Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000629

Physical Location & Seq

Genomic Coordinates Forward (+)

12407158 .. 12408837

Gene Structure 1680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022800

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTTGCCTTTGTTCTTTGTCTTCCTCCGTTGCCCTGGATTGCTCTACACCGTTTCTCGCTATTTCTATTTCAAAGTTGGGCTCTGCTTGATGAGAAATTATGCATGGGATTATGGGAACGGGGCAAGTGAACCCCTTTTAATTTTTAATGATGCTGATGTCGACAAGGCTGCTGACCTTGCTCTCTTGGGAATTCTCTACAACAAGGGAGAAATTTGTGTGACCAGTTCTCGAGTCTTTGTTCAAGAAGGAATTTATGATGAACTTGTGAAGAAGTTGCAAGTGAAGGCAAAGGATTGGGTTGTTGGGGATCCTTTTGATCCTAATGTTCATCAAGGACCCCAGCATGGGAAAAGAGAAGGAGCAACTTTGTTAACAGGAGGAAAGCCTGTGGGGAAGAAGGGTTATTACATTGAGTCAACAGATGATATGCTTATTGCCAAGGATGACATATTCGGACCTGTAACGTCGCTAATGAAGTTCAAGACCATTGAGGAGGGAGTAGCGAGAGCCAACAACACCAAGTATGGCCTAGCTGCCGGCATTGCATTATATGGATCAACAGCTACTTTGCCTTCGACCGCGACGTATAAGTCTCCTCGTAATGTCAGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

206

Amino Acids

22.58

Weight (kDa)

8.3

Isoelectric Point (pI)

29.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	41 - 182	2.6e-37	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24503
fragaria_vesca	FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05090 FvH4_1g05100
malus_domestica	MD02G1049700.v1.1 MD02G1049800.v1.1 MD02G1049900.v1.1 MD02G1050000.v1.1 MD15G1187300.v1.1
prunus_persica	Prupe.7G229100_v2.0.a1 Prupe.7G229100_v2.0.a1
pyrus_communis	pycom02g04120 pycom15g16790
rosa_chinensis	RchiOBHm_Chr2g0090721 RchiOBHm_Chr2g0090731 RchiOBHm_Chr2g0090741 RchiOBHm_Chr3g0491911 RchiOBHm_Chr3g0491951 RchiOBHm_Chr3g0491981
rosa_laevigata	RLG00000016137 RLG00000016138 RLG00000016139 RLG00000022800 RLG00000022801 RLG00000022808 RLG00000022810 RLG00000022817
rosa_multiflora	Rmu_sc0004195.1_g000003 Rmu_ssc0000367.1_g000002 Rmu_ssc0000367.1_g000003
rosa_roxburghii	Rroxscaffold_2G00150860 Rroxscaffold_2G00150870 Rroxscaffold_2G00150880 Rroxscaffold_6G00390770 Rroxscaffold_6G00392670
rosa_rugosa	Rorug02G0009900 Rorug02G0010000 Rorug02G0010100 Rorug02G0010200 Rorug03G0250900 Rorug03G0250900 Rorug03G0290800
rosa_samantha	Rh2AG056000 Rh2BG054400 Rh2BG054800 Rh2CG056700 Rh2CG056800 Rh2CG057100 Rh2DG055500 Rh2DG055700 Rh3AG300500 Rh3AG300700 Rh3AG300800 Rh3AG300900 Rh3BG336800 Rh3BG337100 Rh3CG334100 Rh3CG334200 Rh3DG336000 Rh3DG336300 Rh3DG336400 Rh3DG336500
rosa_wichuraiana	Rw2G004650 Rw2G004660 Rw3G026580 Rw3G026590 Rw3G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	592
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	1 cut(s)	584
AciI	CCGC	1 cut(s)	582
AclWI	GGATC	4 cut(s)	305, 314, 318, 565
AcsI	RAATTY	3 cut(s)	192, 213, 252
AfiI	CCNNNNNNNGG	2 cut(s)	347, 348
AgsI	TTSAA	3 cut(s)	73, 245, 484
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	536, 566
AluI	AGCT	2 cut(s)	536, 566
Alw26I	GTCTC	1 cut(s)	600
AlwI	GGATC	4 cut(s)	305, 314, 318, 565
Ama87I	CYCGRG	1 cut(s)	231
AoxI	GGCC	1 cut(s)	529
ApeKI	GCWGC	2 cut(s)	170, 536
ApoI	RAATTY	3 cut(s)	192, 213, 252
AspS9I	GGNCC	2 cut(s)	338, 458
AvaI	CYCGRG	1 cut(s)	231
AvaII	GGWCC	2 cut(s)	338, 458
BamHI	GGATCC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	84
BarI	GAAGNNNNNNTAC	2 cut(s)	392, 424
BbsI	GAAGAC	1 cut(s)	13
BbvI	GCAGC	2 cut(s)	157, 523
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciT130I	CCWGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	600
BfaI	CTAG	1 cut(s)	533
BisI	GCNGC	2 cut(s)	171, 537
BlsI	GCNGC	2 cut(s)	172, 538
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	2 cut(s)	338, 458
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	338, 458
BmiI	GGNNCC	2 cut(s)	312, 340
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	34, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 348
Bse118I	RCCGGY	1 cut(s)	539
Bse1I	ACTGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	34, 441
BseGI	GGATG	1 cut(s)	451
BseLI	CCNNNNNNNGG	2 cut(s)	347, 348
BseMI	GCAATG	1 cut(s)	543
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	2 cut(s)	509, 588
BseXI	GCAGC	2 cut(s)	157, 523
BseYI	CCCAGC	1 cut(s)	342
Bsh1236I	CGCG	1 cut(s)	584
Bsh1285I	CGRYCG	1 cut(s)	582
BshFI	GGCC	1 cut(s)	531
BsiEI	CGRYCG	1 cut(s)	582
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	540
BslI	CCNNNNNNNGG	2 cut(s)	347, 348
BsmAI	GTCTC	1 cut(s)	600
BsnI	GGCC	1 cut(s)	531
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	3 cut(s)	310, 319, 557
BspACI	CCGC	1 cut(s)	582
BspANI	GGCC	1 cut(s)	531
BspFNI	CGCG	1 cut(s)	584
BspLI	GGNNCC	2 cut(s)	312, 340
BspPI	GGATC	4 cut(s)	305, 314, 318, 565
BsrDI	GCAATG	1 cut(s)	543
BsrFI	RCCGGY	1 cut(s)	539
BsrI	ACTGG	1 cut(s)	225
BssAI	RCCGGY	1 cut(s)	539
BssECI	CCNNGG	2 cut(s)	34, 441
BssMI	GATC	3 cut(s)	310, 319, 557
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	52
BstC8I	GCNNGC	1 cut(s)	541
BstF5I	GGATG	1 cut(s)	451
BstFNI	CGCG	1 cut(s)	584
BstKTI	GATC	3 cut(s)	313, 322, 560
BstMAI	GTCTC	1 cut(s)	600
BstMBI	GATC	3 cut(s)	310, 319, 557
BstMCI	CGRYCG	1 cut(s)	582
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 545
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
BstUI	CGCG	1 cut(s)	584
BstV1I	GCAGC	2 cut(s)	157, 523
BstV2I	GAAGAC	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	531
BtsCI	GGATG	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	541
Cfr10I	RCCGGY	1 cut(s)	539
Cfr13I	GGNCC	2 cut(s)	338, 458
CviAII	CATG	2 cut(s)	105, 347
CviJI	RGCY	7 cut(s)	82, 170, 388, 512, 531, 536, 566
CviKI_1	RGCY	7 cut(s)	82, 170, 388, 512, 531, 536, 566
DpnI	GATC	3 cut(s)	312, 321, 559
DpnII	GATC	3 cut(s)	310, 319, 557
DrdI	GACNNNNNNGTC	1 cut(s)	592
DseDI	GACNNNNNNGTC	1 cut(s)	592
Eco130I	CCWWGG	1 cut(s)	441
Eco24I	GRGCYC	1 cut(s)	84
Eco47I	GGWCC	2 cut(s)	338, 458
Eco88I	CYCGRG	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	1 cut(s)	441
EcoT22I	ATGCAT	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	2 cut(s)	108, 350
FatI	CATG	2 cut(s)	104, 346
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	171, 537
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	2 cut(s)	171, 537
FspBI	CTAG	1 cut(s)	533
GluI	GCNGC	2 cut(s)	171, 537
GsaI	CCCAGC	1 cut(s)	346
HaeIII	GGCC	1 cut(s)	531
HapII	CCGG	1 cut(s)	540
Hin1II	CATG	2 cut(s)	108, 350
HincII	GTYRAC	3 cut(s)	163, 375, 420
HindII	GTYRAC	3 cut(s)	163, 375, 420
HinfI	GANTC	2 cut(s)	234, 416
HpaI	GTTAAC	1 cut(s)	375
HpaII	CCGG	1 cut(s)	540
Hpy166II	GTNNAC	4 cut(s)	131, 163, 375, 420
Hpy188I	TCNGA	1 cut(s)	458
Hpy188III	TCNNGA	3 cut(s)	231, 245, 484
Hpy8I	GTNNAC	4 cut(s)	131, 163, 375, 420
Hpy99I	CGWCG	2 cut(s)	472, 589
HpyAV	CCTTC	5 cut(s)	242, 280, 353, 394, 585
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	2 cut(s)	467, 587
HpyCH4V	TGCA	3 cut(s)	104, 280, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 545
HpySE526I	ACGT	2 cut(s)	467, 587
Hsp92II	CATG	2 cut(s)	108, 350
KroI	GCCGGC	1 cut(s)	539
KroNI	GCCGGC	1 cut(s)	541
KspAI	GTTAAC	1 cut(s)	375
Kzo9I	GATC	3 cut(s)	310, 319, 557
LmnI	GCTCC	1 cut(s)	362
LpnPI	CCDG	8 cut(s)	21, 48, 238, 356, 363, 402, 474, 553
Lsp1109I	GCAGC	2 cut(s)	157, 523
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	533
MaeII	ACGT	2 cut(s)	467, 587
MaeIII	GTNAC	2 cut(s)	220, 463
MalI	GATC	3 cut(s)	312, 321, 559
MboI	GATC	3 cut(s)	310, 319, 557
MboII	GAAGA	3 cut(s)	13, 283, 409
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	5 cut(s)	97, 141, 192, 213, 252
MlyI	GAGTC	2 cut(s)	243, 425
MnlI	CCTC	5 cut(s)	35, 374, 487, 490, 609
Mph1103I	ATGCAT	1 cut(s)	106
MroNI	GCCGGC	1 cut(s)	539
MseI	TTAA	3 cut(s)	140, 147, 374
MspI	CCGG	1 cut(s)	540
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	584
MwoI	GCNNNNNNNGC	2 cut(s)	179, 545
NaeI	GCCGGC	1 cut(s)	541
NdeII	GATC	3 cut(s)	310, 319, 557
NgoMIV	GCCGGC	1 cut(s)	539
NlaIII	CATG	2 cut(s)	108, 350
NlaIV	GGNNCC	2 cut(s)	312, 340
NmuCI	GTSAC	1 cut(s)	220
NsiI	ATGCAT	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	584
PdiI	GCCGGC	1 cut(s)	541
PkrI	GCNGC	2 cut(s)	172, 538
PleI	GAGTC	2 cut(s)	242, 424
PpsI	GAGTC	2 cut(s)	242, 424
PpuMI	RGGWCCY	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	34
PspFI	CCCAGC	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	2 cut(s)	312, 340
PspPI	GGNCC	2 cut(s)	338, 458
PspPPI	RGGWCCY	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	310
SalI	GTCGAC	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	140, 147, 374
SatI	GCNGC	2 cut(s)	171, 537
Sau3AI	GATC	3 cut(s)	310, 319, 557
Sau96I	GGNCC	2 cut(s)	338, 458
SchI	GAGTC	2 cut(s)	243, 425
ScrFI	CCNGG	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	6 cut(s)	180, 463, 470, 538, 568, 590
SfaNI	GCATC	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	231
SinI	GGWCC	2 cut(s)	338, 458
SlaI	CTCGAG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	5 cut(s)	97, 141, 192, 213, 252
SsiI	CCGC	1 cut(s)	582
SspMI	CTAG	1 cut(s)	533
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	2 cut(s)	470, 590
TaqI	TCGA	3 cut(s)	162, 232, 578
TasI	AATT	5 cut(s)	97, 141, 192, 213, 252
Tru1I	TTAA	3 cut(s)	140, 147, 374
Tru9I	TTAA	3 cut(s)	140, 147, 374
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	2 cut(s)	170, 536
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	3 cut(s)	276, 320, 491
TspGWI	ACGGA	1 cut(s)	17
VpaK11BI	GGWCC	2 cut(s)	338, 458
XapI	RAATTY	3 cut(s)	192, 213, 252
XhoI	CTCGAG	1 cut(s)	231
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	533
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.