Rroxscaffold_1G00047140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002163
Physical Location & Seq
Reverse (-)
66664470 .. 66667775
3306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00047140.1

Sequence Viewer

Length: 519 bp
ATGGAGAAGACAAGCAAGAGGAACAACCTAATGCCGAGGTTGTTGGATGCCGAAGAGCTTGATGCAGCACTAACTCCGACCCCAAGGGGAAGGAGAAGAACCCAAATCCTTCCCTCCGATGAACCATGTCAAGAATTTGATGACCCATGTCAAGAATTTGATATCAAACACGTCTTCTCTTCTCAATACCCGGAAGAATTGCACAACCCAGTTCTCATTCCGGATTCGTTCCCGCCGGAGACCCAAAATAATAGCCTCCGCGGTCCCCGTCGCTCTCCACCACCTCCTATGCTGTCGCGCTCCACCTCCTATGCCCTCTTTGGAAAGAAACTTGCTGGCATAGGAGGTGAAGGTGGAATGGATGGGATGGATTTTTCGAAACTTGGTGGCATGGGAGGTAAAGGTGGAATGGGTGGGATGGATTTCTCGAAACTTGCTAGCATGGGAGGTGATGGTGCAATGGGTGACTTTGATGATAGCGATGATGGTAAGAAGACTATTAGCTTAATGATGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

18.63

Weight (kDa)

4.96

Isoelectric Point (pI)

58.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 261, 298
AccIII TCCGGA 1 cut(s) 220
AciI CCGC 3 cut(s) 233, 259, 261
AcsI RAATTY 2 cut(s) 134, 155
AflIII ACRYGT 1 cut(s) 169
AjiI CACGTC 1 cut(s) 172
AluBI AGCT 2 cut(s) 58, 504
AluI AGCT 2 cut(s) 58, 504
Alw26I GTCTC 1 cut(s) 233
Aor13HI TCCGGA 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 2 cut(s) 134, 155
AspLEI GCGC 1 cut(s) 300
AspS9I GGNCC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 3 cut(s) 359, 461, 476
AsuII TTCGAA 1 cut(s) 377
AsuNHI GCTAGC 1 cut(s) 437
AvaII GGWCC 1 cut(s) 263
BbsI GAAGAC 3 cut(s) 14, 166, 500
BbvI GCAGC 1 cut(s) 77
BccI CCATC 5 cut(s) 356, 361, 412, 446, 479
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 1 cut(s) 438
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 263
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 191
BmrI ACTGGG 1 cut(s) 203
BmsI GCATC 2 cut(s) 37, 52
BmtI GCTAGC 1 cut(s) 441
BmuI ACTGGG 1 cut(s) 203
BoxI GACNNNNGTC 1 cut(s) 147
BpiI GAAGAC 3 cut(s) 14, 166, 500
Bpu14I TTCGAA 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 191
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 3 cut(s) 35, 83, 259
BsaWI WCCGGW 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 465
BseAI TCCGGA 1 cut(s) 220
BseDI CCNNGG 3 cut(s) 35, 83, 259
BseGI GGATG 4 cut(s) 52, 367, 372, 423
BseMI GCAATG 1 cut(s) 465
BseNI ACTGG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 77
Bsh1236I CGCG 2 cut(s) 261, 298
BsiSI CCGG 3 cut(s) 191, 221, 236
BslFI GGGAC 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 249
Bso31I GGTCTC 1 cut(s) 233
Bsp119I TTCGAA 1 cut(s) 377
Bsp13I TCCGGA 1 cut(s) 220
BspACI CCGC 3 cut(s) 233, 259, 261
BspEI TCCGGA 1 cut(s) 220
BspFNI CGCG 2 cut(s) 261, 298
BspLI GGNNCC 1 cut(s) 265
BspOI GCTAGC 1 cut(s) 441
BspQI GCTCTTC 1 cut(s) 48
BspT104I TTCGAA 1 cut(s) 377
BspTNI GGTCTC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 465
BsrI ACTGG 1 cut(s) 209
BssECI CCNNGG 3 cut(s) 35, 83, 259
BssT1I CCWWGG 1 cut(s) 83
Bst6I CTCTTC 2 cut(s) 48, 184
BstBI TTCGAA 1 cut(s) 377
BstC8I GCNNGC 2 cut(s) 337, 439
BstDSI CCRYGG 1 cut(s) 259
BstF5I GGATG 4 cut(s) 52, 367, 372, 423
BstFNI CGCG 2 cut(s) 261, 298
BstHHI GCGC 1 cut(s) 300
BstMAI GTCTC 1 cut(s) 233
BstPAI GACNNNNGTC 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 189
BstUI CGCG 2 cut(s) 261, 298
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 3 cut(s) 14, 166, 500
BtgI CCRYGG 1 cut(s) 259
BtgZI GCGATG 1 cut(s) 495
BtrI CACGTC 1 cut(s) 172
BtsCI GGATG 4 cut(s) 52, 367, 372, 423
Cac8I GCNNGC 2 cut(s) 337, 439
CfoI GCGC 1 cut(s) 300
Cfr13I GGNCC 1 cut(s) 263
Cfr42I CCGCGG 1 cut(s) 262
CviAII CATG 4 cut(s) 126, 147, 391, 442
CviJI RGCY 3 cut(s) 58, 255, 504
CviKI_1 RGCY 3 cut(s) 58, 255, 504
Eam1104I CTCTTC 2 cut(s) 48, 184
EarI CTCTTC 2 cut(s) 48, 184
Eco130I CCWWGG 1 cut(s) 83
Eco31I GGTCTC 1 cut(s) 233
Eco32I GATATC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 263
EcoRV GATATC 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaeI CATG 4 cut(s) 129, 150, 394, 445
FaiI YATR 7 cut(s) 127, 148, 290, 312, 341, 392, 443
FaqI GGGAC 1 cut(s) 249
FatI CATG 4 cut(s) 125, 146, 390, 441
FauI CCCGC 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 4 cut(s) 59, 374, 379, 430
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 1 cut(s) 438
GlaI GCGC 1 cut(s) 299
GluI GCNGC 1 cut(s) 66
HapII CCGG 3 cut(s) 191, 221, 236
HhaI GCGC 1 cut(s) 300
Hin1II CATG 4 cut(s) 129, 150, 394, 445
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HinfI GANTC 1 cut(s) 224
HpaII CCGG 3 cut(s) 191, 221, 236
HphI GGTGA 3 cut(s) 359, 461, 476
Hpy188I TCNGA 2 cut(s) 78, 118
Hpy188III TCNNGA 4 cut(s) 131, 152, 221, 427
Hpy99I CGWCG 1 cut(s) 273
HpyAV CCTTC 3 cut(s) 84, 119, 344
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 3 cut(s) 65, 202, 458
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 4 cut(s) 129, 150, 394, 445
HspAI GCGC 1 cut(s) 298
Kpn2I TCCGGA 1 cut(s) 220
KspI CCGCGG 1 cut(s) 262
LguI GCTCTTC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 305
LpnPI CCDG 5 cut(s) 204, 222, 234, 249, 321
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 2 cut(s) 37, 52
MaeI CTAG 1 cut(s) 438
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 464
MboII GAAGA 7 cut(s) 19, 65, 108, 166, 171, 206, 505
MluCI AATT 3 cut(s) 134, 155, 197
MmeI TCCRAC 2 cut(s) 24, 101
MroI TCCGGA 1 cut(s) 220
MseI TTAA 1 cut(s) 506
MspA1I CMGCKG 1 cut(s) 261
MspI CCGG 3 cut(s) 191, 221, 236
MspR9I CCNGG 1 cut(s) 191
MvnI CGCG 2 cut(s) 261, 298
NciI CCSGG 1 cut(s) 191
NheI GCTAGC 1 cut(s) 437
NlaIII CATG 4 cut(s) 129, 150, 394, 445
NlaIV GGNNCC 1 cut(s) 265
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 464
NspV TTCGAA 1 cut(s) 377
PciSI GCTCTTC 1 cut(s) 48
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 1 cut(s) 67
PshAI GACNNNNGTC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 263
SacII CCGCGG 1 cut(s) 262
SapI GCTCTTC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 506
SatI GCNGC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 191
SfaNI GCATC 2 cut(s) 37, 52
Sfr303I CCGCGG 1 cut(s) 262
SfuI TTCGAA 1 cut(s) 377
SgrBI CCGCGG 1 cut(s) 262
SinI GGWCC 1 cut(s) 263
Sse9I AATT 3 cut(s) 134, 155, 197
SsiI CCGC 3 cut(s) 233, 259, 261
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 83
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 377, 428
TasI AATT 3 cut(s) 134, 155, 197
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 506
Tru9I TTAA 1 cut(s) 506
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 2 cut(s) 134, 155
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.