 |
| EcoRII | CCWGG | 2 cut(s) | 236, 250 |
| EcoT14I | CCWWGG | 3 cut(s) | 229, 509, 555 |
| ErhI | CCWWGG | 3 cut(s) | 229, 509, 555 |
| Esp3I | CGTCTC | 2 cut(s) | 122, 1321 |
| FaeI | CATG | 7 cut(s) | 33, 233, 513, 865, 1070, 1171, 1207 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 792, 824 |
| FaqI | GGGAC | 1 cut(s) | 1364 |
| FatI | CATG | 7 cut(s) | 29, 229, 509, 861, 1066, 1167, 1203 |
| FauI | CCCGC | 1 cut(s) | 1327 |
| FauNDI | CATATG | 1 cut(s) | 714 |
| FblI | GTMKAC | 2 cut(s) | 369, 858 |
| Fnu4HI | GCNGC | 8 cut(s) | 210, 219, 414, 561, 777, 780, 867, 1275 |
| FokI | GGATG | 3 cut(s) | 17, 1175, 1196 |
| Fsp4HI | GCNGC | 8 cut(s) | 210, 219, 414, 561, 777, 780, 867, 1275 |
| FspBI | CTAG | 5 cut(s) | 314, 629, 815, 1271, 1489 |
| GlaI | GCGC | 4 cut(s) | 217, 256, 452, 1333 |
| GluI | GCNGC | 8 cut(s) | 210, 219, 414, 561, 777, 780, 867, 1275 |
| GsaI | CCCAGC | 2 cut(s) | 342, 525 |
| HaeII | RGCGCY | 1 cut(s) | 258 |
| HaeIII | GGCC | 7 cut(s) | 9, 200, 234, 241, 1269, 1307, 1434 |
| HapII | CCGG | 1 cut(s) | 1278 |
| HhaI | GCGC | 4 cut(s) | 218, 257, 453, 1334 |
| Hin1II | CATG | 7 cut(s) | 33, 233, 513, 865, 1070, 1171, 1207 |
| Hin6I | GCGC | 4 cut(s) | 216, 255, 451, 1332 |
| HinP1I | GCGC | 4 cut(s) | 216, 255, 451, 1332 |
| HincII | GTYRAC | 2 cut(s) | 975, 1095 |
| HindII | GTYRAC | 2 cut(s) | 975, 1095 |
| HindIII | AAGCTT | 1 cut(s) | 462 |
| HinfI | GANTC | 3 cut(s) | 41, 104, 889 |
| HpaI | GTTAAC | 1 cut(s) | 1095 |
| HpaII | CCGG | 1 cut(s) | 1278 |
| HphI | GGTGA | 4 cut(s) | 64, 166, 591, 819 |
| Hpy166II | GTNNAC | 5 cut(s) | 72, 370, 859, 975, 1095 |
| Hpy188I | TCNGA | 4 cut(s) | 37, 497, 751, 1196 |
| Hpy188III | TCNNGA | 9 cut(s) | 114, 127, 650, 761, 941, 967, 1051, 1222, 1320 |
| Hpy8I | GTNNAC | 5 cut(s) | 72, 370, 859, 975, 1095 |
| HpyAV | CCTTC | 6 cut(s) | 167, 561, 938, 976, 1114, 1375 |
| HpyCH4III | ACNGT | 3 cut(s) | 331, 1144, 1315 |
| HpyCH4IV | ACGT | 2 cut(s) | 189, 397 |
| HpyCH4V | TGCA | 9 cut(s) | 29, 170, 212, 413, 570, 772, 779, 1429, 1450 |
| HpyF3I | CTNAG | 5 cut(s) | 378, 540, 591, 633, 748 |
| HpySE526I | ACGT | 2 cut(s) | 189, 397 |
| Hsp92II | CATG | 7 cut(s) | 33, 233, 513, 865, 1070, 1171, 1207 |
| HspAI | GCGC | 4 cut(s) | 216, 255, 451, 1332 |
| KroI | GCCGGC | 1 cut(s) | 1277 |
| KroNI | GCCGGC | 1 cut(s) | 1279 |
| KspAI | GTTAAC | 1 cut(s) | 1095 |
| Kzo9I | GATC | 5 cut(s) | 136, 1006, 1015, 1322, 1347 |
| LguI | GCTCTTC | 1 cut(s) | 86 |
| LmnI | GCTCC | 3 cut(s) | 263, 553, 1082 |
| Lsp1109I | GCAGC | 7 cut(s) | 196, 425, 572, 763, 791, 853, 1286 |
| LweI | GCATC | 3 cut(s) | 45, 325, 838 |
| MaeI | CTAG | 5 cut(s) | 314, 629, 815, 1271, 1489 |
| MaeII | ACGT | 2 cut(s) | 189, 397 |
| MaeIII | GTNAC | 4 cut(s) | 398, 825, 1285, 1465 |
| MalI | GATC | 5 cut(s) | 138, 1008, 1017, 1324, 1349 |
| MboI | GATC | 5 cut(s) | 136, 1006, 1015, 1322, 1347 |
| MboII | GAAGA | 6 cut(s) | 64, 73, 197, 320, 886, 1129 |
| MfeI | CAATTG | 1 cut(s) | 1227 |
| MflI | RGATCY | 3 cut(s) | 136, 1006, 1322 |
| MhlI | GDGCHC | 3 cut(s) | 441, 663, 1340 |
| MlsI | TGGCCA | 2 cut(s) | 9, 1307 |
| MluCI | AATT | 8 cut(s) | 95, 267, 278, 423, 514, 790, 909, 1227 |
| MluNI | TGGCCA | 2 cut(s) | 9, 1307 |
| MlyI | GAGTC | 1 cut(s) | 50 |
| MmeI | TCCRAC | 4 cut(s) | 303, 466, 475, 982 |
| Mox20I | TGGCCA | 2 cut(s) | 9, 1307 |
| MroNI | GCCGGC | 1 cut(s) | 1277 |
| MroXI | GAANNNNTTC | 1 cut(s) | 347 |
| MscI | TGGCCA | 2 cut(s) | 9, 1307 |
| MseI | TTAA | 2 cut(s) | 794, 1094 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1301 |
| Msp20I | TGGCCA | 2 cut(s) | 9, 1307 |
| MspA1I | CMGCKG | 2 cut(s) | 416, 563 |
| MspI | CCGG | 1 cut(s) | 1278 |
| MspR9I | CCNGG | 2 cut(s) | 238, 252 |
| MunI | CAATTG | 1 cut(s) | 1227 |
| MvaI | CCWGG | 2 cut(s) | 238, 252 |
| MvnI | CGCG | 5 cut(s) | 216, 451, 453, 1332, 1334 |
| NaeI | GCCGGC | 1 cut(s) | 1279 |
| NcoI | CCATGG | 2 cut(s) | 229, 509 |
| NdeI | CATATG | 1 cut(s) | 714 |
| NdeII | GATC | 5 cut(s) | 136, 1006, 1015, 1322, 1347 |
| NgoMIV | GCCGGC | 1 cut(s) | 1277 |
| NlaIII | CATG | 7 cut(s) | 33, 233, 513, 865, 1070, 1171, 1207 |
| NlaIV | GGNNCC | 2 cut(s) | 235, 745 |
| NmuCI | GTSAC | 2 cut(s) | 825, 1465 |
| NspI | RCATGY | 2 cut(s) | 33, 1171 |
| PciSI | GCTCTTC | 1 cut(s) | 86 |
| PdiI | GCCGGC | 1 cut(s) | 1279 |
| PdmI | GAANNNNTTC | 1 cut(s) | 347 |
| PfeI | GAWTC | 2 cut(s) | 104, 889 |
| PflFI | GACNNNGTC | 1 cut(s) | 728 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 715 |
| PkrI | GCNGC | 8 cut(s) | 211, 220, 415, 562, 778, 781, 868, 1276 |
| PleI | GAGTC | 1 cut(s) | 49 |
| PpsI | GAGTC | 1 cut(s) | 49 |
| PsiI | TTATAA | 1 cut(s) | 1479 |
| Psp6I | CCWGG | 2 cut(s) | 236, 250 |
| PspFI | CCCAGC | 2 cut(s) | 338, 521 |
| PspGI | CCWGG | 2 cut(s) | 236, 250 |
| PspN4I | GGNNCC | 2 cut(s) | 235, 745 |
| PspPI | GGNCC | 3 cut(s) | 233, 1196, 1432 |
| PstI | CTGCAG | 1 cut(s) | 781 |
| PsuI | RGATCY | 3 cut(s) | 136, 1006, 1322 |
| PsyI | GACNNNGTC | 1 cut(s) | 728 |
| PvuII | CAGCTG | 2 cut(s) | 416, 563 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1301 |
| SapI | GCTCTTC | 1 cut(s) | 86 |
| SaqAI | TTAA | 2 cut(s) | 794, 1094 |
| SatI | GCNGC | 8 cut(s) | 210, 219, 414, 561, 777, 780, 867, 1275 |
| Sau3AI | GATC | 5 cut(s) | 136, 1006, 1015, 1322, 1347 |
| Sau96I | GGNCC | 3 cut(s) | 233, 1196, 1432 |
| SchI | GAGTC | 1 cut(s) | 50 |
| ScrFI | CCNGG | 2 cut(s) | 238, 252 |
| SduI | GDGCHC | 3 cut(s) | 441, 663, 1340 |
| SfaNI | GCATC | 3 cut(s) | 45, 325, 838 |
| SfcI | CTRYAG | 1 cut(s) | 777 |
| SinI | GGWCC | 1 cut(s) | 1196 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1301 |
| SmlI | CTYRAG | 1 cut(s) | 1318 |
| SmoI | CTYRAG | 1 cut(s) | 1318 |
| Sse9I | AATT | 8 cut(s) | 95, 267, 278, 423, 514, 790, 909, 1227 |
| SsiI | CCGC | 3 cut(s) | 219, 1330, 1334 |
| SspI | AATATT | 1 cut(s) | 1191 |
| SspMI | CTAG | 5 cut(s) | 314, 629, 815, 1271, 1489 |
| StyD4I | CCNGG | 2 cut(s) | 236, 250 |
| StyI | CCWWGG | 3 cut(s) | 229, 509, 555 |
| TaaI | ACNGT | 3 cut(s) | 331, 1144, 1315 |
| TaiI | ACGT | 2 cut(s) | 192, 400 |
| TaqI | TCGA | 3 cut(s) | 102, 126, 1299 |
| TasI | AATT | 8 cut(s) | 95, 267, 278, 423, 514, 790, 909, 1227 |
| TauI | GCSGC | 1 cut(s) | 221 |
| TfiI | GAWTC | 2 cut(s) | 104, 889 |
| Tru1I | TTAA | 2 cut(s) | 794, 1094 |
| Tru9I | TTAA | 2 cut(s) | 794, 1094 |
| TscAI | CASTG | 2 cut(s) | 679, 1156 |
| TseFI | GTSAC | 2 cut(s) | 825, 1465 |
| TseI | GCWGC | 7 cut(s) | 209, 413, 560, 776, 779, 866, 1274 |
| Tsp45I | GTSAC | 2 cut(s) | 825, 1465 |
| TspDTI | ATGAA | 7 cut(s) | 73, 88, 312, 972, 1120, 1200, 1229 |
| TspGWI | ACGGA | 3 cut(s) | 97, 444, 1196 |
| TspRI | CASTG | 2 cut(s) | 679, 1156 |
| Tth111I | GACNNNGTC | 1 cut(s) | 728 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 715 |
| VpaK11BI | GGWCC | 1 cut(s) | 1196 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1386 |
| XapI | RAATTY | 5 cut(s) | 95, 278, 423, 514, 909 |
| XceI | RCATGY | 2 cut(s) | 33, 1171 |
| XmiI | GTMKAC | 2 cut(s) | 369, 858 |
| XmnI | GAANNNNTTC | 1 cut(s) | 347 |
| XspI | CTAG | 5 cut(s) | 314, 629, 815, 1271, 1489 |