Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000629

Physical Location & Seq

Genomic Coordinates Reverse (-)

36036060 .. 36047029

Gene Structure 10970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG337100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAGGCCAAAGAAACTGACACAAGTACACAGCCAAATGCTTCTGCCACCAAAAACAGCAAGATTGTATGCGTCACTCTTAGGCTTCCGTCCTGCAACCATGCACGAACAGTGCTCTGGGGCAAGTCAACCCCTTTTAATTTTTAATGATGCTGATGTCGACAAGGCTGCTGACTTTGCTCTCTTGGGAATCGTCTACAACAAGGGAGAAATTTGTGTGACCAGTTCTCGAGTCTTTGTTCAAGAAGGAATTTATGATGAACTTGTGAAGAAGTTGCAAGTGAAGGCAAAGGATTGGGTTGTTGGGGATCCTTTTGATCCTATTGTTCATCAAGGACCCCAGAGAGGAGCAACTTTGTTAACAGGAGGAAAGCCTGTGGGGAAGAAGGGTTATTACATTGAGCCAACAGTATTCACTGTAGTCAAGGATGATATGCTTATTGCCAAGGATGACATATTCGGACCTGTAATGTCGCTAATGAAGTTCAAGACCATTGAGGAGGGAGTAGCGAGAGCCAACAATACCAAGTATGGCCAAGCTGCAGGCATTGTAACCAAGAACATCATGTGGCTAACACCGTCTCAAGATCAATCCGCGCAGGCATTATATGGATCAACAGCTACTTTGCCTTTGACCACGACTTATAAGTCTCCTCGTAATGTACCGGCGGTGCCCTCTTCAATAATTCAGCGAGACGGAGGGTCAGCTCCTGGACCAGCGACTGCAAGATTTGTTTTGTTAGCTTCATGGTACACGAAACCAAGCAAGACCAAGTCTCTTGACAAAGAAACAGAGATCGATAATGGGTGGCCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

272

Amino Acids

29.69

Weight (kDa)

9.31

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	40 - 188	1e-43	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24503
fragaria_vesca	FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05090 FvH4_1g05100
malus_domestica	MD02G1049700.v1.1 MD02G1049800.v1.1 MD02G1049900.v1.1 MD02G1050000.v1.1 MD15G1187300.v1.1
prunus_persica	Prupe.7G229100_v2.0.a1 Prupe.7G229100_v2.0.a1
pyrus_communis	pycom02g04120 pycom15g16790
rosa_chinensis	RchiOBHm_Chr2g0090721 RchiOBHm_Chr2g0090731 RchiOBHm_Chr2g0090741 RchiOBHm_Chr3g0491911 RchiOBHm_Chr3g0491951 RchiOBHm_Chr3g0491981
rosa_laevigata	RLG00000016137 RLG00000016138 RLG00000016139 RLG00000022800 RLG00000022801 RLG00000022808 RLG00000022810 RLG00000022817
rosa_multiflora	Rmu_sc0004195.1_g000003 Rmu_ssc0000367.1_g000002 Rmu_ssc0000367.1_g000003
rosa_roxburghii	Rroxscaffold_2G00150860 Rroxscaffold_2G00150870 Rroxscaffold_2G00150880 Rroxscaffold_6G00390770 Rroxscaffold_6G00392670
rosa_rugosa	Rorug02G0009900 Rorug02G0010000 Rorug02G0010100 Rorug02G0010200 Rorug03G0250900 Rorug03G0250900 Rorug03G0290800
rosa_samantha	Rh2AG056000 Rh2BG054400 Rh2BG054800 Rh2CG056700 Rh2CG056800 Rh2CG057100 Rh2DG055500 Rh2DG055700 Rh3AG300500 Rh3AG300700 Rh3AG300800 Rh3AG300900 Rh3BG336800 Rh3BG337100 Rh3CG334100 Rh3CG334200 Rh3DG336000 Rh3DG336300 Rh3DG336400 Rh3DG336500
rosa_wichuraiana	Rw2G004650 Rw2G004660 Rw3G026580 Rw3G026590 Rw3G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
AasI	GACNNNNNNGTC	1 cut(s)	646
AccB1I	GGYRCC	1 cut(s)	670
AccI	GTMKAC	2 cut(s)	159, 195
AccII	CGCG	1 cut(s)	596
AciI	CCGC	2 cut(s)	594, 668
AclWI	GGATC	4 cut(s)	302, 311, 315, 619
AcoI	YGGCCR	2 cut(s)	532, 809
AcsI	RAATTY	2 cut(s)	210, 249
AfaI	GTAC	3 cut(s)	27, 663, 752
AfiI	CCNNNNNNNGG	1 cut(s)	344
AgsI	TTSAA	3 cut(s)	242, 487, 681
AhdI	GACNNNNNGTC	1 cut(s)	700
AjnI	CCWGG	1 cut(s)	709
AluBI	AGCT	4 cut(s)	539, 620, 707, 743
AluI	AGCT	4 cut(s)	539, 620, 707, 743
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	4 cut(s)	585, 654, 687, 780
AlwI	GGATC	4 cut(s)	302, 311, 315, 619
AlwNI	CAGNNNCTG	2 cut(s)	710, 722
Ama87I	CYCGRG	1 cut(s)	228
AoxI	GGCC	3 cut(s)	5, 532, 809
ApeKI	GCWGC	2 cut(s)	167, 539
ApoI	RAATTY	2 cut(s)	210, 249
AspLEI	GCGC	1 cut(s)	598
AspS9I	GGNCC	3 cut(s)	335, 461, 713
AvaI	CYCGRG	1 cut(s)	228
AvaII	GGWCC	3 cut(s)	335, 461, 713
BaeGI	GKGCMC	1 cut(s)	675
BalI	TGGCCA	2 cut(s)	534, 811
BamHI	GGATCC	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	670
BarI	GAAGNNNNNNTAC	2 cut(s)	377, 409
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	154, 526
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BciT130I	CCWGG	1 cut(s)	711
BcoDI	GTCTC	4 cut(s)	585, 654, 687, 780
BfmI	CTRYAG	2 cut(s)	417, 540
BisI	GCNGC	2 cut(s)	168, 540
BlsI	GCNGC	2 cut(s)	169, 541
Bme1390I	CCNGG	1 cut(s)	711
Bme18I	GGWCC	3 cut(s)	335, 461, 713
BmeRI	GACNNNNNGTC	1 cut(s)	700
BmeT110I	CYCGRG	1 cut(s)	228
BmgT120I	GGNCC	3 cut(s)	335, 461, 713
BmiI	GGNNCC	3 cut(s)	309, 337, 672
BmrFI	CCNGG	1 cut(s)	711
BmsI	GCATC	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	567
Bsa29I	ATCGAT	1 cut(s)	798
BsaJI	CCNNGG	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse118I	RCCGGY	1 cut(s)	664
Bse1I	ACTGG	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	711
BseCI	ATCGAT	1 cut(s)	798
BseDI	CCNNGG	1 cut(s)	444
BseGI	GGATG	2 cut(s)	433, 454
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseNI	ACTGG	1 cut(s)	222
BseRI	GAGGAG	3 cut(s)	360, 512, 642
BseSI	GKGCMC	1 cut(s)	675
BseXI	GCAGC	2 cut(s)	154, 526
Bsh1236I	CGCG	1 cut(s)	596
BshFI	GGCC	3 cut(s)	7, 534, 811
BshNI	GGYRCC	1 cut(s)	670
BshVI	ATCGAT	1 cut(s)	798
BsiHKAI	GWGCWC	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	665
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	4 cut(s)	585, 654, 687, 780
BsmBI	CGTCTC	2 cut(s)	585, 687
BsnI	GGCC	3 cut(s)	7, 534, 811
BsoBI	CYCGRG	1 cut(s)	228
Bsp1286I	GDGCHC	2 cut(s)	116, 675
Bsp143I	GATC	5 cut(s)	307, 316, 586, 611, 795
BspACI	CCGC	2 cut(s)	594, 668
BspANI	GGCC	3 cut(s)	7, 534, 811
BspDI	ATCGAT	1 cut(s)	798
BspFNI	CGCG	1 cut(s)	596
BspLI	GGNNCC	3 cut(s)	309, 337, 672
BspMAI	CTGCAG	1 cut(s)	544
BspPI	GGATC	4 cut(s)	302, 311, 315, 619
BspT107I	GGYRCC	1 cut(s)	670
BsrFI	RCCGGY	1 cut(s)	664
BsrI	ACTGG	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	664
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	5 cut(s)	307, 316, 586, 611, 795
BssT1I	CCWWGG	1 cut(s)	444
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	4 cut(s)	111, 409, 418, 579
Bst6I	CTCTTC	1 cut(s)	682
BstC8I	GCNNGC	2 cut(s)	544, 600
BstDEI	CTNAG	1 cut(s)	79
BstF5I	GGATG	2 cut(s)	433, 454
BstFNI	CGCG	1 cut(s)	596
BstHHI	GCGC	1 cut(s)	598
BstKTI	GATC	5 cut(s)	310, 319, 589, 614, 798
BstMAI	GTCTC	4 cut(s)	585, 654, 687, 780
BstMBI	GATC	5 cut(s)	307, 316, 586, 611, 795
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	1 cut(s)	711
BstSCI	CCNGG	1 cut(s)	709
BstSFI	CTRYAG	2 cut(s)	417, 540
BstSLI	GKGCMC	1 cut(s)	675
BstUI	CGCG	1 cut(s)	596
BstV1I	GCAGC	2 cut(s)	154, 526
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
Bsu15I	ATCGAT	1 cut(s)	798
BsuRI	GGCC	3 cut(s)	7, 534, 811
BsuTUI	ATCGAT	1 cut(s)	798
BtsCI	GGATG	2 cut(s)	433, 454
BtsIMutI	CAGTG	2 cut(s)	116, 414
Cac8I	GCNNGC	2 cut(s)	544, 600
CaiI	CAGNNNCTG	2 cut(s)	710, 722
CfoI	GCGC	1 cut(s)	598
Cfr10I	RCCGGY	1 cut(s)	664
Cfr13I	GGNCC	3 cut(s)	335, 461, 713
ClaI	ATCGAT	1 cut(s)	798
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	3 cut(s)	26, 662, 751
CviAII	CATG	3 cut(s)	100, 565, 747
CviQI	GTAC	3 cut(s)	26, 662, 751
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	5 cut(s)	309, 318, 588, 613, 797
DpnII	GATC	5 cut(s)	307, 316, 586, 611, 795
DrdI	GACNNNNNNGTC	1 cut(s)	646
DriI	GACNNNNNGTC	1 cut(s)	700
DseDI	GACNNNNNNGTC	1 cut(s)	646
EaeI	YGGCCR	2 cut(s)	532, 809
Eam1104I	CTCTTC	1 cut(s)	682
Eam1105I	GACNNNNNGTC	1 cut(s)	700
EarI	CTCTTC	1 cut(s)	682
Eco130I	CCWWGG	1 cut(s)	444
Eco47I	GGWCC	3 cut(s)	335, 461, 713
Eco88I	CYCGRG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	709
EcoT14I	CCWWGG	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	444
Esp3I	CGTCTC	2 cut(s)	585, 687
FaeI	CATG	3 cut(s)	103, 568, 750
FatI	CATG	3 cut(s)	99, 564, 746
FblI	GTMKAC	2 cut(s)	159, 195
Fnu4HI	GCNGC	2 cut(s)	168, 540
FokI	GGATG	2 cut(s)	440, 461
Fsp4HI	GCNGC	2 cut(s)	168, 540
GlaI	GCGC	1 cut(s)	597
GluI	GCNGC	2 cut(s)	168, 540
HaeIII	GGCC	3 cut(s)	7, 534, 811
HapII	CCGG	1 cut(s)	665
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	1 cut(s)	598
Hin1II	CATG	3 cut(s)	103, 568, 750
Hin6I	GCGC	1 cut(s)	596
HinP1I	GCGC	1 cut(s)	596
HincII	GTYRAC	3 cut(s)	128, 160, 360
HindII	GTYRAC	3 cut(s)	128, 160, 360
HinfI	GANTC	2 cut(s)	189, 231
HpaI	GTTAAC	1 cut(s)	360
HpaII	CCGG	1 cut(s)	665
Hpy166II	GTNNAC	6 cut(s)	28, 128, 160, 196, 360, 753
Hpy188I	TCNGA	1 cut(s)	461
Hpy188III	TCNNGA	5 cut(s)	228, 242, 487, 584, 779
Hpy8I	GTNNAC	6 cut(s)	28, 128, 160, 196, 360, 753
HpyAV	CCTTC	3 cut(s)	239, 277, 379
HpyCH4III	ACNGT	4 cut(s)	111, 409, 418, 579
HpyCH4V	TGCA	5 cut(s)	95, 103, 277, 542, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	79
Hsp92II	CATG	3 cut(s)	103, 568, 750
HspAI	GCGC	1 cut(s)	596
KspAI	GTTAAC	1 cut(s)	360
Kzo9I	GATC	5 cut(s)	307, 316, 586, 611, 795
LmnI	GCTCC	2 cut(s)	347, 712
Lsp1109I	GCAGC	2 cut(s)	154, 526
LweI	GCATC	1 cut(s)	139
MaeIII	GTNAC	3 cut(s)	72, 217, 550
MalI	GATC	5 cut(s)	309, 318, 588, 613, 797
MboI	GATC	5 cut(s)	307, 316, 586, 611, 795
MboII	GAAGA	3 cut(s)	280, 394, 669
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	2 cut(s)	116, 675
MlsI	TGGCCA	2 cut(s)	534, 811
MluCI	AATT	4 cut(s)	138, 210, 249, 684
MluNI	TGGCCA	2 cut(s)	534, 811
MlyI	GAGTC	1 cut(s)	240
MnlI	CCTC	7 cut(s)	338, 359, 490, 493, 663, 685, 692
Mox20I	TGGCCA	2 cut(s)	534, 811
MscI	TGGCCA	2 cut(s)	534, 811
MseI	TTAA	3 cut(s)	137, 144, 359
Msp20I	TGGCCA	2 cut(s)	534, 811
MspI	CCGG	1 cut(s)	665
MspR9I	CCNGG	1 cut(s)	711
MvaI	CCWGG	1 cut(s)	711
MvnI	CGCG	1 cut(s)	596
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	5 cut(s)	307, 316, 586, 611, 795
NlaIII	CATG	3 cut(s)	103, 568, 750
NlaIV	GGNNCC	3 cut(s)	309, 337, 672
NmuCI	GTSAC	2 cut(s)	72, 217
PaeR7I	CTCGAG	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	189
PflFI	GACNNNGTC	1 cut(s)	772
PfoI	TCCNGGA	1 cut(s)	709
PkrI	GCNGC	2 cut(s)	169, 541
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PpuMI	RGGWCCY	1 cut(s)	335
PsiI	TTATAA	1 cut(s)	645
Psp5II	RGGWCCY	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	709
PspGI	CCWGG	1 cut(s)	709
PspN4I	GGNNCC	3 cut(s)	309, 337, 672
PspPI	GGNCC	3 cut(s)	335, 461, 713
PspPPI	RGGWCCY	1 cut(s)	335
PstI	CTGCAG	1 cut(s)	544
PstNI	CAGNNNCTG	2 cut(s)	710, 722
PsuI	RGATCY	1 cut(s)	307
PsyI	GACNNNGTC	1 cut(s)	772
RsaI	GTAC	3 cut(s)	27, 663, 752
RsaNI	GTAC	3 cut(s)	26, 662, 751
SalI	GTCGAC	1 cut(s)	158
SaqAI	TTAA	3 cut(s)	137, 144, 359
SatI	GCNGC	2 cut(s)	168, 540
Sau3AI	GATC	5 cut(s)	307, 316, 586, 611, 795
Sau96I	GGNCC	3 cut(s)	335, 461, 713
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	1 cut(s)	711
SduI	GDGCHC	2 cut(s)	116, 675
SetI	ASST	5 cut(s)	466, 541, 622, 709, 745
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	2 cut(s)	417, 540
Sfr274I	CTCGAG	1 cut(s)	228
SinI	GGWCC	3 cut(s)	335, 461, 713
SlaI	CTCGAG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	228, 582
SmoI	CTYRAG	2 cut(s)	228, 582
Sse9I	AATT	4 cut(s)	138, 210, 249, 684
SsiI	CCGC	2 cut(s)	594, 668
StyD4I	CCNGG	1 cut(s)	709
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	4 cut(s)	111, 409, 418, 579
TaqI	TCGA	3 cut(s)	159, 229, 798
TasI	AATT	4 cut(s)	138, 210, 249, 684
TatI	WGTACW	1 cut(s)	25
TfiI	GAWTC	1 cut(s)	189
Tru1I	TTAA	3 cut(s)	137, 144, 359
Tru9I	TTAA	3 cut(s)	137, 144, 359
TscAI	CASTG	2 cut(s)	116, 421
TseFI	GTSAC	2 cut(s)	72, 217
TseI	GCWGC	2 cut(s)	167, 539
Tsp45I	GTSAC	2 cut(s)	72, 217
TspDTI	ATGAA	4 cut(s)	273, 317, 494, 735
TspGWI	ACGGA	2 cut(s)	77, 711
TspRI	CASTG	2 cut(s)	116, 421
Tth111I	GACNNNGTC	1 cut(s)	772
VpaK11BI	GGWCC	3 cut(s)	335, 461, 713
XapI	RAATTY	2 cut(s)	210, 249
XhoI	CTCGAG	1 cut(s)	228
XmiI	GTMKAC	2 cut(s)	159, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.