Rh1AG166300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002163
Physical Location & Seq
Reverse (-)
31678876 .. 31679196
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG166300.1

Sequence Viewer

Length: 321 bp
ATGGATCGATGTAAACACCTTATTAAAGAGCAGCCAAAATCTTCTACTTATTCCAAGGGGTTTGTTGGTAGTGAACGCCCAAAGCCCAAGGTTCGGCCAGAGTACAGAGTCAAGGCCAAACATCAAGTTCAGCTGCATTCTCCTGATATTGCAGAACAACCTATTATTGATGATCATTCTAAGAAGGATGCTGAAATTGCAAAATTTGCTGACAATGTTATTCAAGAGGCTGTGAACCAGGAACTTAACCGTATTGCTGATGTGGTTGTCAATGAAACCATTGTAAACCATGTGGATATACCTGCAGAACCTGTGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.02

Weight (kDa)

6.51

Isoelectric Point (pI)

28.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 310
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 1 cut(s) 224
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 311
AoxI GGCC 2 cut(s) 95, 114
ApeKI GCWGC 2 cut(s) 31, 133
ApoI RAATTY 1 cut(s) 203
BbvI GCAGC 2 cut(s) 43, 120
BciT130I CCWGG 1 cut(s) 239
BclI TGATCA 1 cut(s) 172
BfmI CTRYAG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 310
BisI GCNGC 2 cut(s) 32, 134
BlsI GCNGC 2 cut(s) 33, 135
Bme1390I CCNGG 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 1 cut(s) 178
Bsa29I ATCGAT 1 cut(s) 7
BsaJI CCNNGG 2 cut(s) 54, 87
Bsc4I CCNNNNNNNGG 1 cut(s) 93
BseBI CCWGG 1 cut(s) 239
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 2 cut(s) 54, 87
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 93
BseXI GCAGC 2 cut(s) 43, 120
BshFI GGCC 2 cut(s) 97, 116
BshVI ATCGAT 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 93
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 2 cut(s) 97, 116
Bsp143I GATC 2 cut(s) 4, 172
BspANI GGCC 2 cut(s) 97, 116
BspDI ATCGAT 1 cut(s) 7
BspMAI CTGCAG 1 cut(s) 307
BspMI ACCTGC 1 cut(s) 310
BspPI GGATC 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 54, 87
BssMI GATC 2 cut(s) 4, 172
BssT1I CCWWGG 2 cut(s) 54, 87
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 180
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 2 cut(s) 7, 175
BstMBI GATC 2 cut(s) 4, 172
BstMWI GCNNNNNNNGC 2 cut(s) 197, 206
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 303
BstV1I GCAGC 2 cut(s) 43, 120
Bsu15I ATCGAT 1 cut(s) 7
BsuRI GGCC 2 cut(s) 97, 116
BsuTUI ATCGAT 1 cut(s) 7
BtsCI GGATG 1 cut(s) 193
BveI ACCTGC 1 cut(s) 310
CaiI CAGNNNCTG 1 cut(s) 311
ClaI ATCGAT 1 cut(s) 7
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 290
CviJI RGCY 6 cut(s) 34, 85, 97, 116, 133, 230
CviKI_1 RGCY 6 cut(s) 34, 85, 97, 116, 133, 230
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 1 cut(s) 180
DpnI GATC 2 cut(s) 6, 174
DpnII GATC 2 cut(s) 4, 172
EaeI YGGCCR 1 cut(s) 95
Eco130I CCWWGG 2 cut(s) 54, 87
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 2 cut(s) 54, 87
ErhI CCWWGG 2 cut(s) 54, 87
FaeI CATG 1 cut(s) 293
FaiI YATR 3 cut(s) 291, 299, 319
FatI CATG 1 cut(s) 289
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 32, 134
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 32, 134
GluI GCNGC 2 cut(s) 32, 134
HaeIII GGCC 2 cut(s) 97, 116
Hin1II CATG 1 cut(s) 293
HinfI GANTC 1 cut(s) 108
Hpy166II GTNNAC 4 cut(s) 14, 74, 235, 286
Hpy188III TCNNGA 2 cut(s) 143, 224
Hpy8I GTNNAC 4 cut(s) 14, 74, 235, 286
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 4 cut(s) 136, 152, 200, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 206
HpyF3I CTNAG 1 cut(s) 180
Hsp92II CATG 1 cut(s) 293
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 2 cut(s) 4, 172
LpnPI CCDG 5 cut(s) 111, 156, 224, 251, 315
Lsp1109I GCAGC 2 cut(s) 43, 120
LweI GCATC 1 cut(s) 178
MalI GATC 2 cut(s) 6, 174
MboI GATC 2 cut(s) 4, 172
MboII GAAGA 1 cut(s) 33
MluCI AATT 2 cut(s) 195, 203
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 1 cut(s) 220
MseI TTAA 2 cut(s) 24, 246
MspA1I CMGCKG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 239
Mva1269I GAATGC 1 cut(s) 136
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 2 cut(s) 197, 206
NdeII GATC 2 cut(s) 4, 172
NlaIII CATG 1 cut(s) 293
PctI GAATGC 1 cut(s) 136
PkrI GCNGC 2 cut(s) 33, 135
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PstI CTGCAG 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 133
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 2 cut(s) 24, 246
SatI GCNGC 2 cut(s) 32, 134
Sau3AI GATC 2 cut(s) 4, 172
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 239
SetI ASST 6 cut(s) 21, 93, 135, 163, 304, 313
SfaNI GCATC 1 cut(s) 178
SfcI CTRYAG 1 cut(s) 303
Sse9I AATT 2 cut(s) 195, 203
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 2 cut(s) 54, 87
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 1 cut(s) 7
TasI AATT 2 cut(s) 195, 203
TatI WGTACW 1 cut(s) 102
Tru1I TTAA 2 cut(s) 24, 246
Tru9I TTAA 2 cut(s) 24, 246
TseI GCWGC 2 cut(s) 31, 133
TspDTI ATGAA 1 cut(s) 288
XapI RAATTY 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.