Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000629

Physical Location & Seq

Genomic Coordinates Reverse (-)

37477036 .. 37477374

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG336400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGCTTATTGCCAAGGATGACATATTCCGACCTGTAATGTCGCTAATGAAGTTCAAGACCATTGAGGAGGGAGTAGCGAGAGCCAACAATACCAAGTATGGCCTAGCTGCAGGCATTGTAACCAAGAACGTCATGTGGCTAACACCGTCTCAAGATCAATCCGCGCAGGCATTATATGGATCAACAGCTACTTTGCCTTCGACCGCGACTTATAAGTCTCCTCGTAATGTCAGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004029 GO:0004030 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009987 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044550 GO:0050269 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00940 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00940 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

79

Amino Acids

8.62

Weight (kDa)

9.7

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	1 - 44	2.1e-12	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24503
fragaria_vesca	FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05080 FvH4_1g05090 FvH4_1g05100
malus_domestica	MD02G1049700.v1.1 MD02G1049800.v1.1 MD02G1049900.v1.1 MD02G1050000.v1.1 MD15G1187300.v1.1
prunus_persica	Prupe.7G229100_v2.0.a1 Prupe.7G229100_v2.0.a1
pyrus_communis	pycom02g04120 pycom15g16790
rosa_chinensis	RchiOBHm_Chr2g0090721 RchiOBHm_Chr2g0090731 RchiOBHm_Chr2g0090741 RchiOBHm_Chr3g0491911 RchiOBHm_Chr3g0491951 RchiOBHm_Chr3g0491981
rosa_laevigata	RLG00000016137 RLG00000016138 RLG00000016139 RLG00000022800 RLG00000022801 RLG00000022808 RLG00000022810 RLG00000022817
rosa_multiflora	Rmu_sc0004195.1_g000003 Rmu_ssc0000367.1_g000002 Rmu_ssc0000367.1_g000003
rosa_roxburghii	Rroxscaffold_2G00150860 Rroxscaffold_2G00150870 Rroxscaffold_2G00150880 Rroxscaffold_6G00390770 Rroxscaffold_6G00392670
rosa_rugosa	Rorug02G0009900 Rorug02G0010000 Rorug02G0010100 Rorug02G0010200 Rorug03G0250900 Rorug03G0250900 Rorug03G0290800
rosa_samantha	Rh2AG056000 Rh2BG054400 Rh2BG054800 Rh2CG056700 Rh2CG056800 Rh2CG057100 Rh2DG055500 Rh2DG055700 Rh3AG300500 Rh3AG300700 Rh3AG300800 Rh3AG300900 Rh3BG336800 Rh3BG337100 Rh3CG334100 Rh3CG334200 Rh3DG336000 Rh3DG336300 Rh3DG336400 Rh3DG336500
rosa_wichuraiana	Rw2G004650 Rw2G004660 Rw3G026580 Rw3G026590 Rw3G026600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
AasI	GACNNNNNNGTC	1 cut(s)	214
AccII	CGCG	2 cut(s)	164, 206
AciI	CCGC	2 cut(s)	162, 204
AclWI	GGATC	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	55
AluBI	AGCT	2 cut(s)	107, 188
AluI	AGCT	2 cut(s)	107, 188
Alw26I	GTCTC	2 cut(s)	153, 222
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	94
BcoDI	GTCTC	2 cut(s)	153, 222
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	22
BseRI	GAGGAG	2 cut(s)	80, 210
BseXI	GCAGC	1 cut(s)	94
Bsh1236I	CGCG	2 cut(s)	164, 206
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	102
BsiEI	CGRYCG	1 cut(s)	204
BsmAI	GTCTC	2 cut(s)	153, 222
BsmBI	CGTCTC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	154, 179
BspACI	CCGC	2 cut(s)	162, 204
BspANI	GGCC	1 cut(s)	102
BspFNI	CGCG	2 cut(s)	164, 206
BspMAI	CTGCAG	1 cut(s)	112
BspPI	GGATC	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	2 cut(s)	154, 179
BssT1I	CCWWGG	1 cut(s)	12
Bst4CI	ACNGT	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	112, 168
BstF5I	GGATG	1 cut(s)	22
BstFNI	CGCG	2 cut(s)	164, 206
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	2 cut(s)	157, 182
BstMAI	GTCTC	2 cut(s)	153, 222
BstMBI	GATC	2 cut(s)	154, 179
BstMCI	CGRYCG	1 cut(s)	204
BstSFI	CTRYAG	1 cut(s)	108
BstUI	CGCG	2 cut(s)	164, 206
BstV1I	GCAGC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	22
Cac8I	GCNNGC	2 cut(s)	112, 168
CfoI	GCGC	1 cut(s)	166
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	5 cut(s)	83, 102, 107, 139, 188
CviKI_1	RGCY	5 cut(s)	83, 102, 107, 139, 188
DpnI	GATC	2 cut(s)	156, 181
DpnII	GATC	2 cut(s)	154, 179
DrdI	GACNNNNNNGTC	1 cut(s)	214
DseDI	GACNNNNNNGTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	153
FaeI	CATG	1 cut(s)	136
FaiI	YATR	6 cut(s)	23, 99, 134, 175, 177, 213
FatI	CATG	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	104
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	102
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
Hpy188I	TCNGA	1 cut(s)	29
Hpy188III	TCNNGA	2 cut(s)	55, 152
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	136
HspAI	GCGC	1 cut(s)	164
Kzo9I	GATC	2 cut(s)	154, 179
LpnPI	CCDG	3 cut(s)	45, 96, 152
Lsp1109I	GCAGC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	2 cut(s)	156, 181
MboI	GATC	2 cut(s)	154, 179
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	3 cut(s)	58, 61, 231
MvnI	CGCG	2 cut(s)	164, 206
NdeII	GATC	2 cut(s)	154, 179
NlaIII	CATG	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	109
PsiI	TTATAA	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	112
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	154, 179
SetI	ASST	4 cut(s)	34, 109, 132, 190
SfcI	CTRYAG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
SsiI	CCGC	2 cut(s)	162, 204
SspMI	CTAG	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	147
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	200
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	62
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.