RchiOBHm_Chr7g0230581

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002163
Physical Location & Seq
Forward (+)
54149343 .. 54150652
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20662

Sequence Viewer

Length: 282 bp
ATGAACCATGTCAAGAATTTGATATCAAACACGTCTTCTCTTCTCAATACCCAGAAGAATTGCACAACCCAGTTCTCATTCCGAATTCATTCCCGCCAGAGACCCAAAATAATAGCCTCCGCGGTCCCCGTCGCTCTCCACCACCTCCTACACCGTCGCTCTCCACCTCCTACGCCCTCTTTGGAAAGAAACTCGCTGGCATGGGAGGTGAAGGTGGAATGGGTGAGATGGATTTTTCAAAACTTGCTGGCATGGGAGGTGAAGGTGGAATGGGTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.88

Weight (kDa)

10.92

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 122
AciI CCGC 3 cut(s) 94, 120, 122
AcsI RAATTY 2 cut(s) 16, 84
AflIII ACRYGT 1 cut(s) 30
AgsI TTSAA 1 cut(s) 239
AjiI CACGTC 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 94
ApoI RAATTY 2 cut(s) 16, 84
Asp700I GAANNNNTTC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 124
AsuHPI GGTGA 3 cut(s) 220, 235, 271
AvaII GGWCC 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 27
BccI CCATC 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 94
Bme18I GGWCC 1 cut(s) 124
BmgBI CACGTC 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 126
BmrI ACTGGG 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 122
BslFI GGGAC 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 110
Bso31I GGTCTC 1 cut(s) 94
BspACI CCGC 3 cut(s) 94, 120, 122
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 126
BspTNI GGTCTC 1 cut(s) 94
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 198, 249
BstDSI CCRYGG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 122
BstMAI GTCTC 1 cut(s) 94
BstUI CGCG 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 27
BtgI CCRYGG 1 cut(s) 120
BtrI CACGTC 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 198, 249
Cfr13I GGNCC 1 cut(s) 124
Cfr42I CCGCGG 1 cut(s) 123
CviAII CATG 3 cut(s) 8, 201, 252
CviJI RGCY 1 cut(s) 116
CviKI_1 RGCY 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 94
Eco32I GATATC 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 124
EcoRI GAATTC 1 cut(s) 84
EcoRV GATATC 1 cut(s) 24
FaeI CATG 3 cut(s) 11, 204, 255
FaiI YATR 3 cut(s) 9, 202, 253
FaqI GGGAC 1 cut(s) 110
FatI CATG 3 cut(s) 7, 200, 251
FauI CCCGC 1 cut(s) 101
Hin1II CATG 3 cut(s) 11, 204, 255
HphI GGTGA 3 cut(s) 220, 235, 271
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 13
Hpy99I CGWCG 2 cut(s) 134, 159
HpyAV CCTTC 2 cut(s) 205, 256
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 32
Hsp92II CATG 3 cut(s) 11, 204, 255
KspI CCGCGG 1 cut(s) 123
LpnPI CCDG 5 cut(s) 65, 83, 110, 182, 233
MaeII ACGT 1 cut(s) 32
MboII GAAGA 3 cut(s) 27, 32, 67
MluCI AATT 3 cut(s) 16, 58, 84
MnlI CCTC 6 cut(s) 127, 155, 177, 187, 199, 250
MroXI GAANNNNTTC 1 cut(s) 88
MspA1I CMGCKG 1 cut(s) 122
MvnI CGCG 1 cut(s) 122
NlaIII CATG 3 cut(s) 11, 204, 255
NlaIV GGNNCC 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 124
SacII CCGCGG 1 cut(s) 123
Sau96I GGNCC 1 cut(s) 124
SetI ASST 7 cut(s) 35, 147, 169, 210, 216, 261, 267
Sfr303I CCGCGG 1 cut(s) 123
SgrBI CCGCGG 1 cut(s) 123
SinI GGWCC 1 cut(s) 124
Sse9I AATT 3 cut(s) 16, 58, 84
SsiI CCGC 3 cut(s) 94, 120, 122
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 1 cut(s) 35
TasI AATT 3 cut(s) 16, 58, 84
TspDTI ATGAA 2 cut(s) 17, 77
VpaK11BI GGWCC 1 cut(s) 124
XapI RAATTY 2 cut(s) 16, 84
XmnI GAANNNNTTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.