Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000629

Physical Location & Seq

Genomic Coordinates Forward (+)

4537774 .. 4539213

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG057100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGTCATCAAACCAGCTGAGCAGACACCTCTTTCAGCTCTCTATTATGCTCATCTGGCCAAGTTGGCTGGTGTTCCTGATGGAGTGATTAATGTCATAACTGGATATGGAGAGACTGCTGGTGCGGCCATCACTCATCATATGGACATTGACAAAGTCAGTTTTACTGGTTCCACAGACCTAGGCCGTAAAGTGATGCAGGCTGCAGCAAAGAGCAACTTAAAAGCAGTTTCACTTGAACTAGGGGGCAAGTCACCCCTTTTAATTTTTGATGATGCTGATGTAGATAAGGCTGCTGACCTTGCTCCCTTGAGAATCCTCTACAACAAGGGAGAAACTTGTGCGGCAAGTTCTAGTGTTTTTGTTCAAGAAGGGATCTATGATGAACTTGTGAAGAAATTAGAAGTAAAGGCAAAATCTTGGGCTGTTGGGGATCCTTTTTATCCTAATGTTCGTCGAGGACCCCAGATTCTAACGTTGGTGAGTCGTGACAATAATCGCAGGTTGATAAGCAGCAGTTTGAGAAAGTCTTACTACATTGAGCATGGAAAAAGAGGAGCCACTTTGTTAACAGGGGGCAAGCCTTTGGGGAACAAGGGATATTACATCGAGCCAACAGTATTCACTGATGTCAAGGATGACATGCTCACAGCCAAGGATGAGATATTTGGCCCTGTAATGTCACTGATGAAGTTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

233

Amino Acids

25.3

Weight (kDa)

8.95

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	1 - 233	3.7e-74	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24503
fragaria_vesca	FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05090 FvH4_1g05100
malus_domestica	MD02G1049700.v1.1 MD02G1049800.v1.1 MD02G1049900.v1.1 MD02G1050000.v1.1 MD15G1187300.v1.1
prunus_persica	Prupe.7G229100_v2.0.a1 Prupe.7G229100_v2.0.a1
pyrus_communis	pycom02g04120 pycom15g16790
rosa_chinensis	RchiOBHm_Chr2g0090721 RchiOBHm_Chr2g0090731 RchiOBHm_Chr2g0090741 RchiOBHm_Chr3g0491911 RchiOBHm_Chr3g0491951 RchiOBHm_Chr3g0491981
rosa_laevigata	RLG00000016137 RLG00000016138 RLG00000016139 RLG00000022800 RLG00000022801 RLG00000022808 RLG00000022810 RLG00000022817
rosa_multiflora	Rmu_sc0004195.1_g000003 Rmu_ssc0000367.1_g000002 Rmu_ssc0000367.1_g000003
rosa_roxburghii	Rroxscaffold_2G00150860 Rroxscaffold_2G00150870 Rroxscaffold_2G00150880 Rroxscaffold_6G00390770 Rroxscaffold_6G00392670
rosa_rugosa	Rorug02G0009900 Rorug02G0010000 Rorug02G0010100 Rorug02G0010200 Rorug03G0250900 Rorug03G0250900 Rorug03G0290800
rosa_samantha	Rh2AG056000 Rh2BG054400 Rh2BG054800 Rh2CG056700 Rh2CG056800 Rh2CG057100 Rh2DG055500 Rh2DG055700 Rh3AG300500 Rh3AG300700 Rh3AG300800 Rh3AG300900 Rh3BG336800 Rh3BG337100 Rh3CG334100 Rh3CG334200 Rh3DG336000 Rh3DG336300 Rh3DG336400 Rh3DG336500
rosa_wichuraiana	Rw2G004650 Rw2G004660 Rw3G026580 Rw3G026590 Rw3G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	492
AciI	CCGC	2 cut(s)	125, 344
AclI	AACGTT	1 cut(s)	476
AclWI	GGATC	3 cut(s)	383, 428, 441
AcoI	YGGCCR	2 cut(s)	57, 126
AgsI	TTSAA	3 cut(s)	239, 368, 697
AluBI	AGCT	2 cut(s)	17, 38
AluI	AGCT	2 cut(s)	17, 38
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	3 cut(s)	383, 428, 441
AoxI	GGCC	4 cut(s)	57, 126, 184, 670
ApeKI	GCWGC	4 cut(s)	203, 206, 293, 513
AseI	ATTAAT	1 cut(s)	90
AspA2I	CCTAGG	1 cut(s)	181
AspS9I	GGNCC	2 cut(s)	461, 671
AsuHPI	GGTGA	2 cut(s)	246, 493
AvaII	GGWCC	1 cut(s)	461
AvrII	CCTAGG	1 cut(s)	181
BalI	TGGCCA	1 cut(s)	59
BamHI	GGATCC	1 cut(s)	433
BbvI	GCAGC	4 cut(s)	190, 218, 280, 525
BccI	CCATC	2 cut(s)	74, 137
BceAI	ACGGC	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	3 cut(s)	182, 242, 354
BfmI	CTRYAG	1 cut(s)	204
BfuAI	ACCTGC	1 cut(s)	492
BglI	GCCNNNNNGGC	1 cut(s)	65
BisI	GCNGC	6 cut(s)	126, 204, 207, 294, 345, 514
BlnI	CCTAGG	1 cut(s)	181
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	6 cut(s)	127, 205, 208, 295, 346, 515
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	2 cut(s)	461, 671
BmiI	GGNNCC	4 cut(s)	172, 435, 463, 559
BmsI	GCATC	2 cut(s)	186, 265
Bpu1102I	GCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	331
BsaJI	CCNNGG	2 cut(s)	181, 654
Bse1I	ACTGG	2 cut(s)	106, 172
BseDI	CCNNGG	2 cut(s)	181, 654
BseGI	GGATG	2 cut(s)	643, 664
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	2 cut(s)	106, 172
BseRI	GAGGAG	1 cut(s)	570
BseXI	GCAGC	4 cut(s)	190, 218, 280, 525
BshFI	GGCC	4 cut(s)	59, 128, 186, 672
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	4 cut(s)	59, 128, 186, 672
Bsp143I	GATC	2 cut(s)	375, 433
Bsp1720I	GCTNAGC	1 cut(s)	18
BspACI	CCGC	2 cut(s)	125, 344
BspANI	GGCC	4 cut(s)	59, 128, 186, 672
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	4 cut(s)	172, 435, 463, 559
BspMAI	CTGCAG	1 cut(s)	208
BspMI	ACCTGC	1 cut(s)	492
BspPI	GGATC	3 cut(s)	383, 428, 441
BsrI	ACTGG	2 cut(s)	106, 172
BssECI	CCNNGG	2 cut(s)	181, 654
BssMI	GATC	2 cut(s)	375, 433
BssT1I	CCWWGG	2 cut(s)	181, 654
Bst4CI	ACNGT	1 cut(s)	619
BstC8I	GCNNGC	2 cut(s)	201, 581
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	643, 664
BstKTI	GATC	2 cut(s)	378, 436
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	375, 433
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 65, 125, 302
BstNSI	RCATGY	1 cut(s)	646
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	4 cut(s)	190, 218, 280, 525
BstX2I	RGATCY	2 cut(s)	375, 433
BstYI	RGATCY	2 cut(s)	375, 433
BsuRI	GGCC	4 cut(s)	59, 128, 186, 672
BtsCI	GGATG	2 cut(s)	643, 664
BtsIMutI	CAGTG	2 cut(s)	624, 683
BveI	ACCTGC	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	201, 581
Cfr13I	GGNCC	2 cut(s)	461, 671
CviAII	CATG	2 cut(s)	545, 643
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	2 cut(s)	377, 435
DpnII	GATC	2 cut(s)	375, 433
EaeI	YGGCCR	2 cut(s)	57, 126
Eco130I	CCWWGG	2 cut(s)	181, 654
Eco47I	GGWCC	1 cut(s)	461
EcoO109I	RGGNCCY	1 cut(s)	461
EcoT14I	CCWWGG	2 cut(s)	181, 654
ErhI	CCWWGG	2 cut(s)	181, 654
FaeI	CATG	2 cut(s)	548, 646
FaiI	YATR	8 cut(s)	48, 98, 108, 141, 143, 381, 546, 644
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FatI	CATG	2 cut(s)	544, 642
FauNDI	CATATG	1 cut(s)	141
Fnu4HI	GCNGC	6 cut(s)	126, 204, 207, 294, 345, 514
FokI	GGATG	2 cut(s)	650, 671
Fsp4HI	GCNGC	6 cut(s)	126, 204, 207, 294, 345, 514
FspBI	CTAG	3 cut(s)	182, 242, 354
GluI	GCNGC	6 cut(s)	126, 204, 207, 294, 345, 514
HaeIII	GGCC	4 cut(s)	59, 128, 186, 672
Hin1II	CATG	2 cut(s)	548, 646
HincII	GTYRAC	1 cut(s)	570
HindII	GTYRAC	1 cut(s)	570
HinfI	GANTC	3 cut(s)	315, 469, 484
HpaI	GTTAAC	1 cut(s)	570
HphI	GGTGA	2 cut(s)	246, 493
Hpy166II	GTNNAC	1 cut(s)	570
Hpy188III	TCNNGA	3 cut(s)	77, 368, 488
Hpy8I	GTNNAC	1 cut(s)	570
Hpy99I	CGWCG	1 cut(s)	459
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	1 cut(s)	619
HpyCH4IV	ACGT	1 cut(s)	476
HpyCH4V	TGCA	2 cut(s)	199, 206
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 65, 125, 302
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	476
Hsp92II	CATG	2 cut(s)	548, 646
KspAI	GTTAAC	1 cut(s)	570
Kzo9I	GATC	2 cut(s)	375, 433
LmnI	GCTCC	2 cut(s)	310, 557
Lsp1109I	GCAGC	4 cut(s)	190, 218, 280, 525
LweI	GCATC	2 cut(s)	186, 265
MaeI	CTAG	3 cut(s)	182, 242, 354
MaeII	ACGT	1 cut(s)	476
MaeIII	GTNAC	3 cut(s)	252, 488, 681
MalI	GATC	2 cut(s)	377, 435
MboI	GATC	2 cut(s)	375, 433
MboII	GAAGA	1 cut(s)	406
MflI	RGATCY	2 cut(s)	375, 433
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	2 cut(s)	264, 398
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	493
MnlI	CCTC	4 cut(s)	39, 329, 452, 548
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	4 cut(s)	90, 221, 263, 569
Msp20I	TGGCCA	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	17
MwoI	GCNNNNNNNGC	4 cut(s)	56, 65, 125, 302
NdeI	CATATG	1 cut(s)	141
NdeII	GATC	2 cut(s)	375, 433
NlaIII	CATG	2 cut(s)	548, 646
NlaIV	GGNNCC	4 cut(s)	172, 435, 463, 559
NmuCI	GTSAC	3 cut(s)	252, 488, 681
NspI	RCATGY	1 cut(s)	646
PfeI	GAWTC	2 cut(s)	315, 469
PflFI	GACNNNGTC	1 cut(s)	155
PkrI	GCNGC	6 cut(s)	127, 205, 208, 295, 346, 515
PleI	GAGTC	1 cut(s)	492
PpsI	GAGTC	1 cut(s)	492
PpuMI	RGGWCCY	1 cut(s)	461
PshBI	ATTAAT	1 cut(s)	90
Psp1406I	AACGTT	1 cut(s)	476
Psp5II	RGGWCCY	1 cut(s)	461
PspN4I	GGNNCC	4 cut(s)	172, 435, 463, 559
PspPI	GGNCC	2 cut(s)	461, 671
PspPPI	RGGWCCY	1 cut(s)	461
PstI	CTGCAG	1 cut(s)	208
PsuI	RGATCY	2 cut(s)	375, 433
PsyI	GACNNNGTC	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	17
SaqAI	TTAA	4 cut(s)	90, 221, 263, 569
SatI	GCNGC	6 cut(s)	126, 204, 207, 294, 345, 514
Sau3AI	GATC	2 cut(s)	375, 433
Sau96I	GGNCC	2 cut(s)	461, 671
SchI	GAGTC	1 cut(s)	493
SetI	ASST	7 cut(s)	19, 31, 40, 183, 303, 479, 506
SfaNI	GCATC	2 cut(s)	186, 265
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
Sse9I	AATT	2 cut(s)	264, 398
SsiI	CCGC	2 cut(s)	125, 344
SspMI	CTAG	3 cut(s)	182, 242, 354
StyI	CCWWGG	2 cut(s)	181, 654
TaaI	ACNGT	1 cut(s)	619
TaiI	ACGT	1 cut(s)	479
TaqI	TCGA	2 cut(s)	457, 609
TasI	AATT	2 cut(s)	264, 398
TauI	GCSGC	2 cut(s)	128, 347
TfiI	GAWTC	2 cut(s)	315, 469
Tru1I	TTAA	4 cut(s)	90, 221, 263, 569
Tru9I	TTAA	4 cut(s)	90, 221, 263, 569
TscAI	CASTG	2 cut(s)	631, 690
TseFI	GTSAC	3 cut(s)	252, 488, 681
TseI	GCWGC	4 cut(s)	203, 206, 293, 513
Tsp45I	GTSAC	3 cut(s)	252, 488, 681
TspDTI	ATGAA	1 cut(s)	399
TspRI	CASTG	2 cut(s)	631, 690
Tth111I	GACNNNGTC	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	461
VspI	ATTAAT	1 cut(s)	90
XceI	RCATGY	1 cut(s)	646
XmaJI	CCTAGG	1 cut(s)	181
XspI	CTAG	3 cut(s)	182, 242, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.