Rh4DG201000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002163
Physical Location & Seq
Reverse (-)
39073888 .. 39074211
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG201000.1

Sequence Viewer

Length: 324 bp
ATGGATCGATGCAAACACCTTATAAAGGAGCAGGCTATGGCTCCTACTTATTCTAAGGGGGTTGTTGGCAGTGAAGGCCAAAAGCCTAAGATTCGGCAAGAGTACAAAGTTAAGTCCAAGCCTCAAGTTCAGCAGCGTTCTCCTGATATTACAGGACAGACTATTATTGATGATCATTCTAATAAGGATGCCAAAATTGCAAAGTTTGCTGACAATGTTATTCAAGAGGCTGTGCACCAAGAACTTAACCGTATTGCTGATGTGGTTATCAATGAAACCATAGTCAATCGTGTGGATATACCTGCAGAGCCTGTGTTACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.03

Weight (kDa)

7.86

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 310
AclWI GGATC 1 cut(s) 12
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 25
AgsI TTSAA 1 cut(s) 224
Alw21I GWGCWC 1 cut(s) 237
Alw44I GTGCAC 1 cut(s) 233
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 311
AoxI GGCC 1 cut(s) 76
ApaLI GTGCAC 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 145
BclI TGATCA 1 cut(s) 172
BfmI CTRYAG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 310
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 42
BmsI GCATC 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 7
Bsc4I CCNNNNNNNGG 1 cut(s) 25
BseCI ATCGAT 1 cut(s) 7
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 25
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 1 cut(s) 145
BshFI GGCC 1 cut(s) 78
BshVI ATCGAT 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 25
BsnI GGCC 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 2 cut(s) 4, 172
BspANI GGCC 1 cut(s) 78
BspDI ATCGAT 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 42
BspMAI CTGCAG 1 cut(s) 307
BspMI ACCTGC 1 cut(s) 310
BspPI GGATC 1 cut(s) 12
BssMI GATC 2 cut(s) 4, 172
Bst4CI ACNGT 2 cut(s) 251, 321
BstAPI GCANNNNNTGC 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 54, 87
BstENI CCTNNNNNAGG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 2 cut(s) 7, 175
BstMBI GATC 2 cut(s) 4, 172
BstMWI GCNNNNNNNGC 3 cut(s) 75, 197, 206
BstSFI CTRYAG 1 cut(s) 303
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 145
Bsu15I ATCGAT 1 cut(s) 7
BsuRI GGCC 1 cut(s) 78
BsuTUI ATCGAT 1 cut(s) 7
BtsCI GGATG 1 cut(s) 193
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 76
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 33
CaiI CAGNNNCTG 1 cut(s) 311
ClaI ATCGAT 1 cut(s) 7
Csp6I GTAC 1 cut(s) 103
CviJI RGCY 7 cut(s) 35, 41, 78, 85, 121, 230, 310
CviKI_1 RGCY 7 cut(s) 35, 41, 78, 85, 121, 230, 310
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 54, 87
DpnI GATC 2 cut(s) 6, 174
DpnII GATC 2 cut(s) 4, 172
EcoNI CCTNNNNNAGG 1 cut(s) 23
FaiI YATR 4 cut(s) 23, 38, 281, 299
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 134
GluI GCNGC 1 cut(s) 134
HaeIII GGCC 1 cut(s) 78
HinfI GANTC 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 235
Hpy188III TCNNGA 2 cut(s) 143, 224
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 2 cut(s) 251, 321
HpyCH4V TGCA 4 cut(s) 12, 200, 235, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 75, 197, 206
HpyF3I CTNAG 2 cut(s) 54, 87
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 2 cut(s) 4, 172
LmnI GCTCC 2 cut(s) 28, 46
LpnPI CCDG 4 cut(s) 17, 138, 156, 315
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 1 cut(s) 178
MaeIII GTNAC 1 cut(s) 315
MalI GATC 2 cut(s) 6, 174
MboI GATC 2 cut(s) 4, 172
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 1 cut(s) 195
MnlI CCTC 2 cut(s) 132, 220
MseI TTAA 2 cut(s) 111, 246
MwoI GCNNNNNNNGC 3 cut(s) 75, 197, 206
NdeII GATC 2 cut(s) 4, 172
NlaIV GGNNCC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 135
PsiI TTATAA 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 42
PstI CTGCAG 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 311
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 2 cut(s) 111, 246
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 2 cut(s) 4, 172
SduI GDGCHC 1 cut(s) 237
SetI ASST 2 cut(s) 21, 304
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
Sse9I AATT 1 cut(s) 195
TaaI ACNGT 2 cut(s) 251, 321
TaqI TCGA 1 cut(s) 7
TasI AATT 1 cut(s) 195
TatI WGTACW 1 cut(s) 102
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 2 cut(s) 111, 246
Tru9I TTAA 2 cut(s) 111, 246
TscAI CASTG 1 cut(s) 76
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 1 cut(s) 288
TspRI CASTG 1 cut(s) 76
VneI GTGCAC 1 cut(s) 233
XagI CCTNNNNNAGG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.