RLG00000013442

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002163
Physical Location & Seq
Reverse (-)
31583476 .. 31584219
744 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013442

Sequence Viewer

Length: 639 bp
ATGGATCGATGTAAACACCTTATTAAAGAGCAGGCTAATGCTTCTACTTATTCCAAGGGGGTTGTTGGTAGTGAACGCCCAAAACCCAAGGTTCGGCAAGAGTACAGAGTCAAGGCCAAACATCAAGTTCAACTGCGTTCTCCTGATGTTGCAGAACAACCTTTTATTGATGATCATTCTAAGAAGGATGCCGAAATTGCAAAGTTTGCTGACAATGTTATTCAAGAAGCTGTGAACCAGGAACTTAACCGTATTACTGATGTGGTTGTCAATGAAACCATTGTCAACCATGTGGATATACCTGCAGAAACTGTCAATACCATTATCAATCAATCAACTTCATTGGTGCGAAGGCCTTGGCACCGTCTGGTTGAGGAAGAACAAGAGGGTGATTTGAGTGATTCAAGTGCTACTCAGATACAGGGGCCTCTTATTCGTTCGTCAAATCATGTTAATGCTGTTTTAGAGCAAGGGAATGTTAGTGAAGCTTCCTTTAATCTAGCTCTTGAAGCCCAAGAGGTGGCAACTTCAAAAGTGTTAACGAAGTCCCAAAGAAAACGTCTAAGGAAGAAAGTTCGTGAGGCTTTGAATGACTCATCAACCCCTCAGAGGGATGCCTTTTTATCATCATCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.8

Weight (kDa)

7.03

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 310
AccB1I GGYRCC 1 cut(s) 360
AccB7I CCANNNNNTGG 1 cut(s) 520
AclWI GGATC 1 cut(s) 12
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 4 cut(s) 93, 520, 609, 610
AgsI TTSAA 6 cut(s) 131, 224, 405, 509, 531, 589
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 3 cut(s) 230, 488, 503
AluI AGCT 3 cut(s) 230, 488, 503
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 311
AoxI GGCC 3 cut(s) 114, 353, 425
ArsI GACNNNNNNTTYG 2 cut(s) 544, 576
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 1 cut(s) 401
BanI GGYRCC 1 cut(s) 360
BciT130I CCWGG 1 cut(s) 239
BclI TGATCA 1 cut(s) 172
BfaI CTAG 1 cut(s) 500
BfmI CTRYAG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 310
Bme1390I CCNGG 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 2 cut(s) 362, 426
BmrFI CCNGG 1 cut(s) 239
BmsI GCATC 2 cut(s) 178, 604
Bsa29I ATCGAT 1 cut(s) 7
BsaJI CCNNGG 3 cut(s) 54, 87, 356
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 520, 609, 610
BseBI CCWGG 1 cut(s) 239
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 3 cut(s) 54, 87, 356
BseGI GGATG 2 cut(s) 193, 619
BseLI CCNNNNNNNGG 4 cut(s) 93, 520, 609, 610
BseMII CTCAG 2 cut(s) 428, 620
BshFI GGCC 3 cut(s) 116, 355, 427
BshNI GGYRCC 1 cut(s) 360
BshVI ATCGAT 1 cut(s) 7
BslFI GGGAC 1 cut(s) 532
BslI CCNNNNNNNGG 4 cut(s) 93, 520, 609, 610
BsmFI GGGAC 1 cut(s) 532
BsnI GGCC 3 cut(s) 116, 355, 427
Bsp143I GATC 2 cut(s) 4, 172
BspANI GGCC 3 cut(s) 116, 355, 427
BspCNI CTCAG 2 cut(s) 427, 619
BspDI ATCGAT 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 362, 426
BspMAI CTGCAG 1 cut(s) 307
BspMI ACCTGC 1 cut(s) 310
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 360
BssECI CCNNGG 3 cut(s) 54, 87, 356
BssMI GATC 2 cut(s) 4, 172
BssT1I CCWWGG 3 cut(s) 54, 87, 356
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 3 cut(s) 251, 313, 365
BstAPI GCANNNNNTGC 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 4 cut(s) 180, 414, 563, 606
BstF5I GGATG 2 cut(s) 193, 619
BstKTI GATC 2 cut(s) 7, 175
BstMBI GATC 2 cut(s) 4, 172
BstMWI GCNNNNNNNGC 3 cut(s) 197, 206, 509
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 1 cut(s) 303
Bsu15I ATCGAT 1 cut(s) 7
BsuRI GGCC 3 cut(s) 116, 355, 427
BsuTUI ATCGAT 1 cut(s) 7
BtsCI GGATG 2 cut(s) 193, 619
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 33
CaiI CAGNNNCTG 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 425
ClaI ATCGAT 1 cut(s) 7
Csp6I GTAC 1 cut(s) 103
CviAII CATG 2 cut(s) 290, 449
CviJI RGCY 9 cut(s) 35, 116, 230, 355, 427, 488, 503, 512, 584
CviKI_1 RGCY 9 cut(s) 35, 116, 230, 355, 427, 488, 503, 512, 584
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 4 cut(s) 180, 414, 563, 606
DpnI GATC 2 cut(s) 6, 174
DpnII GATC 2 cut(s) 4, 172
Eco130I CCWWGG 3 cut(s) 54, 87, 356
Eco147I AGGCCT 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 3 cut(s) 54, 87, 356
ErhI CCWWGG 3 cut(s) 54, 87, 356
FaeI CATG 2 cut(s) 293, 452
FaiI YATR 3 cut(s) 291, 299, 450
FaqI GGGAC 1 cut(s) 532
FatI CATG 2 cut(s) 289, 448
FbaI TGATCA 1 cut(s) 172
FokI GGATG 2 cut(s) 200, 626
FspBI CTAG 1 cut(s) 500
HaeIII GGCC 3 cut(s) 116, 355, 427
Hin1II CATG 2 cut(s) 293, 452
HincII GTYRAC 2 cut(s) 286, 540
HindII GTYRAC 2 cut(s) 286, 540
HindIII AAGCTT 1 cut(s) 486
HinfI GANTC 3 cut(s) 108, 401, 593
HpaI GTTAAC 1 cut(s) 540
HphI GGTGA 1 cut(s) 401
Hpy166II GTNNAC 5 cut(s) 14, 74, 235, 286, 540
Hpy188I TCNGA 2 cut(s) 417, 609
Hpy188III TCNNGA 4 cut(s) 143, 224, 506, 578
Hpy8I GTNNAC 5 cut(s) 14, 74, 235, 286, 540
HpyAV CCTTC 2 cut(s) 178, 345
HpyCH4III ACNGT 3 cut(s) 251, 313, 365
HpyCH4IV ACGT 1 cut(s) 559
HpyCH4V TGCA 3 cut(s) 152, 200, 305
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 206, 509
HpyF3I CTNAG 4 cut(s) 180, 414, 563, 606
HpySE526I ACGT 1 cut(s) 559
Hsp92II CATG 2 cut(s) 293, 452
Ksp22I TGATCA 1 cut(s) 172
KspAI GTTAAC 1 cut(s) 540
Kzo9I GATC 2 cut(s) 4, 172
LpnPI CCDG 7 cut(s) 17, 156, 224, 251, 315, 353, 407
LweI GCATC 2 cut(s) 178, 604
MaeI CTAG 1 cut(s) 500
MaeII ACGT 1 cut(s) 559
MalI GATC 2 cut(s) 6, 174
MboI GATC 2 cut(s) 4, 172
MboII GAAGA 2 cut(s) 389, 580
MluCI AATT 1 cut(s) 195
MlyI GAGTC 2 cut(s) 117, 587
MnlI CCTC 7 cut(s) 367, 379, 438, 511, 574, 603, 615
MseI TTAA 5 cut(s) 24, 246, 453, 495, 539
MslI CAYNNNNRTG 2 cut(s) 453, 634
MspR9I CCNGG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 3 cut(s) 197, 206, 509
NdeII GATC 2 cut(s) 4, 172
NlaIII CATG 2 cut(s) 293, 452
NlaIV GGNNCC 2 cut(s) 362, 426
PceI AGGCCT 1 cut(s) 355
PfeI GAWTC 1 cut(s) 401
PflMI CCANNNNNTGG 1 cut(s) 520
PleI GAGTC 2 cut(s) 116, 587
PpsI GAGTC 2 cut(s) 116, 587
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 2 cut(s) 362, 426
PspPI GGNCC 1 cut(s) 425
PstI CTGCAG 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 311
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
RseI CAYNNNNRTG 2 cut(s) 453, 634
SaqAI TTAA 5 cut(s) 24, 246, 453, 495, 539
Sau3AI GATC 2 cut(s) 4, 172
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 2 cut(s) 117, 587
ScrFI CCNGG 1 cut(s) 239
SetI ASST 9 cut(s) 21, 93, 163, 232, 304, 490, 505, 522, 562
SfaNI GCATC 2 cut(s) 178, 604
SfcI CTRYAG 1 cut(s) 303
SmiMI CAYNNNNRTG 2 cut(s) 453, 634
Sse9I AATT 1 cut(s) 195
SseBI AGGCCT 1 cut(s) 355
SspMI CTAG 1 cut(s) 500
StuI AGGCCT 1 cut(s) 355
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 3 cut(s) 54, 87, 356
TaaI ACNGT 3 cut(s) 251, 313, 365
TaiI ACGT 1 cut(s) 562
TaqI TCGA 1 cut(s) 7
TasI AATT 1 cut(s) 195
TatI WGTACW 1 cut(s) 102
TfiI GAWTC 1 cut(s) 401
Tru1I TTAA 5 cut(s) 24, 246, 453, 495, 539
Tru9I TTAA 5 cut(s) 24, 246, 453, 495, 539
TspDTI ATGAA 2 cut(s) 288, 330
Van91I CCANNNNNTGG 1 cut(s) 520
XspI CTAG 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.