Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000629

Physical Location & Seq

Genomic Coordinates Reverse (-)

29605526 .. 29606461

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0290800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCGGAAAACGAGAAGAAGACTGATGATCGACAGGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGATGGAGAAGATAGAGAAGTTCTATTCCCTCATCAGACACTTTCGCGAGGCTCGGAATCGTCTGATCGGATTACGAAAGACACGGCCAAACCATGAGGTCAGCGATGAAGTGGAGCCGGAGAAGATGAAAACCAGCAAGAAAAGGAAGAAAACGGGCGATGATGAGCGTGATCATGAACGGAGATTGAGTACTTGGGTGCCATCATTTGAATGCGAGGATTTCACCAACAAAGAGGTTGAGTATCCAGGAACTTGTCTAAGCTTCCCTGCTCTTCCTTGTAACACTAGTGCTAACACTAGCAATAATGGTAAACAAAAAGTAGAAGATGATGATGCTTCAGAGTGTCTGGACCTTCGACTTGCCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

146

Amino Acids

17.23

Weight (kDa)

4.81

Isoelectric Point (pI)

71.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPR1_interact	PF15699	20 - 142	3.7e-18	NPR1 interacting

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24503
fragaria_vesca	FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05090 FvH4_1g05100
malus_domestica	MD02G1049700.v1.1 MD02G1049800.v1.1 MD02G1049900.v1.1 MD02G1050000.v1.1 MD15G1187300.v1.1
prunus_persica	Prupe.7G229100_v2.0.a1 Prupe.7G229100_v2.0.a1
pyrus_communis	pycom02g04120 pycom15g16790
rosa_chinensis	RchiOBHm_Chr2g0090721 RchiOBHm_Chr2g0090731 RchiOBHm_Chr2g0090741 RchiOBHm_Chr3g0491911 RchiOBHm_Chr3g0491951 RchiOBHm_Chr3g0491981
rosa_laevigata	RLG00000016137 RLG00000016138 RLG00000016139 RLG00000022800 RLG00000022801 RLG00000022808 RLG00000022810 RLG00000022817
rosa_multiflora	Rmu_sc0004195.1_g000003 Rmu_ssc0000367.1_g000002 Rmu_ssc0000367.1_g000003
rosa_roxburghii	Rroxscaffold_2G00150860 Rroxscaffold_2G00150870 Rroxscaffold_2G00150880 Rroxscaffold_6G00390770 Rroxscaffold_6G00392670
rosa_rugosa	Rorug02G0009900 Rorug02G0010000 Rorug02G0010100 Rorug02G0010200 Rorug03G0250900 Rorug03G0250900 Rorug03G0290800
rosa_samantha	Rh2AG056000 Rh2BG054400 Rh2BG054800 Rh2CG056700 Rh2CG056800 Rh2CG057100 Rh2DG055500 Rh2DG055700 Rh3AG300500 Rh3AG300700 Rh3AG300800 Rh3AG300900 Rh3BG336800 Rh3BG337100 Rh3CG334100 Rh3CG334200 Rh3DG336000 Rh3DG336300 Rh3DG336400 Rh3DG336500
rosa_wichuraiana	Rw2G004650 Rw2G004660 Rw3G026580 Rw3G026590 Rw3G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	268
AccII	CGCG	1 cut(s)	117
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	1 cut(s)	262
AgsI	TTSAA	1 cut(s)	281
AhlI	ACTAGT	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	1 cut(s)	333
AluI	AGCT	1 cut(s)	333
AoxI	GGCC	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	26
BccI	CCATC	2 cut(s)	67, 280
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	318
BciVI	GTATCC	1 cut(s)	324
BclI	TGATCA	1 cut(s)	241
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	2 cut(s)	357, 369
BfuI	GTATCC	1 cut(s)	324
BmcAI	AGTACT	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	2 cut(s)	186, 270
BmrFI	CCNGG	1 cut(s)	318
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	26
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
BseBI	CCWGG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	157
BshNI	GGYRCC	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	28, 135, 241
Bsp68I	TCGCGA	1 cut(s)	117
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	157
BspFNI	CGCG	1 cut(s)	117
BspHI	TCATGA	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	186, 270
BspQI	GCTCTTC	1 cut(s)	348
BspT107I	GGYRCC	1 cut(s)	268
BssMI	GATC	3 cut(s)	28, 135, 241
Bst2UI	CCWGG	1 cut(s)	318
Bst6I	CTCTTC	2 cut(s)	60, 348
BstDEI	CTNAG	1 cut(s)	329
BstFNI	CGCG	1 cut(s)	117
BstKTI	GATC	3 cut(s)	31, 138, 244
BstMBI	GATC	3 cut(s)	28, 135, 241
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	316
BstUI	CGCG	1 cut(s)	117
BstV2I	GAAGAC	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	157
BtgZI	GCGATG	2 cut(s)	189, 243
BtuMI	TCGCGA	1 cut(s)	117
CciI	TCATGA	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	2 cut(s)	164, 245
CviJI	RGCY	4 cut(s)	122, 157, 187, 333
CviKI_1	RGCY	4 cut(s)	122, 157, 187, 333
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	3 cut(s)	30, 137, 243
DpnII	GATC	3 cut(s)	28, 135, 241
EaeI	YGGCCR	1 cut(s)	155
Eam1104I	CTCTTC	2 cut(s)	60, 348
EarI	CTCTTC	2 cut(s)	60, 348
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	316
FaeI	CATG	2 cut(s)	167, 248
FaiI	YATR	2 cut(s)	165, 246
FatI	CATG	2 cut(s)	163, 244
FbaI	TGATCA	1 cut(s)	241
FspBI	CTAG	2 cut(s)	357, 369
HaeIII	GGCC	1 cut(s)	157
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	2 cut(s)	167, 248
HindIII	AAGCTT	1 cut(s)	331
HinfI	GANTC	1 cut(s)	127
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	5 cut(s)	107, 126, 135, 140, 412
Hpy188III	TCNNGA	3 cut(s)	116, 245, 419
Hpy8I	GTNNAC	1 cut(s)	383
HpyAV	CCTTC	1 cut(s)	434
HpyF3I	CTNAG	1 cut(s)	329
Hsp92II	CATG	2 cut(s)	167, 248
Ksp22I	TGATCA	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	28, 135, 241
LguI	GCTCTTC	1 cut(s)	348
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	7 cut(s)	20, 201, 217, 303, 330, 351, 404
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	2 cut(s)	357, 369
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	3 cut(s)	30, 137, 243
MboI	GATC	3 cut(s)	28, 135, 241
MnlI	CCTC	6 cut(s)	61, 110, 112, 160, 280, 298
MslI	CAYNNNNRTG	1 cut(s)	280
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	318
Mva1269I	GAATGC	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	318
MvnI	CGCG	1 cut(s)	117
NdeII	GATC	3 cut(s)	28, 135, 241
NlaIII	CATG	2 cut(s)	167, 248
NlaIV	GGNNCC	2 cut(s)	186, 270
NruI	TCGCGA	1 cut(s)	117
PagI	TCATGA	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	348
PctI	GAATGC	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	127
PfoI	TCCNGGA	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	186, 270
PspPI	GGNCC	1 cut(s)	421
RruI	TCGCGA	1 cut(s)	117
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
RseI	CAYNNNNRTG	1 cut(s)	280
SapI	GCTCTTC	1 cut(s)	348
Sau3AI	GATC	3 cut(s)	28, 135, 241
Sau96I	GGNCC	1 cut(s)	421
ScaI	AGTACT	1 cut(s)	262
ScrFI	CCNGG	1 cut(s)	318
SetI	ASST	4 cut(s)	171, 309, 335, 426
SfaNI	GCATC	1 cut(s)	394
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	1 cut(s)	280
SpeI	ACTAGT	1 cut(s)	356
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	2 cut(s)	357, 369
StyD4I	CCNGG	1 cut(s)	316
TaqI	TCGA	2 cut(s)	31, 427
TatI	WGTACW	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	192, 212, 261
TspGWI	ACGGA	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	421
XspI	CTAG	2 cut(s)	357, 369
ZrmI	AGTACT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.